; matrix-scan -v 1 -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/06/18/matrix-scan_2026-06-18.092347_GWkBTw.matrix -pseudo 1 -decimals 1 -2str -origin end -bgfile $RSAT/public_html/data/genomes/Homo_sapiens_GRCh38/oligo-frequencies/2nt_upstream-noorf_Homo_sapiens_GRCh38-ovlp-1str.freq -bg_pseudo 0.01 -return limits -return sites -return pval -return rank -lth score 1 -uth pval 5e-3 -i $RSAT/public_html/tmp/www-data/2026/06/18/tmp_sequence_2026-06-18.092347_1fzTBr.fasta -seq_format fasta -n score ; Slow counting mode ; Input files ; input $RSAT/public_html/tmp/www-data/2026/06/18/tmp_sequence_2026-06-18.092347_1fzTBr.fasta ; bg $RSAT/public_html/data/genomes/Homo_sapiens_GRCh38/oligo-frequencies/2nt_upstream-noorf_Homo_sapiens_GRCh38-ovlp-1str.freq ; Matrix files ; matrix 1 $RSAT/public_html/tmp/www-data/2026/06/18/matrix-scan_2026-06-18.092347_GWkBTw.matrix ; Sequence format fasta ; Pseudo counts 1 ; Background model ; Method file ; Markov order 1 ; Strand sensitive ; Background pseudo-frequency 0.01 ; Residue probabilities ; a 0.28149 ; c 0.21988 ; g 0.22090 ; t 0.27773 ; Thresholds lower upper ; pval NA 0.005 ; score 1 NA ; Output columns ; 1 seq_id ; 2 ft_type ; 3 ft_name ; 4 strand ; 5 start ; 6 end ; 7 sequence ; 8 weight #seq_id ft_type ft_name strand start end sequence weight Pval ln_Pval sig rank rank_pm hg38_dna limit START_END D -1601 -1 . 0 0 0 0 hg38_dna site ZBT43.H12CORE.0.S.C D -629 -620 AGAGCCAAGC 5.3 1.0e-03 -6.895 2.995 1 1 hg38_dna site ZBT43.H12CORE.0.S.C D -1256 -1247 TCTGCCATAA 4.8 1.5e-03 -6.523 2.833 2 2 hg38_dna site ZBT43.H12CORE.0.S.C R -154 -145 CTTGCCCTCG 4.7 1.6e-03 -6.434 2.794 3 3 hg38_dna site ZBT43.H12CORE.0.S.C D -1181 -1172 AATGCCAATC 4.6 1.7e-03 -6.359 2.762 4 4 hg38_dna site ZBT43.H12CORE.0.S.C R -1462 -1453 ACAGCCATTC 4.0 2.7e-03 -5.903 2.564 5 5 hg38_dna site ZBT43.H12CORE.0.S.C R -391 -382 TATGCCTCTC 3.9 2.9e-03 -5.828 2.531 6 6 hg38_dna site ZBT43.H12CORE.0.S.C R -636 -627 TCTGCCAGGT 3.7 3.4e-03 -5.690 2.471 7 7 hg38_dna site ZBT43.H12CORE.0.S.C R -33 -24 TGTGCCTTTT 3.7 3.4e-03 -5.690 2.471 8 8 hg38_dna site ZBT43.H12CORE.0.S.C D -675 -666 AGAGCCCAGG 3.4 4.0e-03 -5.512 2.394 9 9 hg38_dna site ZBT43.H12CORE.0.S.C R -984 -975 TGAGCCTCCT 3.0 4.9e-03 -5.317 2.309 10 10 hg38_dna limit START_END D -1601 -1 . 