; Job started 2026_06_17.143315 ; Job done 2026_06_17.143315 ; Job started 2026_06_17.143315 ; Job done 2026_06_17.143315 ; Job started 2026_06_17.143316 ; Job done 2026_06_17.143316 ; Job started 2026_06_17.143317 ; Job done 2026_06_17.143317 ; oligo-analysis -v 1 -sort -i $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.143314_edXDsi.fasta.purged -format fasta -lth occ_sig 0 -uth rank 50 -return occ,proba,rank -2str -noov -quick_if_possible -seqtype dna -markov 2 -pseudo 0.01 -l 5 -o $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.143314_QGqNu0_5nt.tab ; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42. ; Program version 1.169 ; Quick counting mode ; Detection of over-represented words (right-tail test) ; Oligomer length 5 ; Input file $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.143314_edXDsi.fasta.purged ; Input format fasta ; Output file $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.143314_QGqNu0_5nt.tab ; Discard overlapping matches ; Counted on both strands ; grouped by pairs of reverse complements ; Background model Markov ; Background estimation method Markov model estimated from input sequences ; Markov chain order 2 ; Pseudo-frequency 0.01 ; Pseudo-frequency per oligo 1.953125e-05 ; Sequence type DNA ; Nb of sequences 1 ; Sum of sequence lengths 17700 ; discarded residues NA (quick mode) (other letters than ACGT) ; discarded occurrences NA (quick mode) (contain discarded residues) ; nb possible positions NA (quick mode) ; total oligo occurrences 10149 ; total overlapping occurrences 272 ; total non overlapping occ 9877 ; alphabet size 4 ; nb possible oligomers 512 ; oligomers tested for significance 509 ; Sequences: ; 6-UTseq839-UTL300-SPB 17700 ; ; column headers ; 1 seq oligomer sequence ; 2 id oligomer identifier ; 3 exp_freq expected relative frequency ; 4 occ observed occurrences ; 5 exp_occ expected occurrences ; 6 occ_P occurrence probability (binomial) ; 7 occ_E E-value for occurrences (binomial) ; 8 occ_sig occurrence significance (binomial) ; 9 rank rank ; 10 ovl_occ number of overlapping occurrences (discarded from the count) ; 11 forbocc forbidden positions (to avoid self-overlap) #seq id exp_freq occ exp_occ occ_P occ_E occ_sig rank ovl_occ forbocc ccatc ccatc|gatgg 0.0015606707200 29 15.84 0.00188 9.6e-01 0.02 1 1 116 ; Host name rsat ; Job started 2026-06-17.143315 ; Job done 2026-06-17.143315 ; Seconds 0.15 ; user 0.15 ; system 0.01 ; cuser 0.07 ; csystem 0.01 ; oligo-analysis -v 1 -sort -i $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.143314_edXDsi.fasta.purged -format fasta -lth occ_sig 0 -uth rank 50 -return occ,proba,rank -2str -noov -quick_if_possible -seqtype dna -markov 2 -pseudo 0.01 -l 6 -o $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.143314_QGqNu0_6nt.tab ; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42. ; Program version 1.169 ; Quick counting mode ; Detection of over-represented words (right-tail test) ; Oligomer length 6 ; Input file $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.143314_edXDsi.fasta.purged ; Input format fasta ; Output file $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.143314_QGqNu0_6nt.tab ; Discard overlapping matches ; Counted on both strands ; grouped by pairs of reverse complements ; Background model Markov ; Background estimation method Markov model estimated from input sequences ; Markov chain order 2 ; Pseudo-frequency 0.01 ; Pseudo-frequency per oligo 4.80769230769231e-06 ; Sequence type DNA ; Nb of sequences 1 ; Sum of sequence lengths 17700 ; discarded residues NA (quick mode) (other letters than ACGT) ; discarded occurrences NA (quick mode) (contain discarded residues) ; nb possible positions NA (quick mode) ; total oligo occurrences 10144 ; total overlapping occurrences 84 ; total non overlapping occ 10060 ; alphabet size 4 ; nb possible oligomers 2080 ; oligomers tested for significance 1806 ; Sequences: ; 6-UTseq839-UTL300-SPB 17700 ; ; column headers ; 1 seq oligomer sequence ; 2 id oligomer identifier ; 3 exp_freq expected relative frequency ; 4 occ observed occurrences ; 5 exp_occ expected occurrences ; 6 occ_P occurrence probability (binomial) ; 7 occ_E E-value for occurrences (binomial) ; 8 occ_sig occurrence significance (binomial) ; 9 rank rank ; 10 ovl_occ number of overlapping occurrences (discarded from the count) ; 11 forbocc forbidden positions (to avoid self-overlap) #seq id exp_freq occ exp_occ occ_P occ_E occ_sig rank ovl_occ forbocc agatgg agatgg|ccatct 0.0005397365256 17 5.48 6e-05 1.1e-01 0.97 1 0 85 gatgga gatgga|tccatc 0.0006200731446 17 6.29 0.00030 5.4e-01 0.27 2 0 85 tacata tacata|tatgta 0.0006996800346 