rsync -ruptl /var/www/html/rsat/perl-scripts/lib/js /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ


rsync -ruptl /var/www/html/rsat/public_html/images/program_icons/matrix-clustering_icons /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_query_matrices.meme -from meme -to tf -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/Collection_1_input_motifs_processed_1.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/Collection_1_input_motifs_processed_1.tf -from tf -to transfac -prefix_id Collection_1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/Collection_1_input_motifs_processed.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/Collection_1_input_motifs_processed.tf  > /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/input_motifs_processed.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/input_motifs_processed.tf -split -from tf -to tf -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/motif


 cat /var/www/html/rsat/R-scripts/matrix-clustering.R | /usr/bin/R --slave --no-save --no-restore --no-environ --args " infile = '/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/pairwise_compa.tab'; hclust.method = 'average'; description.file = '/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/pairwise_compa_matrix_descriptions.tab'; distance.table = '/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/distance_table.tab'; alignment.file = '/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/alignment_table.tab'; verbosity = 0; metric = 'Ncor'; heatmap.color.palette = 'YlOrRd'; heatmap.color.classes = '9'; export.newick = 0; radial.only = 0; draw.heatmap = 1; draw.consensus = 0; pos.hclust.in.heatmap = 'column'; lthsp = 'Ncor_0.55_cor_0.6_'; out.prefix = '/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering'; "


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/cluster_2_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/cluster_2_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/cluster_1_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/cluster_1_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/cluster_3_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/cluster_3_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/cluster_4_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/cluster_4_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/cluster_5_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/cluster_5_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/cluster_6_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/cluster_6_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/cluster_7_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/cluster_7_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/cluster_8_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/cluster_8_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/cluster_9_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/cluster_9_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/cluster_10_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/cluster_10_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/cluster_11_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/cluster_11_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/cluster_12_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/cluster_12_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/cluster_13_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/cluster_13_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/cluster_14_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/cluster_14_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/cluster_15_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/cluster_15_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/cluster_16_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/cluster_16_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/cluster_17_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/cluster_17_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/cluster_18_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/cluster_18_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/cluster_19_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/cluster_19_transfac_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m56_QNSSH_SahR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m57_QSGSH_SahR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m32_QSRSF_ArsR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m42_QSKSF_ArsR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m26_VPTSA_Cg1831_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m29_LPTSA_Cg1831_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_1/cluster_10_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m27_PSTSH_DMR_39480_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m60_ASTSK_Ddes_1264_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_1/cluster_11_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m54_QPKSF_ArsR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m32_QSRSF_ArsR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m42_QSKSF_ArsR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_1/cluster_11_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_1/cluster_11_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_1/cluster_10_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_1/cluster_10_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100212_PndbYL


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_1/cluster_11_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100212_rZwfVf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100212_7UgS62


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_1/cluster_10_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100212_iF91sR


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100212_zkApzm


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_1/cluster_11_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_1/cluster_10_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m47_QSRSR_SahR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m56_QNSSH_SahR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m57_QSGSH_SahR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m5_QSKSY_ArsR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m47_QSRSR_SahR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m56_QNSSH_SahR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m57_QSGSH_SahR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_5/cluster_1_node_5_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m54_QPKSF_ArsR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m32_QSRSF_ArsR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m42_QSKSF_ArsR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m5_QSKSY_ArsR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m47_QSRSR_SahR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m56_QNSSH_SahR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m57_QSGSH_SahR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_6/cluster_1_node_6_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_5/cluster_1_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_5/cluster_1_node_5_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_6/cluster_1_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_6/cluster_1_node_6_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100213_fdAWTX


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_5/cluster_1_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100213_dywFlE


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_6/cluster_1_nb_motifs_7.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100213_2Rfcax


