; pattern-assembly  -v 1 -subst 1 -toppat 50 -2str -max_asmb_nb 20 -i $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.142701_4DoJCc.tab -o $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.142701_4DoJCc.asmb
; Input file	/var/www/html/rsat/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.142701_4DoJCc.tab
; Output file	/var/www/html/rsat/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.142701_4DoJCc.asmb
; Input score column           	8
; Output score column          	0
; Strand-insensitive assembly
; Max flanking bases           	1
; Max substitutions            	1
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	0
; Top number of patterns       	50
; Number of input patterns     	23
;

; assembly # 1	seed: cagatg	2 assembled patterns	length 6
;alignt	rev_cpl	score
cagatg	catctg	2.12
.agatg	catct.	1.97
cagatg	catctg	2.12	best consensus

; assembly # 2	seed: gattcacc	4 assembled patterns	length 9
;  alignt	  rev_cpl	score
gattcacc.	.ggtgaatc	1.70
.attcacca	tggtgaat.	1.21
.attcacc.	.ggtgaat.	0.79
..ttcacc.	.ggtgaa..	1.24
gattcacca	tggtgaatc	1.70	best consensus

; assembly # 3	seed: cttca	5 assembled patterns	length 8
; alignt	 rev_cpl	score
cttca...	...tgaag	1.58
cttcaa..	..ttgaag	0.25
.ttcaaca	tgttgaa.	0.04
..tcaaca	tgttga..	0.84
..tcaac.	.gttga..	0.27
cttcaaca	tgttgaag	1.58	best consensus

; assembly # 4	seed: ggaga	4 assembled patterns	length 8
; alignt	 rev_cpl	score
aggggag.	.ctcccct	0.78
.ggggag.	.ctcccc.	0.51
..gggag.	.ctccc..	0.19
...ggaga	tctcc...	1.23
aggggaga	tctcccct	1.23	best consensus

; assembly # 5	seed: aacgcc	1 assembled patterns	length 6
;alignt	rev_cpl	score
aacgcc	ggcgtt	1.01
aacgcc	ggcgtt	1.01	best consensus

; assembly # 6	seed: tacataa	1 assembled patterns	length 7
;alignt	rev_cpl	score
tacataa	ttatgta	0.96
tacataa	ttatgta	0.96	best consensus

; assembly # 7	seed: taaatgaa	2 assembled patterns	length 9
;  alignt	  rev_cpl	score
taaatgaa.	.ttcattta	0.92
....tgaag	cttca....	1.58
taaatgaag	cttcattta	1.58	best consensus

; assembly # 8	seed: cttta	2 assembled patterns	length 6
;alignt	rev_cpl	score
tcttta	taaaga	0.24
.cttta	taaag.	0.90
tcttta	taaaga	0.90	best consensus

; assembly # 9	seed: cgata	1 assembled patterns	length 5
;alignt	rev_cpl	score
cgata	tatcg	0.43
cgata	tatcg	0.43	best consensus

; assembly # 10	seed: cgatta	1 assembled patterns	length 6
;alignt	rev_cpl	score
cgatta	taatcg	0.14
cgatta	taatcg	0.14	best consensus

; assembly # 11	seed: cccttc	6 assembled patterns	length 10
;   alignt	   rev_cpl	score
cccttc....	....gaaggg	0.09
..cttca...	...tgaag..	1.58
..cttcaa..	..ttgaag..	0.25
...ttcaaca	tgttgaa...	0.04
....tcaaca	tgttga....	0.84
....tcaac.	.gttga....	0.27
cccttcaaca	tgttgaaggg	1.58	best consensus
; Host name	rsat
; Job started	2026-06-17.142705
; Job done	2026-06-17.142707
; Seconds	1.26
;	user	1.26
;	system	0.04
;	cuser	0
;	csystem	0