0 0 0 0 hg38_dna site ZBT43.H12CORE.0.S.C D -1196 -1187 AATGCCATCA 5.6 7.4e-04 -7.213 3.133 1 1 hg38_dna site ZBT43.H12CORE.0.S.C D -629 -620 AGAGCCAAGC 5.3 1.0e-03 -6.895 2.995 2 2 hg38_dna site ZBT43.H12CORE.0.S.C R -1495 -1486 AGAGCCATTC 5.3 1.0e-03 -6.895 2.995 3 3 hg38_dna site ZBT43.H12CORE.0.S.C D -1256 -1247 TCTGCCATAA 4.8 1.5e-03 -6.523 2.833 4 4 hg38_dna site ZBT43.H12CORE.0.S.C R -154 -145 CTTGCCCTCG 4.7 1.6e-03 -6.434 2.794 5 5 hg38_dna site ZBT43.H12CORE.0.S.C D -1181 -1172 AATGCCAATC 4.6 1.7e-03 -6.359 2.762 6 6 hg38_dna site ZBT43.H12CORE.0.S.C R -389 -380 TGTGCCTCTC 4.6 1.7e-03 -6.359 2.762 7 7 hg38_dna site ZBT43.H12CORE.0.S.C R -1462 -1453 ACAGCCATTC 4.0 2.7e-03 -5.903 2.564 8 8 hg38_dna site ZBT43.H12CORE.0.S.C R -391 -382 TATGCCTCTC 3.9 2.9e-03 -5.828 2.531 9 9 hg38_dna site ZBT43.H12CORE.0.S.C R -636 -627 TCTGCCAGGT 3.7 3.4e-03 -5.690 2.471 10 10 hg38_dna site ZBT43.H12CORE.0.S.C R -33 -24 TGTGCCTTTT 3.7 3.4e-03 -5.690 2.471 11 11 hg38_dna site ZBT43.H12CORE.0.S.C R -651 -642 TCTGCCAGGT 3.7 3.4e-03 -5.690 2.471 12 12 hg38_dna site ZBT43.H12CORE.0.S.C R -626 -617 CCTGCCTCAC 3.6 3.6e-03 -5.629 2.445 13 13 hg38_dna site ZBT43.H12CORE.0.S.C R -167 -158 CATGCCAGAT 3.6 3.6e-03 -5.629 2.445 14 14 hg38_dna site ZBT43.H12CORE.0.S.C D -675 -666 AGAGCCCAGG 3.4 4.0e-03 -5.512 2.394 15 15 hg38_dna site ZBT43.H12CORE.0.S.C D -690 -681 AGAGCCCAGG 3.4 4.0e-03 -5.512 2.394 16 16 hg38_dna site ZBT43.H12CORE.0.S.C R -152 -143 GATGCCCTTT 3.3 4.2e-03 -5.468 2.375 17 17 hg38_dna site ZBT43.H12CORE.0.S.C R -984 -975 TGAGCCTCCT 3.0 4.9e-03 -5.317 2.309 18 18 hg38_dna site ZBT43.H12CORE.0.S.C R -1460 -1451 CTTGCCAGCA 3.0 4.9e-03 -5.317 2.309 19 19 hg38_dna site ZBT43.H12CORE.0.S.C D -74 -65 GCTGCCCAGA 3.0 4.9e-03 -5.317 2.309 20 20 hg38_dna limit START_END D -1601 -1 . 0 0 0 0 hg38_dna site ZBT43.H12CORE.0.S.C R -846 -837 TGTGCCATGT 7.6 5.5e-05 -9.806 4.259 1 1 hg38_dna site ZBT43.H12CORE.0.S.C R -1137 -1128 TGTGCCACAT 6.9 1.4e-04 -8.848 3.842 2 2 hg38_dna site ZBT43.H12CORE.0.S.C R -956 -947 CCTGCCATGT 6.3 3.1e-04 -8.067 3.504 3 3 hg38_dna site ZBT43.H12CORE.0.S.C D -1196 -1187 AATGCCATCA 5.6 7.4e-04 -7.213 3.133 4 4 hg38_dna site ZBT43.H12CORE.0.S.C D -629 -620 AGAGCCAAGC 5.3 1.0e-03 -6.895 2.995 5 5 hg38_dna site ZBT43.H12CORE.0.S.C R -1495 -1486 AGAGCCATTC 5.3 1.0e-03 -6.895 2.995 6 6 hg38_dna site ZBT43.H12CORE.0.S.C D -1256 -1247 TCTGCCATAA 4.8 1.5e-03 -6.523 2.833 7 7 hg38_dna site ZBT43.H12CORE.0.S.C R -154 -145 CTTGCCCTCG 4.7 1.6e-03 -6.434 2.794 8 8 hg38_dna site ZBT43.H12CORE.0.S.C D -1181 -1172 AATGCCAATC 4.6 1.7e-03 -6.359 2.762 9 9 hg38_dna site ZBT43.H12CORE.0.S.C