; pattern-assembly  -v 1 -subst 1 -toppat 50 -2str -max_asmb_nb 20 -i $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.143314_QGqNu0.tab -o $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.143314_QGqNu0.asmb
; Input file	/var/www/html/rsat/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.143314_QGqNu0.tab
; Output file	/var/www/html/rsat/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.143314_QGqNu0.asmb
; Input score column           	8
; Output score column          	0
; Strand-insensitive assembly
; Max flanking bases           	1
; Max substitutions            	1
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	0
; Top number of patterns       	50
; Number of input patterns     	6
;

; assembly # 1	seed: agatgg	3 assembled patterns	length 7
;alignt	rev_cpl	score
agatgg.	.ccatct	0.97
.gatgga	tccatc.	0.27
.gatgg.	.ccatc.	0.02
agatgga	tccatct	0.97	best consensus

; assembly # 2	seed: gaagtctc	1 assembled patterns	length 8
; alignt	 rev_cpl	score
gaagtctc	gagacttc	0.54
gaagtctc	gagacttc	0.54	best consensus

; assembly # 3	seed: atatgta	2 assembled patterns	length 7
;alignt	rev_cpl	score
atatgta	tacatat	0.24
.tatgta	tacata.	0.12
atatgta	tacatat	0.24	best consensus
; Host name	rsat
; Job started	2026-06-17.143318
; Job done	2026-06-17.143318
; Seconds	0.16
;	user	0.16
;	system	0
;	cuser	0
;	csystem	0