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_6/cluster_1_node_6_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_5/cluster_1_node_5_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m30_VSASH_SmtB_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_12/cluster_12_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m20_QPLSQ_Znr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_13/cluster_13_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_12/cluster_12_matrices_temp.tf -from tf -to tf  -attr name cluster_12 -attr accession cluster_12 -set_attr merged_AC 'Collection_1:::VSASH_SmtB' -set_attr merged_ID 'VSASH_SmtB' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_12/cluster_12_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_13/cluster_13_matrices_temp.tf -from tf -to tf  -attr name cluster_13 -attr accession cluster_13 -set_attr merged_AC 'Collection_1:::QPLSQ_Znr' -set_attr merged_ID 'QPLSQ_Znr' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_13/cluster_13_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_13/cluster_13_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_12/cluster_12_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m38_ASHSQ_SutR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_14/cluster_14_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m46_QPLSQ_Znr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_15/cluster_15_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m8_RTASH_DESPIG_02495_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_16/cluster_16_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_15/cluster_15_matrices_temp.tf -from tf -to tf  -attr name cluster_15 -attr accession cluster_15 -set_attr merged_AC 'Collection_1:::QPLSQ_Znr' -set_attr merged_ID 'QPLSQ_Znr' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_15/cluster_15_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_16/cluster_16_matrices_temp.tf -from tf -to tf  -attr name cluster_16 -attr accession cluster_16 -set_attr merged_AC 'Collection_1:::RTASH_DESPIG_02495' -set_attr merged_ID 'RTASH_DESPIG_02495' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_16/cluster_16_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_14/cluster_14_matrices_temp.tf -from tf -to tf  -attr name cluster_14 -attr accession cluster_14 -set_attr merged_AC 'Collection_1:::ASHSQ_SutR' -set_attr merged_ID 'ASHSQ_SutR' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_14/cluster_14_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_14/cluster_14_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_16/cluster_16_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_15/cluster_15_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m11_AAGRR_SufR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_17/cluster_17_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m28_QPRST_SamR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_18/cluster_18_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m49_KSTSQ_DMR_45340_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_19/cluster_19_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_17/cluster_17_matrices_temp.tf -from tf -to tf  -attr name cluster_17 -attr accession cluster_17 -set_attr merged_AC 'Collection_1:::AAGRR_SufR' -set_attr merged_ID 'AAGRR_SufR' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_17/cluster_17_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_18/cluster_18_matrices_temp.tf -from tf -to tf  -attr name cluster_18 -attr accession cluster_18 -set_attr merged_AC 'Collection_1:::QPRST_SamR' -set_attr merged_ID 'QPRST_SamR' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_18/cluster_18_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_19/cluster_19_matrices_temp.tf -from tf -to tf  -attr name cluster_19 -attr accession cluster_19 -set_attr merged_AC 'Collection_1:::KSTSQ_DMR_45340' -set_attr merged_ID 'KSTSQ_DMR_45340' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_19/cluster_19_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_19/cluster_19_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_17/cluster_17_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_18/cluster_18_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m37_VSTSK_ArsR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m48_MSTSK_ArsR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m16_QSSSH_CzrA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m33_QSASH_CzrA_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m31_ESASH_SmtB_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m40_QSNSH_CzrA_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m17_PKVLE_Phr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m53_PKAID_Phr_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m18_QKAIG_Phr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m55_QKAIE_Phr_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m50_QSLSH_CzcR2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m59_QSVSH_CzcR2_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_3/cluster_3_node_3_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m45_MSTSR_ArsR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m37_VSTSK_ArsR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m48_MSTSK_ArsR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m21_ISTSK_ArsR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m45_MSTSR_ArsR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m37_VSTSK_ArsR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m48_MSTSK_ArsR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m43_QKALE_Phr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m18_QKAIG_Phr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m55_QKAIE_Phr_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_node_3_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_3/cluster_3_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_3/cluster_3_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100217_RAk0qt


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100217_Upgdb2


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100217_MWKRYJ


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100217_v6BBPV


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100217_DhGXS1


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100217_Ztbgjf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100217_qC7QsI


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_3/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100217_PzopsE


