; convert-matrix -v 1 -i $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.141420_y6Waxm_pssm_count_matrices.tf -from tf -to tab -return counts -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.141420_y6Waxm_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.141420_y6Waxm_pssm_count_matrices_links.txt
; Input files
; input /var/www/html/rsat/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.141420_y6Waxm_pssm_count_matrices.tf
; Input format tf
; Output files
; output /var/www/html/rsat/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.141420_y6Waxm_pssm_count_matrices_links.txt
; Output format tab
; pseudo-weight 1
a 0 3 11 1 0 0 0 0 0 2 1 3
c 4 3 0 0 13 12 0 12 0 9 5 3
g 3 1 0 12 0 1 13 0 0 0 2 1
t 6 6 2 0 0 0 0 1 13 2 5 6
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.141420_y6Waxm_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.141420_y6Waxm_pssm_count_matrices_logo_m1_rc.png
;
a 3 4 11 10 9 0 1 0 15 15 1 14 0 1 3
c 1 3 0 2 0 0 0 15 0 0 13 1 14 7 1
g 4 1 1 1 0 15 0 0 0 0 0 0 0 1 0
t 7 7 3 2 6 0 14 0 0 0 1 0 1 6 11
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.141420_y6Waxm_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.141420_y6Waxm_pssm_count_matrices_logo_m2_rc.png
;
a 4 2 1 0 0 0 0 0 11 2 0
c 3 3 2 0 11 0 0 0 0 3 0
g 3 3 3 11 0 0 11 11 0 2 7
t 1 3 5 0 0 11 0 0 0 4 4
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.141420_y6Waxm_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.141420_y6Waxm_pssm_count_matrices_logo_m3_rc.png
;
a 1 2 0 4 5 0 5 0 0 5 1 0 2 1 2 3
c 0 0 1 0 0 0 0 5 0 0 1 0 3 1 1 1
g 2 1 3 1 0 0 0 0 5 0 0 1 0 2 2 0
t 2 2 1 0 0 5 0 0 0 0 3 4 0 1 0 1
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.141420_y6Waxm_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.141420_y6Waxm_pssm_count_matrices_logo_m4_rc.png
;
a 1 6 12 0 0 0 2 1 16 1 7 5
c 5 6 0 0 0 0 0 15 0 0 0 2
g 5 2 0 0 1 16 0 0 0 14 3 2
t 5 2 4 16 15 0 14 0 0 1 6 7
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.141420_y6Waxm_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.141420_y6Waxm_pssm_count_matrices_logo_m5_rc.png
;
a 3 2 1 3 7 0 0 0 0 0 1 1 0 4
c 3 2 8 8 4 0 15 15 0 14 2 9 5 3
g 7 5 2 1 0 15 0 0 15 0 0 2 3 2
t 2 6 4 3 4 0 0 0 0 1 12 3 7 6
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.141420_y6Waxm_pssm_count_matrices_logo_m6.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.141420_y6Waxm_pssm_count_matrices_logo_m6_rc.png
;
a 4 8 11 12 0 0 11 0 0 1 6 3 4
c 2 0 0 0 12 0 0 0 0 11 3 1 3
g 3 1 0 1 0 12 2 0 0 1 2 3 2
t 4 4 2 0 1 1 0 13 13 0 2 6 4
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.141420_y6Waxm_pssm_count_matrices_logo_m7.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.141420_y6Waxm_pssm_count_matrices_logo_m7_rc.png
;
a 8 6 2 17 0 0 1 0 0 9 8 5 7 4
c 5 4 2 0 0 19 1 0 17 0 2 7 7 7
g 3 6 12 1 19 0 17 19 0 1 4 5 3 3
t 3 3 3 1 0 0 0 0 2 9 5 2 2 5
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.141420_y6Waxm_pssm_count_matrices_logo_m8.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.141420_y6Waxm_pssm_count_matrices_logo_m8_rc.png
;
a 6 3 17 0 0 0 0 17 6 5
c 3 2 0 0 0 0 0 0 4 2
g 4 8 0 17 17 17 0 0 5 6
t 4 4 0 0 0 0 17 0 2 4
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.141420_y6Waxm_pssm_count_matrices_logo_m9.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.141420_y6Waxm_pssm_count_matrices_logo_m9_rc.png
;
a 7 2 1 1 0 1 0 0 17 17 4 5
c 0 7 14 1 0 0 0 1 0 0 6 5
g 6 4 1 14 0 0 1 1 0 0 2 2
t 4 4 1 1 17 16 16 15 0 0 5 5
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.141420_y6Waxm_pssm_count_matrices_logo_m10.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.141420_y6Waxm_pssm_count_matrices_logo_m10_rc.png
;
a 5 7 14 0 0 0 14 0 4 3
c 5 0 0 0 0 0 0 0 5 2
g 0 2 0 14 14 14 0 14 4 6
t 4 5 0 0 0 0 0 0 1 3
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.141420_y6Waxm_pssm_count_matrices_logo_m11.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.141420_y6Waxm_pssm_count_matrices_logo_m11_rc.png
;
; Host name rsat
; Job started 2026-06-17.141428
; Job done 2026-06-17.141431
; Seconds 0.18
; user 0.18
; system 0.08
; cuser 2.62
; csystem 0.46