/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/alignment_table.tab


id name cluster strand offset_up offset_down width aligned_consensus aligned_consensus_rc
Collection_1_m56_QNSSH_SahR QNSSH_SahR cluster_1 D 1 1 22 +ATATCAAARhdYTTTGATAT+ +ATATCAAARHDYTTTGATAT+
Collection_1_m57_QSGSH_SahR QSGSH_SahR cluster_1 D 1 1 22 +ATATCAAAAwwTTTTGATAT+ +ATATCAAAAWWTTTTGATAT+
Collection_1_m32_QSRSF_ArsR QSRSF_ArsR cluster_1 D 3 3 22 +++ATCAAmwwwwkTTGAT+++ +++ATCAAMWWWWKTTGAT+++
Collection_1_m42_QSKSF_ArsR QSKSF_ArsR cluster_1 D 3 3 22 +++ATCAArwwwwyTTGAT+++ +++ATCAARWWWWYTTGAT+++
Collection_1_m54_QPKSF_ArsR QPKSF_ArsR cluster_1 D 3 3 22 +++ATCAAWTKMAWTTGAT+++ +++ATCAAwtkmawTTGAT+++
Collection_1_m47_QSRSR_SahR QSRSR_SahR cluster_1 D 1 1 22 +ATATCAAGWTAWCTTGATAT+ +ATATCAAgwTAwcTTGATAT+
Collection_1_m5_QSKSY_ArsR QSKSY_ArsR cluster_1 D 0 0 22 TWMATCAAAWWWWTTTGATKWA TwmATCAAawwwwtTTGATkwA
Collection_1_m37_VSTSK_ArsR VSTSK_ArsR cluster_2 D 1 1 22 +aTTTkGCyAwwTrGCmAAAt+ +ATTTKGCYAWWTRGCMAAAT+
Collection_1_m48_MSTSK_ArsR MSTSK_ArsR cluster_2 D 1 1 22 +ATTTKGCyAwwTrGCMAAAT+ +ATTTKGCYAWWTRGCMAAAT+
Collection_1_m45_MSTSR_ArsR MSTSR_ArsR cluster_2 D 1 1 22 +AYTTKDYHAWWTDRHMAART+ +AYTTKdYhAwwTdRhMAART+
Collection_1_m21_ISTSK_ArsR ISTSK_ArsR cluster_2 D 1 1 22 +RTTTKSMHAWWTDKSMAAAY+ +rTTTksmhAwwTdksmAAAy+
Collection_1_m23_QSKSR_ArsR2 QSKSR_ArsR2 cluster_2 D 1 1 22 +ATTTKKMHADHTDKMMAAAT+ +ATTTkKmhAdhTdkMmAAAT+
Collection_1_m36_FSTSK_ArsR FSTSK_ArsR cluster_2 D 1 1 22 +RYTTGSHMAWWTKDSCAARY+ +RyTTGShmAWWTkdSCAArY+
Collection_1_m2_KPSSH_SdpR KPSSH_SdpR cluster_2 D 0 0 22 TATTTAGAyAwwTrTCTAAATA TATTTAGAYAWWTRTCTAAATA
Collection_1_m39_KPSSQ_SdpR KPSSQ_SdpR cluster_2 D 1 1 22 +AWTTArkWAWWTWmyTAAWT+ +AWTTARKWAWWTWMYTAAWT+
Collection_1_m16_QSSSH_CzrA QSSSH_CzrA cluster_3 D 2 2 26 ++yRTATGAAyRWWYrTTCATAYr++ ++YRTATGAAYRWWYRTTCATAYR++
Collection_1_m33_QSASH_CzrA QSASH_CzrA cluster_3 D 2 2 26 ++CATATGAAyAwwTrTTCATATG++ ++CATATGAAYAWWTRTTCATATG++
Collection_1_m31_ESASH_SmtB ESASH_SmtB cluster_3 D 0 0 26 AAyAycTGAAyAryTrTTCAgrTrTT AAYAYCTGAAYARYTRTTCAGRTRTT
Collection_1_m40_QSNSH_CzrA QSNSH_CzrA cluster_3 D 0 0 26 WATATATGAAyAwwTrTTCATATATW WATATATGAAYAWWTRTTCATATATW
