; pattern-assembly  -v 1 -subst 1 -toppat 50 -2str -max_asmb_nb 20 -i $RSAT/public_html/tmp/www-data/2026/06/18/oligo-analysis_2026-06-18.142551_KhL7ja.tab -o $RSAT/public_html/tmp/www-data/2026/06/18/oligo-analysis_2026-06-18.142551_KhL7ja.asmb
; Input file	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/oligo-analysis_2026-06-18.142551_KhL7ja.tab
; Output file	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/oligo-analysis_2026-06-18.142551_KhL7ja.asmb
; Input score column           	8
; Output score column          	0
; Strand-insensitive assembly
; Max flanking bases           	1
; Max substitutions            	1
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	0
; Top number of patterns       	50
; Number of input patterns     	150
; THE ASSEMBLY WAS RESTRICTED TO THE	50 TOP PATTERNS
;
;Number of patterns = 150.	Exceeds top number = 50.	Only the top 50 patterns will be assembled.

; assembly # 1	seed: ggccca	6 assembled patterns	length 11
;    alignt	    rev_cpl	score
aaggcc.....	.....ggcctt	78.45
.aggccc....	....gggcct.	227.77
..ggccca...	...tgggcc..	350.00
...gcccat..	..atgggc...	261.19
....cccatt.	.aatggg....	98.13
.....ccatta	taatgg.....	24.68
aaggcccatta	taatgggcctt	350.00	best consensus

; assembly # 2	seed: agccca	6 assembled patterns	length 11
;    alignt	    rev_cpl	score
aaagcc.....	.....ggcttt	59.99
.aagccc....	....gggctt.	176.51
..agccca...	...tgggct..	270.47
...gcccat..	..atgggc...	261.19
....cccatt.	.aatggg....	98.13
.....ccatta	taatgg.....	24.68
aaagcccatta	taatgggcttt	270.47	best consensus

; assembly # 3	seed: gcccaa	5 assembled patterns	length 10
;   alignt	   rev_cpl	score
aaggcc....	....ggcctt	78.45
.aggccc...	...gggcct.	227.77
..ggccca..	..tgggcc..	350.00
...gcccaa.	.ttgggc...	238.60
....cccaat	attggg....	93.76
aaggcccaat	attgggcctt	350.00	best consensus

; assembly # 4	seed: cggcga	5 assembled patterns	length 10
;   alignt	   rev_cpl	score
acgacg....	....cgtcgt	44.33
.cgacgg...	...ccgtcg.	49.10
..gacggc..	..gccgtc..	31.41
...acggcg.	.cgccgt...	59.33
....cggcga	tcgccg....	81.33
acgacggcga	tcgccgtcgt	81.33	best consensus

; assembly # 5	seed: ggccta	6 assembled patterns	length 11
;    alignt	    rev_cpl	score
taatgg.....	.....ccatta	24.68
.aatggg....	....cccatt.	98.13
..atgggc...	...gcccat..	261.19
...tgggcc..	..ggccca...	350.00
....gggcct.	.aggccc....	227.77
.....ggccta	taggcc.....	71.21
taatgggccta	taggcccatta	350.00	best consensus

; assembly # 6	seed: ccgccg	8 assembled patterns	length 13
;      alignt	      rev_cpl	score
tcgccg.......	.......cggcga	81.33
.cgccgc......	......gcggcg.	55.46
..gccgcc.....	.....ggcggc..	39.43
...ccgccg....	....cggcgg...	65.04
....cgccgt...	...acggcg....	59.33
.....gccgtc..	..gacggc.....	31.41
......ccgtcg.	.cgacgg......	49.10
.......cgtcgt	acgacg.......	44.33
tcgccgccgtcgt	acgacggcggcga	81.33	best consensus

; assembly # 7	seed: cggaga	8 assembled patterns	length 13
;      alignt	      rev_cpl	score
acgacg.......	.......cgtcgt	44.33
.cgacgg......	......ccgtcg.	49.10
..gacggc.....	.....gccgtc..	31.41
...acggcg....	....cgccgt...	59.33
....cggcgg...	...ccgccg....	65.04
.....ggcgga..	..tccgcc.....	34.49
......gcggag.	.ctccgc......	33.55
.......cggaga	tctccg.......	57.16
acgacggcggaga	tctccgccgtcgt	65.04	best consensus

