RSAT - peak-motifs result

Analysis: const_high (18/06/2026 09:49)

peak-motifs  -v 1 -title const_high -i $RSAT/public_html/tmp/www-data/2026/06/18/peak-motifs.2026-06-18.094604_2026-06-18.094604_yRXh1H/peak-motifspeak_seq -markov auto -disco oligos,positions,local_words -nmotifs 5 -minol 6 -maxol 8 -merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_vertebrates_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/06/18/peak-motifs.2026-06-18.094604_2026-06-18.094604_yRXh1H

motif discovery
positions_6-8nt	positions_6-8nt_m1 assembly: tccgccccgcccccg (sig=25.65; e-value=2.2e-26) RC: cgggggcggggcgga positions_6-8nt_m2 assembly: gaccaatcag (sig=9.72; e-value=1.9e-10) RC: ctgattggtc positions_6-8nt_m3 assembly: aacatggcggggcgggggcg (sig=25.65; e-value=2.2e-26) RC: cgcccccgccccgccatgtt positions_6-8nt_m4 assembly: cctgcgcagg (sig=6.34; e-value=4.6e-07) RC: cctgcgcagg positions_6-8nt_m5 assembly: ctgattggct (sig=9.72; e-value=1.9e-10) RC: agccaatcag	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
local_words_6-8nt	Not a single significant pattern	[local_words_6-8nt]
oligos_6-8nt	oligos_6-8nt_m1 assembly: ccccgccccg (sig=156.00; e-value=1e-156) RC: cggggcgggg oligos_6-8nt_m2 assembly: gcgtgcgcacgc (sig=66.21; e-value=6.2e-67) RC: gcgtgcgcacgc oligos_6-8nt_m3 assembly: cagccaatcaga (sig=64.85; e-value=1.4e-65) RC: tctgattggctg oligos_6-8nt_m4 assembly: aaccaatcaga (sig=64.85; e-value=1.4e-65) RC: tctgattggtt oligos_6-8nt_m5 assembly: cgcatgcg (sig=40.83; e-value=1.5e-41) RC: cgcatgcg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]

