; Job started 2026_06_17.142651 ; Job done 2026_06_17.142651 ; Job started 2026_06_17.142651 ; Job done 2026_06_17.142651 ; Job started 2026_06_17.142652 ; Job done 2026_06_17.142652 ; Job started 2026_06_17.142653 ; Job done 2026_06_17.142653 ; oligo-analysis -v 1 -sort -i $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.142650_ILJBgP.fasta.purged -format fasta -lth occ_sig 0 -uth rank 50 -return occ,proba,rank -2str -noov -quick_if_possible -seqtype dna -markov 2 -pseudo 0.01 -l 5 -o $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.142650_guxhiV_5nt.tab ; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42. ; Program version 1.169 ; Quick counting mode ; Detection of over-represented words (right-tail test) ; Oligomer length 5 ; Input file $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.142650_ILJBgP.fasta.purged ; Input format fasta ; Output file $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.142650_guxhiV_5nt.tab ; Discard overlapping matches ; Counted on both strands ; grouped by pairs of reverse complements ; Background model Markov ; Background estimation method Markov model estimated from input sequences ; Markov chain order 2 ; Pseudo-frequency 0.01 ; Pseudo-frequency per oligo 1.953125e-05 ; Sequence type DNA ; Nb of sequences 1 ; Sum of sequence lengths 10667 ; discarded residues NA (quick mode) (other letters than ACGT) ; discarded occurrences NA (quick mode) (contain discarded residues) ; nb possible positions NA (quick mode) ; total oligo occurrences 10511 ; total overlapping occurrences 212 ; total non overlapping occ 10299 ; alphabet size 4 ; nb possible oligomers 512 ; oligomers tested for significance 500 ; Sequences: ; 5-UTseq838-UTL300-PhiB002 10667 ; ; column headers ; 1 seq oligomer sequence ; 2 id oligomer identifier ; 3 exp_freq expected relative frequency ; 4 occ observed occurrences ; 5 exp_occ expected occurrences ; 6 occ_P occurrence probability (binomial) ; 7 occ_E E-value for occurrences (binomial) ; 8 occ_sig occurrence significance (binomial) ; 9 rank rank ; 10 ovl_occ number of overlapping occurrences (discarded from the count) ; 11 forbocc forbidden positions (to avoid self-overlap) #seq id exp_freq occ exp_occ occ_P occ_E occ_sig rank ovl_occ forbocc gccgc gccgc|gcggc 0.0004280869600 20 4.50 6.6e-08 3.3e-05 4.48 1 0 80 agcgg agcgg|ccgct 0.0011192425900 32 11.76 8.1e-07 4.0e-04 3.39 2 0 128 gtcaa gtcaa|ttgac 0.0016582223500 34 17.43 0.00028 1.4e-01 0.85 3 0 136 acgat acgat|atcgt 0.0012546429100 27 13.19 0.00055 2.8e-01 0.56 4 0 108 gagga gagga|tcctc 0.0031930441000 54 33.56 0.00069 3.5e-01 0.46 5 6 216 gacta gacta|tagtc 0.0015364137400 30 16.15 0.00129 6.4e-01 0.19 6 0 120 gcagc gcagc|gctgc 0.0010929422500 23 11.49 0.00179 8.9e-01 0.05 7 0 92 ; Host name rsat ; Job started 2026-06-17.142651 ; Job done 2026-06-17.142651 ; Seconds 0.19 ; user 0.19 ; system 0 ; cuser 0.09 ; csystem 0.02 ; oligo-analysis -v 1 -sort -i $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.142650_ILJBgP.fasta.purged -format fasta -lth occ_sig 0 -uth rank 50 -return occ,proba,rank -2str -noov -quick_if_possible -seqtype dna -markov 2 -pseudo 0.01 -l 6 -o $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.142650_guxhiV_6nt.tab ; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42. ; Program version 1.169 ; Quick counting mode ; Detection of over-represented words (right-tail test) ; Oligomer length 6 ; Input file $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.142650_ILJBgP.fasta.purged ; Input format fasta ; Output file $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.142650_guxhiV_6nt.tab ; Discard overlapping matches ; Counted on both strands ; grouped by pairs of reverse