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100217_Qi0OEO


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_3/cluster_3_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m19_QPSSQ_AseR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m1_QPKSR_ArsR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_5/cluster_3_node_5_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m2_KPSSH_SdpR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m39_KPSSQ_SdpR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_6/cluster_2_node_6_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m12_QTTSH_CzrA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m16_QSSSH_CzrA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m33_QSASH_CzrA_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_4/cluster_3_node_4_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m10_PKVIE_Phr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m17_PKVLE_Phr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m53_PKAID_Phr_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_4/cluster_4_node_4_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_5/cluster_3_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_5/cluster_3_node_5_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_6/cluster_2_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_6/cluster_2_node_6_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m23_QSKSR_ArsR2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m21_ISTSK_ArsR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m45_MSTSR_ArsR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m37_VSTSK_ArsR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m48_MSTSK_ArsR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_4/cluster_2_node_4_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m15_PKAIE_Phr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m10_PKVIE_Phr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m17_PKVLE_Phr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m53_PKAID_Phr_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_5/cluster_4_node_5_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_4/cluster_3_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_4/cluster_3_node_4_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m31_ESASH_SmtB_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m40_QSNSH_CzrA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m12_QTTSH_CzrA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m16_QSSSH_CzrA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m33_QSASH_CzrA_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_6/cluster_3_node_6_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m25_PKAIS_Phr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m15_PKAIE_Phr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m10_PKVIE_Phr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m17_PKVLE_Phr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m53_PKAID_Phr_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_6/cluster_4_node_6_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m36_FSTSK_ArsR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m23_QSKSR_ArsR2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m21_ISTSK_ArsR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m45_MSTSR_ArsR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m37_VSTSK_ArsR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m48_MSTSK_ArsR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_5/cluster_2_node_5_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_4/cluster_4_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_4/cluster_4_node_4_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_4/cluster_2_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_4/cluster_2_node_4_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_5/cluster_4_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_5/cluster_4_node_5_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_6/cluster_3_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_6/cluster_3_node_6_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_6/cluster_4_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_6/cluster_4_node_6_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_5/cluster_2_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_5/cluster_2_node_5_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_4/cluster_3_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100218_DAtoTt


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_5/cluster_4_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100218_78XLtz


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_5/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100218_8i4WIZ


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_5/cluster_2_nb_motifs_6.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100218_CO01h9


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_6/cluster_2_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100218_1z63p0


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_4/cluster_4_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100218_gZvoNC


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_6/cluster_3_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100218_AjUBMU


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_4/cluster_2_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100218_9VtMtA


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_6/cluster_4_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100218_Ppe7Pz


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_4/cluster_3_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_5/cluster_4_node_5_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_4/cluster_4_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_6/cluster_2_node_6_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_6/cluster_3_node_6_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_5/cluster_3_node_5_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_5/cluster_2_node_5_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_4/cluster_2_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_6/cluster_4_node_6_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m3_QPASQ_AseR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m19_QPSSQ_AseR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m1_QPKSR_ArsR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_7/cluster_3_node_7_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_7/cluster_3_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_7/cluster_3_node_7_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m6_QSTSH_CzrA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m31_ESASH_SmtB_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m40_QSNSH_CzrA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m12_QTTSH_CzrA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m16_QSSSH_CzrA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m33_QSASH_CzrA_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_8/cluster_3_node_8_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m52_PKALE_Phr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m25_PKAIS_Phr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m15_PKAIE_Phr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m10_PKVIE_Phr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m17_PKVLE_Phr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m53_PKAID_Phr_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_7/cluster_4_node_7_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m50_QSLSH_CzcR2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m59_QSVSH_CzcR2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m6_QSTSH_CzrA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m31_ESASH_SmtB_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m40_QSNSH_CzrA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m12_QTTSH_CzrA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m16_QSSSH_CzrA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m33_QSASH_CzrA_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_9/cluster_3_node_9_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m36_FSTSK_ArsR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m23_QSKSR_ArsR2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m21_ISTSK_ArsR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m45_MSTSR_ArsR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m37_VSTSK_ArsR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m48_MSTSK_ArsR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m2_KPSSH_SdpR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m39_KPSSQ_SdpR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_7/cluster_2_node_7_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m43_QKALE_Phr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m18_QKAIG_Phr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m55_QKAIE_Phr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m52_PKALE_Phr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m25_PKAIS_Phr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m15_PKAIE_Phr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m10_PKVIE_Phr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m17_PKVLE_Phr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m53_PKAID_Phr_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_8/cluster_4_node_8_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_8/cluster_3_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_8/cluster_3_node_8_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_7/cluster_4_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_7/cluster_4_node_7_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_9/cluster_3_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_9/cluster_3_node_9_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_7/cluster_2_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_7/cluster_2_node_7_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_8/cluster_4_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_8/cluster_4_node_8_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_7/cluster_3_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100219_cQPBcR