R -389 -380 TGTGCCTCTC 4.6 1.7e-03 -6.359 2.762 10 10 hg38_dna site ZBT43.H12CORE.0.S.C R -387 -378 TGTGCCTCTC 4.6 1.7e-03 -6.359 2.762 11 11 hg38_dna site ZBT43.H12CORE.0.S.C R -625 -616 TAAGCCACTT 4.3 2.2e-03 -6.111 2.654 12 12 hg38_dna site ZBT43.H12CORE.0.S.C D -631 -622 AAAGCCAAGT 4.2 2.4e-03 -6.035 2.621 13 13 hg38_dna site ZBT43.H12CORE.0.S.C R -1462 -1453 ACAGCCATTC 4.0 2.7e-03 -5.903 2.564 14 14 hg38_dna site ZBT43.H12CORE.0.S.C R -391 -382 TATGCCTCTC 3.9 2.9e-03 -5.828 2.531 15 15 hg38_dna site ZBT43.H12CORE.0.S.C D -1107 -1098 GCAGCCATAA 3.9 2.9e-03 -5.828 2.531 16 16 hg38_dna site ZBT43.H12CORE.0.S.C D -456 -447 TTAGCCATTG 3.8 3.2e-03 -5.753 2.498 17 17 hg38_dna site ZBT43.H12CORE.0.S.C R -636 -627 TCTGCCAGGT 3.7 3.4e-03 -5.690 2.471 18 18 hg38_dna site ZBT43.H12CORE.0.S.C R -33 -24 TGTGCCTTTT 3.7 3.4e-03 -5.690 2.471 19 19 hg38_dna site ZBT43.H12CORE.0.S.C R -651 -642 TCTGCCAGGT 3.7 3.4e-03 -5.690 2.471 20 20 hg38_dna site ZBT43.H12CORE.0.S.C R -29 -20 TGTGCCTTTT 3.7 3.4e-03 -5.690 2.471 21 21 hg38_dna site ZBT43.H12CORE.0.S.C R -626 -617 CCTGCCTCAC 3.6 3.6e-03 -5.629 2.445 22 22 hg38_dna site ZBT43.H12CORE.0.S.C R -167 -158 CATGCCAGAT 3.6 3.6e-03 -5.629 2.445 23 23 hg38_dna site ZBT43.H12CORE.0.S.C R -613 -604 CCTGCCCCAC 3.5 3.8e-03 -5.562 2.416 24 24 hg38_dna site ZBT43.H12CORE.0.S.C D -156 -147 GATGCCAGAG 3.5 3.8e-03 -5.562 2.416 25 25 hg38_dna site ZBT43.H12CORE.0.S.C D -675 -666 AGAGCCCAGG 3.4 4.0e-03 -5.512 2.394 26 26 hg38_dna site ZBT43.H12CORE.0.S.C D -690 -681 AGAGCCCAGG 3.4 4.0e-03 -5.512 2.394 27 27 hg38_dna site ZBT43.H12CORE.0.S.C R -152 -143 GATGCCCTTT 3.3 4.2e-03 -5.468 2.375 28 28 hg38_dna site ZBT43.H12CORE.0.S.C R -915 -906 CCTGCCCCCC 3.1 4.6e-03 -5.372 2.333 29 29 hg38_dna site ZBT43.H12CORE.0.S.C R -984 -975 TGAGCCTCCT 3.0 4.9e-03 -5.317 2.309 30 30 hg38_dna site ZBT43.H12CORE.0.S.C R -1460 -1451 CTTGCCAGCA 3.0 4.9e-03 -5.317 2.309 31 31 hg38_dna site ZBT43.H12CORE.0.S.C D -74 -65 GCTGCCCAGA 3.0 4.9e-03 -5.317 2.309 32 32 ; ; Matrices ; matrix name ncol nrow pseudo Wmin Wmax Wrange ; 1 ZBT43.H12CORE.0.S.C 10 4 1 -37.800 9.300 47.100 a:0.281 c:0.220 g:0.221 t:0.278 ; Number of sequences scanned 3 ; Sum of sequence lengths 4803 ; N residues 0 ; Matches per matrix ; matrix name matches scored ; 1 ZBT43.H12CORE.0.S.C 32 9552 ; TOTAL 32 9552 ; Host name rsat ; Job started 2026-06-18.092347 ; Job done 2026-06-18.092348 ; Seconds 1.16 ; user 1.16 ; system 0.02 ; cuser 0 ; csystem 0