; assembly # 8	seed: gggcca	5 assembled patterns	length 10
;   alignt	   rev_cpl	score
taatgg....	....ccatta	24.68
.aatggg...	...cccatt.	98.13
..atgggc..	..gcccat..	261.19
...tgggcc.	.ggccca...	350.00
....gggcca	tggccc....	53.67
taatgggcca	tggcccatta	350.00	best consensus

; assembly # 9	seed: ccggcg	2 assembled patterns	length 7
;alignt	rev_cpl	score
ccggcg.	.cgccgg	49.08
.cggcga	tcgccg.	81.33
ccggcga	tcgccgg	81.33	best consensus

; assembly # 10	seed: cgacga	2 assembled patterns	length 7
;alignt	rev_cpl	score
acgacg.	.cgtcgt	44.33
.cgacga	tcgtcg.	47.54
acgacga	tcgtcgt	47.54	best consensus

; assembly # 11	seed: cggccc	5 assembled patterns	length 10
;   alignt	   rev_cpl	score
cggccc....	....gggccg	46.12
.ggccca...	...tgggcc.	350.00
..gcccat..	..atgggc..	261.19
...cccatt.	.aatggg...	98.13
....ccatta	taatgg....	24.68
cggcccatta	taatgggccg	350.00	best consensus

; assembly # 12	seed: cgattc	2 assembled patterns	length 7
;alignt	rev_cpl	score
cgattc.	.gaatcg	44.31
.gattcg	cgaatc.	25.95
cgattcg	cgaatcg	44.31	best consensus

; assembly # 13	seed: ctgggc	4 assembled patterns	length 9
;  alignt	  rev_cpl	score
ctgggc...	...gcccag	41.85
.tgggcc..	..ggccca.	350.00
..gggcct.	.aggccc..	227.77
...ggcctt	aaggcc...	78.45
ctgggcctt	aaggcccag	350.00	best consensus

; assembly # 14	seed: gcccac	4 assembled patterns	length 9
;  alignt	  rev_cpl	score
aaggcc...	...ggcctt	78.45
.aggccc..	..gggcct.	227.77
..ggccca.	.tgggcc..	350.00
...gcccac	gtgggc...	41.33
aaggcccac	gtgggcctt	350.00	best consensus

; assembly # 15	seed: atcgga	3 assembled patterns	length 8
; alignt	 rev_cpl	score
atcgga..	..tccgat	41.19
.tcggag.	.ctccga.	30.80
..cggaga	tctccg..	57.16
atcggaga	tctccgat	57.16	best consensus

; assembly # 16	seed: gagaga	1 assembled patterns	length 6
;alignt	rev_cpl	score
gagaga	tctctc	34.08
gagaga	tctctc	34.08	best consensus

; assembly # 17	seed: cgtcgc	5 assembled patterns	length 10
;   alignt	   rev_cpl	score
tcgccg....	....cggcga	81.33
.cgccgt...	...acggcg.	59.33
..gccgtc..	..gacggc..	31.41
...ccgtcg.	.cgacgg...	49.10
....cgtcgc	gcgacg....	33.79
tcgccgtcgc	gcgacggcga	81.33	best consensus

; assembly # 18	seed: cccata	5 assembled patterns	length 10
;   alignt	   rev_cpl	score
aaggcc....	....ggcctt	78.45
.aggccc...	...gggcct.	227.77
..ggccca..	..tgggcc..	350.00
...gcccat.	.atgggc...	261.19
....cccata	tatggg....	33.67
aaggcccata	tatgggcctt	350.00	best consensus

; assembly # 19	seed: cgaaga	2 assembled patterns	length 7
;alignt	rev_cpl	score
cgaaga.	.tcttcg	32.81
.gaagaa	ttcttc.	25.11
cgaagaa	ttcttcg	32.81	best consensus

; assembly # 20	seed: cctccg	8 assembled patterns	length 13
;      alignt	      rev_cpl	score
cctccg.......	.......cggagg	31.83
.ctccgc......	......gcggag.	33.55
..tccgcc.....	.....ggcgga..	34.49
...ccgccg....	....cggcgg...	65.04
....cgccgt...	...acggcg....	59.33
.....gccgtc..	..gacggc.....	31.41
......ccgtcg.	.cgacgg......	49.10
.......cgtcgt	acgacg.......	44.33
cctccgccgtcgt	acgacggcggagg	65.04	best consensus
; Maximal number of assemblies is reached (20). Remaining patterns: 10.
; Host name	rsat
; Job started	2026-06-18.142557
; Job done	2026-06-18.142602
; Seconds	5.25
;	user	5.25
;	system	0.01
;	cuser	0
;	csystem	0