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_7/cluster_2_nb_motifs_8.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100219_AJwtdj


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_8/cluster_4_nb_motifs_9.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100219_oLL5sx


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_8/cluster_3_nb_motifs_6.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100219_RScAX4


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_7/cluster_4_nb_motifs_6.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100219_VlASz4


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_9/cluster_3_nb_motifs_8.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100219_9iBu2p


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_7/cluster_2_node_7_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_7/cluster_3_node_7_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_7/cluster_4_node_7_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_8/cluster_4_node_8_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_8/cluster_3_node_8_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_9/cluster_3_node_9_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m34_QPRSR_SahR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m3_QPASQ_AseR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m19_QPSSQ_AseR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m1_QPKSR_ArsR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_10/cluster_3_node_10_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_10/cluster_3_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_10/cluster_3_node_10_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m50_QSLSH_CzcR2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m59_QSVSH_CzcR2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m6_QSTSH_CzrA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m31_ESASH_SmtB_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m40_QSNSH_CzrA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m12_QTTSH_CzrA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m16_QSSSH_CzrA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m33_QSASH_CzrA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m34_QPRSR_SahR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m3_QPASQ_AseR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m19_QPSSQ_AseR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m1_QPKSR_ArsR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_11/cluster_3_node_11_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_11/cluster_3_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_11/cluster_3_node_11_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_10/cluster_3_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100220_0lI74l


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_11/cluster_3_nb_motifs_12.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100220_OBCKwN


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_10/cluster_3_node_10_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_11/cluster_3_node_11_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m44_QQTSF_YdfF_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m51_PQTSF_YdfF_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m13_RTNSN_CadR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m58_RSNSN_CadR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_node_1_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100221_icuHJO


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100221_iiisYD


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m41_KSTSH_YczG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m44_QQTSF_YdfF_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m51_PQTSF_YdfF_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_2/cluster_5_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m22_QPTSY_Caur_3587_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m24_QPTSH_ArsR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_node_1_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_2/cluster_5_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_2/cluster_5_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_2/cluster_5_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100222_BD2MYQ


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100222_XDKNtr


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_2/cluster_5_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m14_ASNSF_ArsR3_2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m9_GTNSF_ArsR3_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_1/cluster_8_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m35_QSTSQ_YbzH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m22_QPTSY_Caur_3587_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m24_QPTSH_ArsR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_2/cluster_7_node_2_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_1/cluster_8_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_8 -name cluster_8 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_1/cluster_8_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_2/cluster_7_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_2/cluster_7_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_2/cluster_7_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100223_SwzaiC


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_1/cluster_8_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100223_ILu5ej


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_1/cluster_8_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_2/cluster_7_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m4_QSASQ_HlyU_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/Collection_1_m7_ASASQ_YgaV_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_1/cluster_9_node_1_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_1/cluster_9_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_1/cluster_9_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_1/cluster_9_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/IC_test_2026-06-18.100224_xWB5xA


cat /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_1/cluster_9_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


rm -r /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_pairwise_compa_logos


cp /var/www/html/rsat/public_html/templates_html/display_d3_tree.html /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_logo_tree.html


cp /var/www/html/rsat/public_html/templates_html/display_small_d3_tree.html /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_portable_logo_tree.html


mv /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_temporary.html /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_logo_tree.html


mv /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_temporary_2.html /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_portable_logo_tree.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/pairwise_compa_matrix_descriptions.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_html/pairwise_compa_matrix_descriptions.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/distance_table.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/distance_table.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/alignment_table.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/alignment_table.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/clusters.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/clusters.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/clusters_motif_names.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/clusters_motif_names.html


