RSAT - peak-motifs result

Analysis: Plag1_diffbind (17/06/2026 22:42)

peak-motifs  -v 1 -title Plag1_diffbind -i $RSAT/public_html/tmp/www-data/2026/06/17/peak-motifs.2026-06-17.223219_2026-06-17.223219_7sqMWn/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_vertebrates_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -motif_db footprintDB tf $RSAT/public_html/motif_databases/footprintDB/footprintDB.motif.tf -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/06/17/peak-motifs.2026-06-17.223219_2026-06-17.223219_7sqMWn

motif discovery
oligos_6nt_mkv3	oligos_6nt_mkv3_m1 assembly: cagtgactcagc (sig=75.26; e-value=5.5e-76) RC: gctgagtcactg oligos_6nt_mkv3_m2 assembly: cccgccccgc (sig=60.28; e-value=5.2e-61) RC: gcggggcggg oligos_6nt_mkv3_m3 assembly: ccgccccgccgc (sig=60.28; e-value=5.2e-61) RC: gcggcggggcgg oligos_6nt_mkv3_m4 assembly: ggccccgccccacccca (sig=60.28; e-value=5.2e-61) RC: tggggtggggcggggcc oligos_6nt_mkv3_m5 assembly: ccgagcga (sig=34.79; e-value=1.6e-35) RC: tcgctcgg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	positions_6nt_m1 assembly: gggaggccccaggggcctcc (sig=300; e-value=1e-300) RC: ggaggcccctggggcctccc positions_6nt_m2 assembly: gcccctggggccccaggggc (sig=300; e-value=1e-300) RC: gcccctggggccccaggggc positions_6nt_m3 assembly: agggaggcccccttt (sig=300; e-value=1e-300) RC: aaagggggcctccct positions_6nt_m4 assembly: agaggccccaggggcccagc (sig=300; e-value=1e-300) RC: gctgggcccctggggcctct positions_6nt_m5 assembly: gctgggcccctggggcctca (sig=300; e-value=1e-300) RC: tgaggccccaggggcccagc	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
oligos_7nt_mkv4	oligos_7nt_mkv4_m1 assembly: gtgactcac (sig=47.06; e-value=8.7e-48) RC: gtgagtcac oligos_7nt_mkv4_m2 assembly: cccccacccc (sig=25.11; e-value=7.8e-26) RC: ggggtggggg oligos_7nt_mkv4_m3 assembly: cccctcccc (sig=24.42; e-value=3.8e-25) RC: ggggagggg oligos_7nt_mkv4_m4 assembly: ccgccccgcccgc (sig=23.76; e-value=1.7e-24) RC: gcgggcggggcgg oligos_7nt_mkv4_m5 assembly: agaggccc (sig=19.70; e-value=2e-20) RC: gggcctct	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	positions_7nt_m1 assembly: agaggcccctggggccccag (sig=300; e-value=1e-300) RC: ctggggccccaggggcctct positions_7nt_m2 assembly: gagaggccccctggggcctc (sig=300; e-value=1e-300) RC: gaggccccagggggcctctc positions_7nt_m3 assembly: aggaggcccctggggcccca (sig=300; e-value=1e-300) RC: tggggccccaggggcctcct positions_7nt_m4 assembly: cccaggggcccctggggcca (sig=300; e-value=1e-300) RC: tggccccaggggcccctggg positions_7nt_m5 assembly: caggggcccctggggcctca (sig=300; e-value=1e-300) RC: tgaggccccaggggcccctg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]

Motif discovery
Motif 1   oligos_6nt_mkv3_m1	k-mer sig=75.26; evalue=5.5e-76 srcagTGACTCAgcah DTGCTGAGTCACTGYS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor srcagTGACTCAgcah Bach1::Mafk MA0591.2 D 12 0.7500 0.858 0.644 NA NA Mafg MA0659.4 D 12 0.7500 0.835 0.626 NA NA MAF::NFE2 MA0501.2 D 11 0.6875 0.874 0.601 NA NA Total matches= 34 (31 more)		[ match table: html text ] [ alignments (logos): html text ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor srcagTGACTCAgcah Jundm2:PB0142.1:JASPAR Jundm2/PB0142.1/JASPAR D 16 1.0000 0.808 0.808 NA NA Jundm2:UP00103A_2:UniPROBE Jundm2/UP00103A_2/UniPROBE D 16 1.0000 0.807 0.807 NA NA Bach1::Mafk:MA0591.1:JASPAR Bach1::Mafk/MA0591.1/JASPAR D 15 0.9375 0.851 0.797 NA NA Total matches= 177 (174 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 478 (19.22%) Max