Collection_1_m50_QSLSH_CzcR2 QSLSH_CzcR2 cluster_3 D 3 3 26 +++ATATGAwwAyrTwwTCATAT+++ +++ATATGAWWAYRTWWTCATAT+++
Collection_1_m59_QSVSH_CzcR2 QSVSH_CzcR2 cluster_3 D 3 3 26 +++ATATGTTrwyrwyAACATAT+++ +++ATATGTTRWYRWYAACATAT+++
Collection_1_m12_QTTSH_CzrA QTTSH_CzrA cluster_3 D 2 2 26 ++YATATGWKYATATRMWCATATR++ ++yATATGwkyATATrmwCATATr++
Collection_1_m1_QPKSR_ArsR QPKSR_ArsR cluster_3 D 2 2 26 ++tATATAyGawwwwtCrTATATa++ ++TATATAYGAWWWWTCRTATATA++
Collection_1_m19_QPSSQ_AseR QPSSQ_AseR cluster_3 D 2 2 26 ++TATATWARyAWWTrYTWATATA++ ++TATATWARYAWWTRYTWATATA++
Collection_1_m3_QPASQ_AseR QPASQ_AseR cluster_3 D 0 0 26 AWTAYATAAGYMWWKRCTTATRTAWT awtAyATAAGymwwkrCTTATrTawt
Collection_1_m6_QSTSH_CzrA QSTSH_CzrA cluster_3 D 1 1 26 +WHATATTDAYAWWTRTHAATATDW+ +WhATATtdayAwwTrthaATATdW+
Collection_1_m34_QPRSR_SahR QPRSR_SahR cluster_3 D 3 3 26 +++AYATAAAGATATCTTTATRT+++ +++AyATAAAGATATCTTTATrT+++
Collection_1_m18_QKAIG_Phr QKAIG_Phr cluster_4 D 0 0 23 WTWwrTAACwwwwwGTTAywWAW WTWWRTAACWWWWWGTTAYWWAW
Collection_1_m55_QKAIE_Phr QKAIE_Phr cluster_4 D 0 0 23 TwwwrTAACwwwwwGTTAywwwA TWWWRTAACWWWWWGTTAYWWWA
Collection_1_m17_PKVLE_Phr PKVLE_Phr cluster_4 D 0 0 23 dwTmCTAACWYwRWGTTAGkAwh DWTMCTAACWYWRWGTTAGKAWH
Collection_1_m53_PKAID_Phr PKAID_Phr cluster_4 D 0 0 23 dwyAcTAACwwwwwGTTAgTrwh DWYACTAACWWWWWGTTAGTRWH
Collection_1_m43_QKALE_Phr QKALE_Phr cluster_4 D 0 0 23 TTTARTWACYWWWRGTWAYTAAA TTTArTwACywwwrGTwAyTAAA
Collection_1_m10_PKVIE_Phr PKVIE_Phr cluster_4 D 0 0 23 WYTACTAACYWWWRGTTAGTARW WYTACTAACywwwrGTTAGTARW
Collection_1_m15_PKAIE_Phr PKAIE_Phr cluster_4 D 0 0 23 MASAYTAACWWWWWGTTARTSTK masAYTAACwwwwwGTTARTstk
Collection_1_m25_PKAIS_Phr PKAIS_Phr cluster_4 D 0 0 23 RWTRSTAACYAWTRGTTASYAWY rwTrsTAACyAwTrGTTAsyAwy
Collection_1_m52_PKALE_Phr PKALE_Phr cluster_4 D 0 0 23 NWWMCTAACWTWAWGTTAGKWWN nwWMCTAACwTwAwGTTAGKWwn
Collection_1_m44_QQTSF_YdfF QQTSF_YdfF cluster_5 D 1 1 18 +TTCrATkwwmATyGAA+ +TTCRATKWWMATYGAA+
Collection_1_m51_PQTSF_YdfF PQTSF_YdfF cluster_5 D 1 1 18 +TTCrAYkATmRTyGAA+ +TTCRAYKATMRTYGAA+
Collection_1_m41_KSTSH_YczG KSTSH_YczG cluster_5 D 0 0 18 GTTCGAWDATHWTCGAAC GTTCGAWdAThWTCGAAC