complements ; Background model Markov ; Background estimation method Markov model estimated from input sequences ; Markov chain order 2 ; Pseudo-frequency 0.01 ; Pseudo-frequency per oligo 4.80769230769231e-06 ; Sequence type DNA ; Nb of sequences 1 ; Sum of sequence lengths 10667 ; discarded residues NA (quick mode) (other letters than ACGT) ; discarded occurrences NA (quick mode) (contain discarded residues) ; nb possible positions NA (quick mode) ; total oligo occurrences 10508 ; total overlapping occurrences 72 ; total non overlapping occ 10436 ; alphabet size 4 ; nb possible oligomers 2080 ; oligomers tested for significance 1912 ; Sequences: ; 5-UTseq838-UTL300-PhiB002 10667 ; ; column headers ; 1 seq oligomer sequence ; 2 id oligomer identifier ; 3 exp_freq expected relative frequency ; 4 occ observed occurrences ; 5 exp_occ expected occurrences ; 6 occ_P occurrence probability (binomial) ; 7 occ_E E-value for occurrences (binomial) ; 8 occ_sig occurrence significance (binomial) ; 9 rank rank ; 10 ovl_occ number of overlapping occurrences (discarded from the count) ; 11 forbocc forbidden positions (to avoid self-overlap) #seq id exp_freq occ exp_occ occ_P occ_E occ_sig rank ovl_occ forbocc agcggc agcggc|gccgct 0.0001540532166 13 1.62 1.9e-08 3.6e-05 4.45 1 0 65 gtcaac gtcaac|gttgac 0.0003212238246 16 3.38 5.7e-07 1.1e-03 2.96 2 0 80 agtcaa agtcaa|ttgact 0.0004528581846 17 4.76 1.1e-05 2.0e-02 1.69 3 0 85 ccgctc ccgctc|gagcgg 0.0002761410066 13 2.90 1.1e-05 2.2e-02 1.66 4 0 65 agccgc agccgc|gcggct 0.0001640233086 10 1.72 1.3e-05 2.6e-02 1.59 5 0 50 atagtc atagtc|gactat 0.0004573428846 16 4.81 4.4e-05 8.3e-02 1.08 6 0 80 agggta agggta|taccct 0.0007455714846 20 7.83 0.00019 3.7e-01 0.43 7 1 100 ; Host name rsat ; Job started 2026-06-17.142651 ; Job done 2026-06-17.142652 ; Seconds 0.37 ; user 0.37 ; system 0.02 ; cuser 0.11 ; csystem 0 ; oligo-analysis -v 1 -sort -i $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.142650_ILJBgP.fasta.purged -format fasta -lth occ_sig 0 -uth rank 50 -return occ,proba,rank -2str -noov -quick_if_possible -seqtype dna -markov 2 -pseudo 0.01 -l 7 -o $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.142650_guxhiV_7nt.tab ; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42. ; Program version 1.169 ; Quick counting mode ; Detection of over-represented words (right-tail test) ; Oligomer length 7 ; Input file $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.142650_ILJBgP.fasta.purged ; Input format fasta ; Output file $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.142650_guxhiV_7nt.tab ; Discard overlapping matches ; Counted on both strands ; grouped by pairs of reverse complements ; Background model Markov ; Background estimation method Markov model estimated from input sequences ; Markov chain order 2 ; Pseudo-frequency 0.01 ; Pseudo-frequency per oligo 1.220703125e-06 ; Sequence type DNA ; Nb of sequences 1 ; Sum of sequence lengths 10667 ; discarded residues NA (quick mode) (other letters than ACGT) ; discarded occurrences NA (quick mode) (contain discarded residues) ; nb possible positions NA (quick mode) ; total oligo occurrences 10503 ; total overlapping occurrences 55 ; total non overlapping occ 10448 ; alphabet size 4 ; nb possible oligomers 8192 ; oligomers tested for significance 5086 ; Sequences: ; 5-UTseq838-UTL300-PhiB002 10667 ; ; column headers ; 1 seq oligomer sequence ; 2 id oligomer identifier ; 3 exp_freq expected relative frequency ; 4 occ observed occurrences ; 5 exp_occ expected occurrences ; 6 occ_P occurrence probability (binomial) ; 7 occ_E E-value for occurrences (binomial) ; 8 occ_sig occurrence significance (binomial) ; 9 rank rank ; 10 ovl_occ number of