; convert-matrix -v 1 -i $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.152625_vDZBfK_pssm_count_matrices.tf -from tf -to tab -return counts -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.152625_vDZBfK_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.152625_vDZBfK_pssm_count_matrices_links.txt
; Input files
; input /var/www/html/rsat/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.152625_vDZBfK_pssm_count_matrices.tf
; Input format tf
; Output files
; output /var/www/html/rsat/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.152625_vDZBfK_pssm_count_matrices_links.txt
; Output format tab
; pseudo-weight 1
a 8 6 2 18 1 1 1 0 0 2 9 7
c 2 2 0 0 0 17 1 0 16 0 1 4
g 5 7 14 0 16 0 15 18 0 0 3 6
t 3 3 2 0 1 0 1 0 2 16 5 1
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.152625_vDZBfK_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.152625_vDZBfK_pssm_count_matrices_logo_m1_rc.png
;
a 6 13 18 18 2 2 1 22 22 1 20 1 2 5
c 4 1 1 0 0 0 21 1 0 18 2 17 10 7
g 3 3 1 0 21 1 0 0 1 0 1 2 3 1
t 10 6 3 5 0 20 1 0 0 4 0 3 8 10
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.152625_vDZBfK_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.152625_vDZBfK_pssm_count_matrices_logo_m2_rc.png
;
a 4 3 16 0 16 0 0 0 6 6
c 0 7 0 0 0 0 0 16 2 2
g 4 5 0 0 0 16 0 0 2 2
t 8 1 0 16 0 0 16 0 6 6
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.152625_vDZBfK_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.152625_vDZBfK_pssm_count_matrices_logo_m3_rc.png
;
a 3 2 1 2 7 0 0 0 0 0 1 1 0 4
c 5 2 9 9 4 0 16 16 0 15 2 10 7 3
g 6 4 2 1 0 15 0 0 16 0 0 2 3 2
t 2 8 4 4 5 1 0 0 0 1 13 3 6 7
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.152625_vDZBfK_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.152625_vDZBfK_pssm_count_matrices_logo_m4_rc.png
;
a 1 4 11 0 0 0 2 1 13 1 6 3
c 4 5 0 0 0 0 0 12 0 0 0 2
g 4 2 0 0 1 13 0 0 0 11 2 2
t 4 2 2 13 12 0 11 0 0 1 5 6
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.152625_vDZBfK_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.152625_vDZBfK_pssm_count_matrices_logo_m5_rc.png
;
a 4 10 22 0 0 24 0 21 4 2 13 5
c 8 4 0 0 0 0 1 2 0 20 6 5
g 2 3 0 24 1 0 1 0 0 0 2 7
t 10 7 2 0 23 0 22 1 20 2 3 7
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.152625_vDZBfK_pssm_count_matrices_logo_m6.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.152625_vDZBfK_pssm_count_matrices_logo_m6_rc.png
;
a 7 3 22 0 0 0 0 22 5 5
c 4 4 0 0 0 0 0 0 6 3
g 5 8 0 22 22 22 0 0 6 8
t 6 7 0 0 0 0 22 0 5 6
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.152625_vDZBfK_pssm_count_matrices_logo_m7.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.152625_vDZBfK_pssm_count_matrices_logo_m7_rc.png
;
a 13 15 46 1 1 7 2 47 45 15 14
c 7 11 1 2 0 0 1 2 5 12 11
g 13 11 3 44 5 42 2 1 1 13 14
t 18 14 1 4 45 2 46 1 0 11 12
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.152625_vDZBfK_pssm_count_matrices_logo_m8.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.152625_vDZBfK_pssm_count_matrices_logo_m8_rc.png
;
a 16 22 51 51 4 49 48 49 4 13 22
c 9 6 1 0 1 0 5 2 2 15 17
g 17 14 3 2 51 5 1 5 1 13 7
t 14 14 1 3 0 2 2 0 49 15 10
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.152625_vDZBfK_pssm_count_matrices_logo_m9.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/06/17//oligo-analysis_2026-06-17.152625_vDZBfK_pssm_count_matrices_logo_m9_rc.png
;
; Host name rsat
; Job started 2026-06-17.152631
; Job done 2026-06-17.152634
; Seconds 0.2
; user 0.2
; system 0.07
; cuser 2.12
; csystem 0.34