18 7.10 0.00042 7.6e-01 0.12 3 0 90 ; Host name rsat ; Job started 2026-06-17.143315 ; Job done 2026-06-17.143315 ; Seconds 0.26 ; user 0.26 ; system 0.03 ; cuser 0.11 ; csystem 0.01 ; oligo-analysis -v 1 -sort -i $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.143314_edXDsi.fasta.purged -format fasta -lth occ_sig 0 -uth rank 50 -return occ,proba,rank -2str -noov -quick_if_possible -seqtype dna -markov 2 -pseudo 0.01 -l 7 -o $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.143314_QGqNu0_7nt.tab ; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42. ; Program version 1.169 ; Quick counting mode ; Detection of over-represented words (right-tail test) ; Oligomer length 7 ; Input file $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.143314_edXDsi.fasta.purged ; Input format fasta ; Output file $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.143314_QGqNu0_7nt.tab ; Discard overlapping matches ; Counted on both strands ; grouped by pairs of reverse complements ; Background model Markov ; Background estimation method Markov model estimated from input sequences ; Markov chain order 2 ; Pseudo-frequency 0.01 ; Pseudo-frequency per oligo 1.220703125e-06 ; Sequence type DNA ; Nb of sequences 1 ; Sum of sequence lengths 17700 ; discarded residues NA (quick mode) (other letters than ACGT) ; discarded occurrences NA (quick mode) (contain discarded residues) ; nb possible positions NA (quick mode) ; total oligo occurrences 10139 ; total overlapping occurrences 74 ; total non overlapping occ 10065 ; alphabet size 4 ; nb possible oligomers 8192 ; oligomers tested for significance 4416 ; Sequences: ; 6-UTseq839-UTL300-SPB 17700 ; ; column headers ; 1 seq oligomer sequence ; 2 id oligomer identifier ; 3 exp_freq expected relative frequency ; 4 occ observed occurrences ; 5 exp_occ expected occurrences ; 6 occ_P occurrence probability (binomial) ; 7 occ_E E-value for occurrences (binomial) ; 8 occ_sig occurrence significance (binomial) ; 9 rank rank ; 10 ovl_occ number of overlapping occurrences (discarded from the count) ; 11 forbocc forbidden positions (to avoid self-overlap) #seq id exp_freq occ exp_occ occ_P occ_E occ_sig rank ovl_occ forbocc atatgta atatgta|tacatat 0.0002243637663 10 2.27 0.00013 5.8e-01 0.24 1 0 60 ; Host name rsat ; Job started 2026-06-17.143315 ; Job done 2026-06-17.143316 ; Seconds 0.71 ; user 0.71 ; system 0.01 ; cuser 0.11 ; csystem 0.02 ; oligo-analysis -v 1 -sort -i $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.143314_edXDsi.fasta.purged -format fasta -lth occ_sig 0 -uth rank 50 -return occ,proba,rank -2str -noov -quick_if_possible -seqtype dna -markov 2 -pseudo 0.01 -l 8 -o $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.143314_QGqNu0_8nt.tab ; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42. ; Program version 1.169 ; Quick counting mode ; Detection of over-represented words (right-tail test) ; Oligomer length 8 ; Input file $RSAT/public_html/tmp/www-data/2026/06/17/tmp_sequence_2026-06-17.143314_edXDsi.fasta.purged ; Input format fasta ; Output file $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.143314_QGqNu0_8nt.tab ; Discard overlapping matches ; Counted on both strands ; grouped by pairs of reverse complements ; Background model Markov ; Background estimation method Markov model estimated from input sequences ; Markov chain order 2 ; Pseudo-frequency 0.01 ; Pseudo-frequency per oligo 3.03988326848249e-07 ; Sequence type DNA ; Nb of sequences 1 ; Sum of sequence lengths 17700 ; discarded residues NA (quick mode) (other letters than ACGT) ; discarded occurrences NA (quick mode) (contain discarded residues) ; nb possible positions NA (quick mode) ; total oligo occurrences 10134 ; total overlapping occurrences 22 ; total non overlapping occ 10112 ; alphabet size 4 ; nb possible oligomers 32896 ; oligomers tested for significance 7311 ; Sequences: ; 6-UTseq839-UTL300-SPB 17700 ; ; column headers ; 1 seq oligomer sequence ; 2 id oligomer identifier ; 3 exp_freq expected relative frequency ; 4 occ observed occurrences ; 5 exp_occ expected occurrences ; 6 occ_P occurrence probability (binomial) ; 7 occ_E E-value for occurrences (binomial) ; 8 occ_sig occurrence significance (binomial) ; 9 rank rank ; 10 ovl_occ number of overlapping occurrences (discarded from the count) ; 11 forbocc forbidden positions (to avoid self-overlap) #seq id exp_freq occ exp_occ occ_P occ_E occ_sig rank ovl_occ forbocc gaagtctc gaagtctc|gagacttc 0.0000179945646 4 0.18 4e-05 2.9e-01 0.54 1 0 28 ; Host name rsat ; Job started 2026-06-17.143316 ; Job done 2026-06-17.143318 ; Seconds 1.41 ; user 1.41 ; system 0.05 ; cuser 0.13 ; csystem 0.02