nb of predicted sites per peak: 3  (chr9:14266458-14266858) Mean nb of predicted sites per peak: 1.20	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv3_m2	k-mer sig=60.28; evalue=5.2e-61 ssCCCGCCCCGCss SSGCGGGGCGGGSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ssCCCGCCCCGCss ZBED4 MA2328.1 D 10 0.7143 0.971 0.693 NA NA PATZ1 MA1961.2 R 11 0.7857 0.865 0.679 NA NA SP2 MA0516.3 R 9 0.6429 0.976 0.628 NA NA Total matches= 27 (24 more)		[ match table: html text ] [ alignments (logos): html text ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ssCCCGCCCCGCss Sp2:MA0516.1:JASPAR Sp2/MA0516.1/JASPAR D 14 0.9333 0.814 0.760 NA NA PATZ1:MA1961.1:JASPAR PATZ1/MA1961.1/JASPAR R 12 0.8571 0.847 0.726 NA NA KLF15:MA1513.1:JASPAR KLF15/MA1513.1/JASPAR D 11 0.7857 0.921 0.724 NA NA Total matches= 239 (236 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 568 (22.84%) Max nb of predicted sites per peak: 19  (chr5:77265101-77265501) Mean nb of predicted sites per peak: 3.44	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv3_m3	k-mer sig=60.28; evalue=5.2e-61 ssCCGCcCCGCCgCss SSGCGGCGGGGCGGSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ssCCGCcCCGCCgCss ZBED4 MA2328.1 D 10 0.6250 0.958 0.599 NA NA PATZ1 MA1961.2 R 11 0.6875 0.854 0.587 NA NA SP1 MA0079.5 R 9 0.5625 0.954 0.537 NA NA Total matches= 21 (18 more)		[ match table: html text ] [ alignments (logos): html text ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ssCCGCcCCGCCgCss ZNF571:UN0635.1:JASPAR ZNF571/UN0635.1/JASPAR R 15 0.9375 0.741 0.694 NA NA CRF10.DAP:M0045:AthalianaCistrome CRF10.DAP/M0045/AthalianaCistrome D 15 0.9375 0.725 0.679 NA NA ERF5:MA1225.1:JASPAR ERF5/MA1225.1/JASPAR D 15 0.9375 0.716 0.672 NA NA Total matches= 261 (258 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 558 (22.44%) Max nb of predicted sites per peak: 36  (chr17:56040375-56040775) Mean nb of predicted sites per peak: 5.16	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv3_m4	k-mer sig=60.28; evalue=5.2e-61 ccggCCCCGCCCCrcccccss SSGGGGGYGGGGCGGGGCCGG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ccggCCCCGCCCCrcccccss PATZ1 MA1961.2 R 11 0.5238 0.915 0.479 NA NA KLF5 MA0599.1 D 10 0.4762 0.912 0.434 NA NA ZBED4 MA2328.1 D 10 0.4762 0.911 0.434 NA NA Total matches= 15 (12 more)		[ match table: html text ] [ alignments (logos): html text ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ccggCCCCGCCCCrcccccss SP1:SP1_HUMAN.H10MO.C|M01523:HOCOMOCO SP1/SP1_HUMAN.H10MO.C|M01523/HOCOMOCO R 19 0.9048 0.912 0.825 NA NA SP2_HUMAN.H10MO.C|M01525:SP2_HUMAN.H10MO.C|M01525:HOCOMOCO SP2_HUMAN.H10MO.C|M01525/SP2_HUMAN.H10MO.C|M01525/HOCOMOCO R 19 0.7917 0.903 0.715 NA NA SP3:SP3_HUMAN.H10MO.B|M01526:HOCOMOCO SP3/SP3_HUMAN.H10MO.B|M01526/HOCOMOCO R 18 0.7826 0.913 0.714 NA NA Total matches= 132 (129 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 621 (24.97%) Max nb of predicted sites per peak: 37  (chr5:77265101-77265501) Mean nb of predicted sites per peak: 4.85	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv3_m5	k-mer sig=34.79; evalue=1.6e-35 sssCGAGCGmss SSKCGCTCGSSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor sssCGAGCGmss TCFL5 MA0632.3 R 8 0.6667 0.729 0.486 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor sssCGAGCGmss RSC30:M1789_1.02:CISBP RSC30/M1789_1.02/CISBP R 10 0.8333 0.814 0.678 NA NA E2F3:M0673_1.02:CISBP E2F3/M0673_1.02/CISBP D 10 0.8333 0.774 0.645 NA NA Clamp:MA1700.1:JASPAR Clamp/MA1700.1/JASPAR