; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2026/06/18/peak-motifs.2026-06-18.093913_2026-06-18.093913_4mNfBI/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o $RSAT/public_html/tmp/www-data/2026/06/18/peak-motifs.2026-06-18.093913_2026-06-18.093913_4mNfBI/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/peak-motifs.2026-06-18.093913_2026-06-18.093913_4mNfBI/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2026/06/18/peak-motifs.2026-06-18.093913_2026-06-18.093913_4mNfBI/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	2	2	4	0	4	4	4	4	0	2	2
c	0	0	0	0	0	0	0	0	0	1	1
g	0	1	0	0	0	0	0	0	0	0	0
t	2	1	0	4	0	0	0	0	4	1	1
//
; Sites	4
>site_0
TTATAAAATTC
>site_1
AAATAAAATAA
>site_2
TAATAAAATAT
>site_3
AGATAAAATCA
a	1	1	3	0	3	0	0	0	3	1	1
c	0	1	0	3	0	0	0	0	0	2	2
g	1	0	0	0	0	3	0	0	0	0	0
t	1	1	0	0	0	0	3	3	0	0	0
//
; Sites	3
>site_0
AAACAGTTACC
>site_1
GCACAGTTACA
>site_2
TTACAGTTAAC
a	2	1	2	0	0	2	0	0	0	0	2
c	0	0	0	0	0	0	2	2	0	1	0
g	0	1	0	2	2	0	0	0	2	1	0
t	0	0	0	0	0	0	0	0	0	0	0
//
; Sites	2
>site_0
AAAGGACCGCA
>site_1
AGAGGACCGGA
a	0	2	3	3	0	3	0	3	0	1	0
c	1	1	0	0	0	0	0	0	3	1	2
g	1	0	0	0	3	0	3	0	0	1	0
t	1	0	0	0	0	0	0	0	0	0	1
//
; Sites	3
>site_0
TCAAGAGACAC
>site_1
GAAAGAGACCC
>site_2
CAAAGAGACGT
; Host name	rsat
; Job started	2026-06-18.093921
; Job done	2026-06-18.093921
; Seconds	0.13
;	user	0.13
;	system	0.02
;	cuser	0
;	csystem	0