Collection_1_m13_RTNSN_CadR RTNSN_CadR cluster_6 D 0 0 16 KWCASCAbvTGSTGWM KWCASCABVTGSTGWM
Collection_1_m58_RSNSN_CadR RSNSN_CadR cluster_6 D 0 0 16 TTCAGCryryGCTGAA TTCAGCRYRYGCTGAA
Collection_1_m22_QPTSY_Caur_3587 QPTSY_Caur_3587 cluster_7 D 0 0 20 AtATTGAAwwwwTTCAATaT ATATTGAAWWWWTTCAATAT
Collection_1_m24_QPTSH_ArsR QPTSH_ArsR cluster_7 D 0 0 20 ATATyGAyrryyrTCrATAT ATATYGAYRRYYRTCRATAT
Collection_1_m35_QSTSQ_YbzH QSTSQ_YbzH cluster_7 D 0 0 20 ATATCGWAATATTWCGATAT ATATCGwaATATtwCGATAT
Collection_1_m9_GTNSF_ArsR3 GTNSF_ArsR3 cluster_8 D 0 0 22 YWWKKCAAYwWWwRTTGMMWWR YWWKKCAAYWWWWRTTGMMWWR
Collection_1_m14_ASNSF_ArsR3_2 ASNSF_ArsR3_2 cluster_8 D 0 0 22 YAvKhCAAYrhdyRTTGdMbTR YAVKHCAAYRHDYRTTGDMBTR
Collection_1_m4_QSASQ_HlyU QSASQ_HlyU cluster_9 D 2 2 26 ++TAwATTAGwwwwwwCTAATwTA++ ++TAWATTAGWWWWWWCTAATWTA++
Collection_1_m7_ASASQ_YgaV ASASQ_YgaV cluster_9 D 0 0 26 ytTAaTTwAGwwwwwwCTwAAtTAar YTTAATTWAGWWWWWWCTWAATTAAR
Collection_1_m26_VPTSA_Cg1831 VPTSA_Cg1831 cluster_10 D 0 0 20 AsTCAAwCrssyGwTTGAsT ASTCAAWCRSSYGWTTGAST
Collection_1_m29_LPTSA_Cg1831 LPTSA_Cg1831 cluster_10 D 0 0 20 AsTCAAATGATCATTTGAsT ASTCAAATGATCATTTGAST
Collection_1_m27_PSTSH_DMR_39480 PSTSH_DMR_39480 cluster_11 D 0 0 22 kWdTTCGAMAbvTKTCGAAhWm KWDTTCGAMABVTKTCGAAHWM
Collection_1_m60_ASTSK_Ddes_1264 ASTSK_Ddes_1264 cluster_11 D 0 0 22 YATTTCGTYvhdbRACGAAATR YATTTCGTYVHDBRACGAAATR
Collection_1_m30_VSASH_SmtB VSASH_SmtB cluster_12 D 0 0 22 yrMTTGAWYARYTRWTCAAKyr YRMTTGAWYARYTRWTCAAKYR
Collection_1_m20_QPLSQ_Znr QPLSQ_Znr cluster_13 D 0 0 18 wyyAGCAmkmkTGCTrrw WYYAGCAMKMKTGCTRRW
Collection_1_m38_ASHSQ_SutR ASHSQ_SutR cluster_14 D 0 0 16 ATGATGrWWyCATCAT ATGATGRWWYCATCAT
Collection_1_m46_QPLSQ_Znr QPLSQ_Znr cluster_15 D 0 0 18 CATGCrysatsryGCATG CATGCRYSATSRYGCATG
Collection_1_m8_RTASH_DESPIG_02495 RTASH_DESPIG_02495 cluster_16 D 0 0 22 taAAACTArwwwwyTAGTTTta TAAAACTARWWWWYTAGTTTTA
Collection_1_m11_AAGRR_SufR AAGRR_SufR cluster_17 D 0 0 24 TTAsrmmACAhWWdTGTkkysTAA TTASRMMACAHWWDTGTKKYSTAA
Collection_1_m28_QPRST_SamR QPRST_SamR cluster_18 D 0 0 24 ATCycTtyATCssGATraAgrGAT ATCYCTTYATCSSGATRAAGRGAT
Collection_1_m49_KSTSQ_DMR_45340 KSTSQ_DMR_45340 cluster_19 D 0 0 21 TwGTTCskwwwwwmsGAACwA TWGTTCSKWWWWWMSGAACWA