D 12 0.8571 0.748 0.641 NA NA Total matches= 48 (45 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 347 (13.95%) Max nb of predicted sites per peak: 14  (chr5:33274939-33275339) Mean nb of predicted sites per peak: 2.77	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   positions_6nt_m1	k-mer sig=300; evalue=1e-300 mssgGAGgCCcCaGgGGcCTCcgs SCGGAGGCCCCTGGGGCCTCCSSK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor mssgGAGgCCcCaGgGGcCTCcgs PLAG1 MA0163.1 D 14 0.5833 0.719 0.419 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor mssgGAGgCCcCaGgGGcCTCcgs EBF1:MA0154.4:JASPAR EBF1/MA0154.4/JASPAR D 15 0.6250 0.707 0.442 NA NA PLAG1:MA0163.1:JASPAR PLAG1/MA0163.1/JASPAR D 14 0.5833 0.719 0.419 NA NA Total matches= 2		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 343 (13.79%) Max nb of predicted sites per peak: 28  (chr17:56040375-56040775) Mean nb of predicted sites per peak: 2.88	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   positions_6nt_m2	k-mer sig=300; evalue=1e-300 ssgccccTGGGGCCCCaggggcss SSGCCCCTGGGGCCCCAGGGGCSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ssgccccTGGGGCCCCaggggcss PLAG1 MA0163.1 D 14 0.5833 0.774 0.451 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ssgccccTGGGGCCCCaggggcss PLAG1:MA0163.1:JASPAR PLAG1/MA0163.1/JASPAR D 14 0.5833 0.774 0.451 NA NA Plagl1:MA1615.1:JASPAR Plagl1/MA1615.1/JASPAR R 13 0.5417 0.767 0.416 NA NA TFAP2A:TFAP2A_DBD_3:HumanTF TFAP2A/TFAP2A_DBD_3/HumanTF R 13 0.5417 0.740 0.401 NA NA Total matches= 3		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 353 (14.19%) Max nb of predicted sites per peak: 38  (chr17:56040375-56040775) Mean nb of predicted sites per peak: 4.50	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   positions_6nt_m3	k-mer sig=300; evalue=1e-300 ssvggGAGGCCCCcttbss SSVAAGGGGGCCTCCCBSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ssvggGAGGCCCCcttbss Zfx MA0146.3 R 10 0.5263 0.775 0.408 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ssvggGAGGCCCCcttbss Zfx:MA0146.2:JASPAR Zfx/MA0146.2/JASPAR R 14 0.7368 0.721 0.531 NA NA Zfx:MA0146.1:JASPAR Zfx/MA0146.1/JASPAR R 14 0.7368 0.719 0.530 NA NA ZFX_HUMAN.H10MO.C|M01615:ZFX_HUMAN.H10MO.C|M01615:HOCOMOCO ZFX_HUMAN.H10MO.C|M01615/ZFX_HUMAN.H10MO.C|M01615/HOCOMOCO D 16 0.7273 0.708 0.515 NA NA Total matches= 23 (20 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 451 (18.13%) Max nb of predicted sites per peak: 23  (chr17:56040375-56040775) Mean nb of predicted sites per peak: 1.64	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   positions_6nt_m4	k-mer sig=300; evalue=1e-300 ssaGAGGCCCCAGgGgCcCmssss SSSSKGGGCCCCTGGGGCCTCTSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ssaGAGGCCCCAGgGgCcCmssss ZNF320 MA1976.2 R 20 0.8333 0.719 0.599 NA NA PLAG1 MA0163.1 D 14 0.5833 0.716 0.418 NA NA Total matches= 2		[ match table: html text ] [ alignments (logos): html text ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ssaGAGGCCCCAGgGgCcCmssss ZNF320:MA1976.2:JASPAR ZNF320/MA1976.2/JASPAR R 20 0.8333 0.719 0.599 NA NA ZNF320:MA1976.1:JASPAR ZNF320/MA1976.1/JASPAR R 22 0.7586 0.708 0.537 NA NA TCP3_BAD1_WAB_B73_1_m1:EEAD0520:EEADannot TCP3_BAD1_WAB_B73_1_m1/EEAD0520/EEADannot R 15 0.6250 0.704 0.440 NA NA Total matches= 9 (6 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 386 (15.52%) Max nb of predicted sites per peak: 23  (chr17:56040375-56040775) Mean nb of predicted sites per peak: 2.47	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   