mv -f /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_temporary_2.html /var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_portable_logo_tree.html
; matrix-clustering  -v 1 -max_matrices 300 -matrix Collection_1 $RSAT/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_query_matrices.meme meme -hclust_method average -calc sum -title arsr -metric_build_tree Ncor -lth w 5 -lth cor 0.6 -lth Ncor 0.55 -quick -label_in_tree name -return json,heatmap -o $RSAT/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering
; Program version       	1.05
; Number of matrices          	60
; Output files
;	central_motifs_tf           	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_central_motifs_transfac.tf
;	motif_richness_tsv          	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_motif_richness.tsv
;	int_align                   	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/intermediate_alignments.tab
;	heatmap_coverage_d3         	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/convergency_heatmap_tab.tsv
;	matrix_descriptions         	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/pairwise_compa_matrix_descriptions.tab
;	Rlog                        	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_Rlog.txt
;	clusters_table_motif_names_html	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/clusters_motif_names.html
;	ref_collection_tf           	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_reference_collection.tf
;	cluster_summary_table       	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/clusters_summary_table.tab
;	hexa_colors                 	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_hexa_colors.txt
;	heatmap_pdf                 	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_figures/heatmap.pdf
;	motif_richness_barplot_html 	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_motif_richness_barplot.html
;	matrix_descriptions_html    	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_html/pairwise_compa_matrix_descriptions.html
;	log                         	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_log.txt
;	temp_html_3                 	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_temporary_3.html
;	dynamic_heatmap_html        	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_dynamic_heatmap.html
;	temp_html                   	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_temporary.html
;	summary                     	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_SUMMARY.html
;	all_concatenated_motifs     	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
;	temp_html_2                 	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_temporary_2.html
;	input_matrices              	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/input_motifs_processed.tf
;	root_motifs_table           	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_root_motifs_table.tab
;	summary_temp                	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_SUMMARY_TEMP.html
;	prefix                      	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering
;	heatmap_jpg                 	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_figures/heatmap.jpg
;	internal_nodes_attributes_table	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/internal_nodes_attributes.tab
;	central_motifs              	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_central_motifs_IDs.tab
;	coverage_table              	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/clusters_summary_coverage_contingency_table.tab
;	root_motifs                 	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_cluster_root_motifs.tf
;	coverage_json_folder        	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_coverage_json
;	err_log                     	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_errors.txt
;	radial_tree_template        	/var/www/html/rsat/public_html/templates_html/Radial_tree_template.html
;	heatmap_coverage_attributes 	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/convergency_heatmap_attributes.tab
;	archive                     	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_archive.zip
;	pairwise_compa_html         	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_html/pairwise_compa.html
;	small_forest_export         	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_small_forest.html
;	reference_compa             	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/Root_vs_reference_collection_compa.tab
;	motif_file                  	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data/input_motifs_processed.tf
;	pairwise_compa              	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/pairwise_compa.tab
;	clusters_table_html         	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/clusters.html
;	small_logo_cladogram_html   	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_portable_logo_tree.html
;	heatmap_collections_d3      	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/collection_heatmap_tab.tsv
;	consensus_cladogram_json    	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_trees/tree.json
;	heatmap_collections_attributes	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/collection_heatmap_order.tab
;	clusters_table              	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/clusters.tab
;	reference_compa_html        	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_html/Root_vs_reference_collection_compa.html
;	clusters_table_motif_names  	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/clusters_motif_names.tab
;	central_motifs_IDs_temp     	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_central_motifs_IDs_temporal.tab
;	nb_clusters_table           	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/number_of_clusters.tab
;	alignment_table             	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/alignment_table.tab
;	radial_tree                 	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_radial_tree.html
;	cluster_IDs_names           	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_cluster_IDs.txt
;	logo_cladogram_html         	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_logo_tree.html
;	distance_table              	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/distance_table.tab
;	alignment_table_html        	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/alignment_table.html
;	dynamic_coverage_heatmap_html	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_dynamic_coverage_heatmap.html
;	distance_table_html         	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/distance_table.html
;	percent_table               	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_tables/clusters_summary_percent_table.tab
;	html_index                  	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_html/index.html
; Directories
;	output                      	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ
;	data                        	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/matrix-clustering_2026-06-18.100155_pz7tbJ/matrix-clustering_data
; Host name	rsat
; Job started	2026-06-18.100156
; Job done	2026-06-18.100228
; Seconds	1.16
;	user	1.16
;	system	0.52
;	cuser	53.74
;	csystem	13.93