; pattern-assembly  -v 1 -subst 1 -toppat 50 -2str -max_asmb_nb 20 -i $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.142027_KBUGvS.tab -o $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.142027_KBUGvS.asmb
; Input file	/var/www/html/rsat/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.142027_KBUGvS.tab
; Output file	/var/www/html/rsat/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.142027_KBUGvS.asmb
; Input score column           	8
; Output score column          	0
; Strand-insensitive assembly
; Max flanking bases           	1
; Max substitutions            	1
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	0
; Top number of patterns       	50
; Number of input patterns     	16
;

; assembly # 1	seed: cagatg	1 assembled patterns	length 6
;alignt	rev_cpl	score
cagatg	catctg	2.12
cagatg	catctg	2.12	best consensus

; assembly # 2	seed: gattcacc	4 assembled patterns	length 9
;  alignt	  rev_cpl	score
gattcacc.	.ggtgaatc	1.70
.attcacca	tggtgaat.	1.21
.attcacc.	.ggtgaat.	0.79
..ttcacc.	.ggtgaa..	1.24
gattcacca	tggtgaatc	1.70	best consensus

; assembly # 3	seed: aacgcc	1 assembled patterns	length 6
;alignt	rev_cpl	score
aacgcc	ggcgtt	1.01
aacgcc	ggcgtt	1.01	best consensus

; assembly # 4	seed: tacataa	1 assembled patterns	length 7
;alignt	rev_cpl	score
tacataa	ttatgta	0.96
tacataa	ttatgta	0.96	best consensus

; assembly # 5	seed: taaatgaa	1 assembled patterns	length 8
; alignt	 rev_cpl	score
taaatgaa	ttcattta	0.92
taaatgaa	ttcattta	0.92	best consensus

; assembly # 6	seed: tcaaca	3 assembled patterns	length 8
; alignt	 rev_cpl	score
cttcaa..	..ttgaag	0.25
.ttcaaca	tgttgaa.	0.04
..tcaaca	tgttga..	0.84
cttcaaca	tgttgaag	0.84	best consensus

; assembly # 7	seed: aggggag	2 assembled patterns	length 7
;alignt	rev_cpl	score
aggggag	ctcccct	0.78
.ggggag	ctcccc.	0.51
aggggag	ctcccct	0.78	best consensus

; assembly # 8	seed: taaaga	1 assembled patterns	length 6
;alignt	rev_cpl	score
taaaga	tcttta	0.24
taaaga	tcttta	0.24	best consensus

; assembly # 9	seed: cgatta	1 assembled patterns	length 6
;alignt	rev_cpl	score
cgatta	taatcg	0.14
cgatta	taatcg	0.14	best consensus

; assembly # 10	seed: cccttc	1 assembled patterns	length 6
;alignt	rev_cpl	score
cccttc	gaaggg	0.09
cccttc	gaaggg	0.09	best consensus
; Host name	rsat
; Job started	2026-06-17.142032
; Job done	2026-06-17.142032
; Seconds	0.64
;	user	0.64
;	system	0
;	cuser	0
;	csystem	0