positions_6nt_m5	k-mer sig=300; evalue=1e-300 vssskGgGcCcCtGGGGCCTCmss SSKGAGGCCCCAGGGGCCCMSSSB	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor vssskGgGcCcCtGGGGCCTCmss ZNF320 MA1976.2 D 20 0.8333 0.702 0.585 NA NA PLAG1 MA0163.1 R 14 0.5833 0.722 0.421 NA NA Total matches= 2		[ match table: html text ] [ alignments (logos): html text ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor vssskGgGcCcCtGGGGCCTCmss ZNF320:MA1976.2:JASPAR ZNF320/MA1976.2/JASPAR D 20 0.8333 0.702 0.585 NA NA TCP15_Mo17_1:EEAD0515:EEADannot TCP15_Mo17_1/EEAD0515/EEADannot R 14 0.5833 0.767 0.447 NA NA TCP3_BAD1_WAB_B73_1_m1:EEAD0520:EEADannot TCP3_BAD1_WAB_B73_1_m1/EEAD0520/EEADannot D 15 0.6250 0.714 0.446 NA NA Total matches= 7 (4 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 390 (15.68%) Max nb of predicted sites per peak: 22  (chr19:7417356-7417756) Mean nb of predicted sites per peak: 2.42	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 11   oligos_7nt_mkv4_m1	k-mer sig=47.06; evalue=8.7e-48 ywgTGACTCAcwm KWGTGAGTCACWR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ywgTGACTCAcwm Bach1::Mafk MA0591.2 D 12 0.9231 0.792 0.731 NA NA FOSL2 MA0478.2 D 10 0.7692 0.949 0.730 NA NA Mafg MA0659.4 D 12 0.9231 0.789 0.728 NA NA Total matches= 36 (33 more)		[ match table: html text ] [ alignments (logos): html text ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ywgTGACTCAcwm FOS::JUND:MA1141.1:JASPAR FOS::JUND/MA1141.1/JASPAR R 13 1.0000 0.939 0.939 NA NA FOSL1::JUN:MA1128.1:JASPAR FOSL1::JUN/MA1128.1/JASPAR D 13 1.0000 0.936 0.936 NA NA FOSL1:MA0477.2:JASPAR FOSL1/MA0477.2/JASPAR D 13 1.0000 0.932 0.932 NA NA Total matches= 219 (216 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 530 (21.31%) Max nb of predicted sites per peak: 4  (chr18:15042712-15043112) Mean nb of predicted sites per peak: 1.38	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 12   oligos_7nt_mkv4_m2	k-mer sig=25.11; evalue=7.8e-26 cccCCCCACCCCcc GGGGGGTGGGGGGG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor cccCCCCACCCCcc PATZ1 MA1961.2 R 11 0.7857 0.936 0.736 NA NA KLF5 MA0599.1 D 10 0.7143 0.900 0.643 NA NA ZNF281 MA1630.3 R 10 0.7143 0.888 0.634 NA NA Total matches= 32 (29 more)		[ match table: html text ] [ alignments (logos): html text ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor cccCCCCACCCCcc CG7368:CG7368_SOLEXA_2.5_FBgn0036179:FlyZincFinger CG7368/CG7368_SOLEXA_2.5_FBgn0036179/FlyZincFinger R 14 0.9333 0.903 0.843 NA NA GC:POL003.1:JASPAR GC/POL003.1/JASPAR R 14 1.0000 0.814 0.814 NA NA ZNF467:UN0326.1:JASPAR ZNF467/UN0326.1/JASPAR D 14 0.9333 0.861 0.804 NA NA Total matches= 316 (313 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 655 (26.34%) Max nb of predicted sites per peak: 16  (chr11:97744461-97744861) Mean nb of predicted sites per peak: 2.12	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 13   oligos_7nt_mkv4_m3	k-mer sig=24.42; evalue=3.8e-25 csCCCCTCCCCcc GGGGGGAGGGGSG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor csCCCCTCCCCcc PATZ1 MA1961.2 R 11 0.8462 0.955 0.808 NA NA ZNF148 MA1653.2 D 10 0.7692 0.983 0.756 NA NA ZNF281 MA1630.3 R 10 0.7692 0.955 0.734 NA NA Total matches= 31 (28 more)		[ match table: html text ] [ alignments (logos): html text ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor csCCCCTCCCCcc ZNF148:MA1653.1:JASPAR ZNF148/MA1653.1/JASPAR D 12 0.9231 0.982 0.906 NA NA PATZ1:MA1961.1:JASPAR PATZ1/MA1961.1/JASPAR