overlapping occurrences (discarded from the count) ; 11 forbocc forbidden positions (to avoid self-overlap) #seq id exp_freq occ exp_occ occ_P occ_E occ_sig rank ovl_occ forbocc gtcaaca gtcaaca|tgttgac 0.0001036392063 10 1.09 2.4e-07 1.2e-03 2.91 1 0 60 agccgct agccgct|agcggct 0.0000593783853 8 0.62 3.3e-07 1.7e-03 2.78 2 0 48 gagcggc gagcggc|gccgctc 0.0000381705062 6 0.40 4.1e-06 2.1e-02 1.68 3 0 36 aagtcaa aagtcaa|ttgactt 0.0001441096142 10 1.51 4.4e-06 2.2e-02 1.65 4 0 60 agtcaac agtcaac|gttgact 0.0000872466873 8 0.92 5.5e-06 2.8e-02 1.56 5 0 48 cccgccg cccgccg|cggcggg 0.0000206658014 4 0.22 7.8e-05 4.0e-01 0.40 6 0 24 agtgtaa agtgtaa|ttacact 0.0001678820882 9 1.76 9.4e-05 4.8e-01 0.32 7 0 54 aagaaat aagaaat|atttctt 0.0002993285463 12 3.14 0.00011 5.6e-01 0.25 8 0 72 gtgttga gtgttga|tcaacac 0.0001082867612 7 1.14 0.00018 9.2e-01 0.03 9 0 42 ; Host name rsat ; Job started 2026-06-17.142652 ; Job done 2026-06-17.142652 ; Seconds 0.74 ; user 0.74 ; system 0.03 ; cuser 0.09 ; csystem 0.01 ; oligo-analysis -v 1 -sort -i $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.142650_ILJBgP.fasta.purged -format fasta -lth occ_sig 0 -uth rank 50 -return occ,proba,rank -2str -noov -quick_if_possible -seqtype dna -markov 2 -pseudo 0.01 -l 8 -o $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.142650_guxhiV_8nt.tab ; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42. ; Program version 1.169 ; Quick counting mode ; Detection of over-represented words (right-tail test) ; Oligomer length 8 ; Input file $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.142650_ILJBgP.fasta.purged ; Input format fasta ; Output file $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.142650_guxhiV_8nt.tab ; Discard overlapping matches ; Counted on both strands ; grouped by pairs of reverse complements ; Background model Markov ; Background estimation method Markov model estimated from input sequences ; Markov chain order 2 ; Pseudo-frequency 0.01 ; Pseudo-frequency per oligo 3.03988326848249e-07 ; Sequence type DNA ; Nb of sequences 1 ; Sum of sequence lengths 10667 ; discarded residues NA (quick mode) (other letters than ACGT) ; discarded occurrences NA (quick mode) (contain discarded residues) ; nb possible positions NA (quick mode) ; total oligo occurrences 10499 ; total overlapping occurrences 17 ; total non overlapping occ 10482 ; alphabet size 4 ; nb possible oligomers 32896 ; oligomers tested for significance 8126 ; Sequences: ; 5-UTseq838-UTL300-PhiB002 10667 ; ; column headers ; 1 seq oligomer sequence ; 2 id oligomer identifier ; 3 exp_freq expected relative frequency ; 4 occ observed occurrences ; 5 exp_occ expected occurrences ; 6 occ_P occurrence probability (binomial) ; 7 occ_E E-value for occurrences (binomial) ; 8 occ_sig occurrence significance (binomial) ; 9 rank rank ; 10 ovl_occ number of overlapping occurrences (discarded from the count) ; 11 forbocc forbidden positions (to avoid self-overlap) #seq id exp_freq occ exp_occ occ_P occ_E occ_sig rank ovl_occ forbocc gtcaacac gtcaacac|gtgttgac 0.0000187470438 6 0.20 6.8e-08 5.5e-04 3.26 1 0 42 aagtcaac aagtcaac|gttgactt 0.0000276896247 6 0.29 6.5e-07 5.3e-03 2.28 2 0 42 agtcaaca agtcaaca|tgttgact 0.0000279687057 6 0.29 6.9e-07 5.6e-03 2.25 3 0 42 cccgccgc cccgccgc|gcggcggg 0.0000041587413 3 0.04 1.3e-05 1.1e-01 0.96 4 0 21 attgtcag attgtcag|ctgacaat 0.0000286652202 5 0.30 1.6e-05 1.3e-01 0.89 5 0 35 agccgctc agccgctc|gagcggct 0.0000147501663 4 0.15 2.1e-05 1.7e-01 0.76 6 0 28 agtatatc agtatatc|gatatact 0.0000576911787 6 0.61 4.1e-05 3.3e-01 0.48 7 0 42 ; Host name rsat ; Job started 2026-06-17.142653 ; Job done 2026-06-17.142654 ; Seconds 1.5 ; user 1.5 ; system 0.04 ; cuser 0.12 ; csystem 0.02