; pattern-assembly  -v 1 -subst 1 -toppat 50 -2str -max_asmb_nb 20 -i $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.152659_iu21Lq.tab -o $RSAT/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.152659_iu21Lq.asmb
; Input file	/var/www/html/rsat/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.152659_iu21Lq.tab
; Output file	/var/www/html/rsat/public_html/tmp/www-data/2026/06/17/oligo-analysis_2026-06-17.152659_iu21Lq.asmb
; Input score column           	8
; Output score column          	0
; Strand-insensitive assembly
; Max flanking bases           	1
; Max substitutions            	1
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	0
; Top number of patterns       	50
; Number of input patterns     	30
;

; assembly # 1	seed: gccgc	8 assembled patterns	length 8
; alignt	 rev_cpl	score
agccgct.	.agcggct	2.78
agccgc..	..gcggct	1.59
agccgctc	gagcggct	0.76
.gccgc..	..gcggc.	4.48
.gccgct.	.agcggc.	4.45
.gccgctc	gagcggc.	1.68
..ccgct.	.agcgg..	3.39
..ccgctc	gagcgg..	1.66
agccgctc	gagcggct	4.48	best consensus

; assembly # 2	seed: gtcaacac	10 assembled patterns	length 10
;   alignt	   rev_cpl	score
aagtcaac..	..gttgactt	2.28
aagtcaa...	...ttgactt	1.65
.agtcaaca.	.tgttgact.	2.25
.agtcaa...	...ttgact.	1.69
.agtcaac..	..gttgact.	1.56
..gtcaacac	gtgttgac..	3.26
..gtcaac..	..gttgac..	2.96
..gtcaaca.	.tgttgac..	2.91
..gtcaa...	...ttgac..	0.85
...tcaacac	gtgttga...	0.03
aagtcaacac	gtgttgactt	3.26	best consensus

; assembly # 3	seed: atagtc	2 assembled patterns	length 6
;alignt	rev_cpl	score
atagtc	gactat	1.08
.tagtc	gacta.	0.19
atagtc	gactat	1.08	best consensus

; assembly # 4	seed: cccgccgc	7 assembled patterns	length 10
;   alignt	   rev_cpl	score
cccgccgc..	..gcggcggg	0.96
cccgccg...	...cggcggg	0.40
...gccgc..	..gcggc...	4.48
...gccgct.	.agcggc...	4.45
...gccgctc	gagcggc...	1.68
....ccgct.	.agcgg....	3.39
....ccgctc	gagcgg....	1.66
cccgccgctc	gagcggcggg	4.48	best consensus

; assembly # 5	seed: attgtcag	1 assembled patterns	length 8
; alignt	 rev_cpl	score
attgtcag	ctgacaat	0.89
attgtcag	ctgacaat	0.89	best consensus

; assembly # 6	seed: acgat	1 assembled patterns	length 5
;alignt	rev_cpl	score
acgat	atcgt	0.56
acgat	atcgt	0.56	best consensus

; assembly # 7	seed: agtatatc	1 assembled patterns	length 8
; alignt	 rev_cpl	score
agtatatc	gatatact	0.48
agtatatc	gatatact	0.48	best consensus

; assembly # 8	seed: gagga	1 assembled patterns	length 5
;alignt	rev_cpl	score
gagga	tcctc	0.46
gagga	tcctc	0.46	best consensus

; assembly # 9	seed: agggta	1 assembled patterns	length 6
;alignt	rev_cpl	score
agggta	taccct	0.43
agggta	taccct	0.43	best consensus

; assembly # 10	seed: agtgtaa	1 assembled patterns	length 7
;alignt	rev_cpl	score
agtgtaa	ttacact	0.32
agtgtaa	ttacact	0.32	best consensus

; assembly # 11	seed: aagaaat	1 assembled patterns	length 7
;alignt	rev_cpl	score
aagaaat	atttctt	0.25
aagaaat	atttctt	0.25	best consensus

; assembly # 12	seed: gcagc	1 assembled patterns	length 5
;alignt	rev_cpl	score
gcagc	gctgc	0.05
gcagc	gctgc	0.05	best consensus
; Host name	rsat
; Job started	2026-06-17.152703
; Job done	2026-06-17.152705
; Seconds	1.48
;	user	1.48
;	system	0.01
;	cuser	0
;	csystem	0