R 12 0.9231 0.954 0.881 NA NA ZNF281:MA1630.2:JASPAR ZNF281/MA1630.2/JASPAR R 12 0.9231 0.953 0.879 NA NA Total matches= 272 (269 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 623 (25.05%) Max nb of predicted sites per peak: 10  (chr19:16804519-16804919) Mean nb of predicted sites per peak: 1.77	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 14   oligos_7nt_mkv4_m4	k-mer sig=23.76; evalue=1.7e-24 csccgCCCCGCCCscss SSGSGGGCGGGGCGGSG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor csccgCCCCGCCCscss PATZ1 MA1961.2 R 11 0.6471 0.904 0.585 NA NA ZBED4 MA2328.1 D 10 0.5882 0.956 0.563 NA NA SP3 MA0746.3 D 11 0.6471 0.831 0.538 NA NA Total matches= 29 (26 more)		[ match table: html text ] [ alignments (logos): html text ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor csccgCCCCGCCCscss SP3:SP3_HUMAN.H10MO.B|M01526:HOCOMOCO SP3/SP3_HUMAN.H10MO.B|M01526/HOCOMOCO R 17 0.8500 0.894 0.760 NA NA SP2:SP2_2:HT-SELEX2 SP2/SP2_2/HT-SELEX2 D 17 1.0000 0.703 0.703 NA NA SP1:SP1_HUMAN.H10MO.C|M01523:HOCOMOCO SP1/SP1_HUMAN.H10MO.C|M01523/HOCOMOCO R 16 0.8000 0.865 0.692 NA NA Total matches= 230 (227 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 596 (23.96%) Max nb of predicted sites per peak: 38  (chr5:77265101-77265501) Mean nb of predicted sites per peak: 5.29	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 15   oligos_7nt_mkv4_m5	k-mer sig=19.70; evalue=2e-20 msAGAGGCCChg CDGGGCCTCTSK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor msAGAGGCCChg ZNF692 MA1986.2 D 8 0.6667 0.782 0.522 NA NA Zfx MA0146.3 R 8 0.5714 0.889 0.508 NA NA ZNF770 MA2099.1 R 8 0.6667 0.746 0.498 NA NA Total matches= 10 (7 more)		[ match table: html text ] [ alignments (logos): html text ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor msAGAGGCCChg NCU05061:UN0091.1:JASPAR NCU05061/UN0091.1/JASPAR D 10 0.8333 0.941 0.784 NA NA ZNF770:UN0225.1:JASPAR ZNF770/UN0225.1/JASPAR R 12 1.0000 0.731 0.731 NA NA NCU05024:M0476_1.02:CISBP NCU05024/M0476_1.02/CISBP D 10 0.8333 0.866 0.722 NA NA Total matches= 49 (46 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 468 (18.82%) Max nb of predicted sites per peak: 9  (chr7:141508003-141508403) Mean nb of predicted sites per peak: 1.14	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 16   positions_7nt_m1	k-mer sig=300; evalue=1e-300 scaGAggCCcCTGGGGCCCCagsg CSCTGGGGCCCCAGGGGCCTCTGS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor scaGAggCCcCTGGGGCCCCagsg ZNF320 MA1976.2 R 20 0.8333 0.716 0.597 NA NA PLAG1 MA0163.1 R 14 0.5833 0.782 0.456 NA NA Total matches= 2		[ match table: html text ] [ alignments (logos): html text ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor scaGAggCCcCTGGGGCCCCagsg ZNF320:MA1976.2:JASPAR ZNF320/MA1976.2/JASPAR R 20 0.8333 0.716 0.597 NA NA PLAG1:MA0163.1:JASPAR PLAG1/MA0163.1/JASPAR R 14 0.5833 0.782 0.456 NA NA EBF1:MA0154.4:JASPAR EBF1/MA0154.4/JASPAR R 15 0.6250 0.713 0.446 NA NA Total matches= 5 (2 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 323 (12.99%) Max nb of predicted sites per peak: 18  (chr17:56040375-56040775) Mean nb of predicted sites per peak: 1.88	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 17   positions_7nt_m2	k-mer sig=300; evalue=1e-300 sgsaGAGGCCcCstGgGGcCTCgs SCGAGGCCCCASGGGGCCTCTSCS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor sgsaGAGGCCcCstGgGGcCTCgs PLAG1 MA0163.1 R 14 0.5833 0.804 0.469 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor sgsaGAGGCCcCstGgGGcCTCgs PLAG1:MA0163.1:JASPAR PLAG1/MA0163.1/JASPAR R 14 0.5833 0.804 0.469 NA NA Plagl1:MA1615.1:JASPAR Plagl1/MA1615.1/JASPAR D 13 0.5417 0.782 0.424 NA NA CTCFL:MA1102.1:JASPAR CTCFL/MA1102.1/JASPAR R 14 0.5833 0.713 0.416 NA NA Total matches= 3		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 312 (12.55%) Max nb of predicted sites per peak: 9  (chr5:33274939-33275339) Mean nb of predicted sites per peak: 2.13	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 18   positions_7nt_m3	k-mer sig=300; evalue=1e-300 csmgGAGGCCcCTGGGgcCCCAgg CCTGGGGCCCCAGGGGCCTCCKSG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor csmgGAGGCCcCTGGGgcCCCAgg PLAG1 MA0163.1 R 14 0.5833 0.771 0.449 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor csmgGAGGCCcCTGGGgcCCCAgg PLAG1:MA0163.1:JASPAR PLAG1/MA0163.1/JASPAR R 14 0.5833 0.771 0.449 NA NA EBF1:MA0154.4:JASPAR EBF1/MA0154.4/JASPAR R 15 0.6250 0.705 0.441 NA NA TFAP2A:TFAP2A_DBD_3:HumanTF TFAP2A/TFAP2A_DBD_3/HumanTF D 13 0.5417 0.739 0.400 NA NA Total matches= 3		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 312 (12.55%) Max nb of predicted sites per peak: 14  (chr17:56040375-56040775) Mean nb of predicted sites per peak: 1.68	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 19   positions_7nt_m4	k-mer sig=300; evalue=1e-300 cssscaGGGGCCcCtGGGGcCrsg CSYGGCCCCAGGGGCCCCTGSSSG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor cssscaGGGGCCcCtGGGGcCrsg ZNF320 MA1976.2 D 19 0.7600 0.724 0.550 NA NA PLAG1 MA0163.1 D 14 0.5833 0.740 0.432 NA NA Total matches= 2		[ match table: html text ] [ alignments (logos): html text ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor cssscaGGGGCCcCtGGGGcCrsg ZNF320:MA1976.2:JASPAR ZNF320/MA1976.2/JASPAR D 19 0.7600 0.724 0.550 NA NA TCP11_Mo17_1:EEAD0513:EEADannot TCP11_Mo17_1/EEAD0513/EEADannot R 15 0.6250 0.741 0.463 NA NA ZNF320:MA1976.1:JASPAR ZNF320/MA1976.1/JASPAR D 20 0.6452 0.705 0.455 NA NA Total matches= 11 (8 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 385 (15.48%) Max nb of predicted sites per peak: 36  (chr17:56040375-56040775) Mean nb of predicted sites per peak: 2.94	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 20   positions_7nt_m5	k-mer sig=300; evalue=1e-300 ygcaGgGGCCcCtGgGGCCTCasg CSTGAGGCCCCAGGGGCCCCTGCR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ygcaGgGGCCcCtGgGGCCTCasg PLAG1 MA0163.1 D 14 0.5833 0.737 0.430 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ygcaGgGGCCcCtGgGGCCTCasg PLAG1:MA0163.1:JASPAR PLAG1/MA0163.1/JASPAR D 14 0.5833 0.737 0.430 NA NA Plagl1:MA1615.1:JASPAR Plagl1/MA1615.1/JASPAR D 13 0.5417 0.761 0.412 NA NA TFAP2A:TFAP2A_DBD_3:HumanTF TFAP2A/TFAP2A_DBD_3/HumanTF D 13 0.5417 0.740 0.401 NA NA Total matches= 3		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 316 (12.71%) Max nb of predicted sites per peak: 21  (chr17:56040375-56040775) Mean nb of predicted sites per peak: 1.89	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title Plag1_diffbind -i $RSAT/public_html/tmp/www-data/2026/06/17/peak-motifs.2026-06-17.223219_2026-06-17.223219_7sqMWn/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_vertebrates_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -motif_db footprintDB tf $RSAT/public_html/motif_databases/footprintDB/footprintDB.motif.tf -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/06/17/peak-motifs.2026-06-17.223219_2026-06-17.223219_7sqMWn

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