Motif discovery
Motif 1   positions_6-8nt_m1	k-mer sig=25.65; evalue=2.2e-26 scyccgCCCCgCCCccycc GGRGGGGGCGGGGCGGRGS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor scyccgCCCCgCCCccycc PATZ1 MA1961.2 R 11 0.5789 0.929 0.538 NA NA KLF16 MA0741.1 D 11 0.5789 0.868 0.502 NA NA ZBED4 MA2328.1 D 10 0.5263 0.954 0.502 NA NA Total matches= 25 (22 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 220 (9.07%) Max nb of predicted sites per peak: 11  (mm10_ct_MyTrack_6202_62) Mean nb of predicted sites per peak: 6.41	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   positions_6-8nt_m2	k-mer sig=9.72; evalue=1.9e-10 yyrACCAATcAgar YTCTGATTGGTYRR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor yyrACCAATcAgar NFYA MA0060.4 D 8 0.5714 0.999 0.571 NA NA NFYB MA0502.3 R 9 0.6429 0.800 0.515 NA NA NFYC MA1644.2 D 7 0.5000 0.998 0.499 NA NA Total matches= 8 (5 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 178 (7.34%) Max nb of predicted sites per peak: 4  (mm10_ct_MyTrack_6202_32) Mean nb of predicted sites per peak: 3.57	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   positions_6-8nt_m3	k-mer sig=25.65; evalue=2.2e-26 ggrrcrkGGcGGGGcgGggscggg CCCGSCCCCGCCCCGCCMYGYYCC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ggrrcrkGGcGGGGcgGggscggg PATZ1 MA1961.2 D 11 0.4583 0.909 0.416 NA NA ZBED4 MA2328.1 R 10 0.4167 0.966 0.403 NA NA Total matches= 2		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 191 (7.88%) Max nb of predicted sites per peak: 13  (mm10_ct_MyTrack_6202_81) Mean nb of predicted sites per peak: 5.89	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   positions_6-8nt_m4	k-mer sig=6.34; evalue=4.6e-07 cgccTGCGCAggcg CGCCTGCGCAGGCG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor cgccTGCGCAggcg Nrf1 MA0506.3 R 11 0.7333 0.720 0.528 NA NA ZBTB14 MA1650.2 D 8 0.5714 0.712 0.407 NA NA TCF12 MA1648.2 R 7 0.5000 0.810 0.405 NA NA Total matches= 3		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 136 (5.61%) Max nb of predicted sites per peak: 6  (mm10_ct_MyTrack_6202_108) Mean nb of predicted sites per peak: 3.84	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   positions_6-8nt_m5	k-mer sig=9.72; evalue=1.9e-10 ytcTgATTGGcTrr YYAGCCAATCAGAR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ytcTgATTGGcTrr NFYA MA0060.4 R 8 0.5714 0.998 0.570 NA NA NFYB MA0502.3 D 9 0.6429 0.855 0.549 NA NA NFYC MA1644.2 R 7 0.5000 0.996 0.498 NA NA Total matches= 6 (3 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 187 (7.71%) Max nb of predicted sites per peak: 4  (mm10_ct_MyTrack_6202_30) Mean nb of predicted sites per peak: 3.79	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_6-8nt_m1	k-mer sig=156.00; evalue=1e-156 sgcCCCGCCCcgcc GGCGGGGCGGGGCS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor sgcCCCGCCCcgcc PATZ1 MA1961.2 R 11 0.7857 0.927 0.728 NA NA KLF5 MA0599.1 D 10 0.7143 0.910 0.650 NA NA KLF16 MA0741.1 D 11 0.7857 0.826 0.649 NA NA Total matches= 30 (27 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 210 (8.66%) Max nb of predicted sites per peak: 9  (mm10_ct_MyTrack_6202_71) Mean nb of predicted sites per peak: 5.25	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_6-8nt_m2	k-mer sig=66.21; evalue=6.2e-67 gcgcgTGCGCAcgcgc GCGCGTGCGCACGCGC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor gcgcgTGCGCAcgcgc Nrf1 MA0506.3 D 12 0.7500 0.808 0.606 NA NA EPAS1 MA2325.1 R 9 0.5625 0.726 0.408 NA NA TCFL5 MA0632.3 D 8 0.5000 0.800 0.400 NA NA Total matches= 3		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 161 (6.64%) Max nb of predicted sites per peak: 12  (mm10_ct_MyTrack_6202_165) Mean nb of predicted sites per peak: 5.50	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_6-8nt_m3	k-mer sig=64.85; evalue=1.4e-65 wycAgCCAATcAgara TYTCTGATTGGCTGRW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wycAgCCAATcAgara NFYA MA0060.4 D 8 0.5000 0.998 0.499 NA NA NFYB MA0502.3 R 9 0.5625 0.829 0.467 NA NA Gfi1B MA0483.2 D 10 0.6250 0.702 0.439 NA NA Total matches= 5 (2 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 181 (7.46%) Max nb of predicted sites per peak: 4  (mm10_ct_MyTrack_6202_53) Mean nb of predicted sites per peak: 3.48	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_6-8nt_m4	k-mer sig=64.85; evalue=1.4e-65 hyAACCAATcAgara TYTCTGATTGGTTRD	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor hyAACCAATcAgara NFYA MA0060.4 D 8 0.5333 0.999 0.533 NA NA Gfi1B MA0483.2 D 10 0.6667 0.718 0.479 NA NA GFI1 MA0038.3 D 10 0.6250 0.760 0.475 NA NA Total matches= 7 (4 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 182 (7.51%) Max nb of predicted sites per peak: 4  (mm10_ct_MyTrack_6202_99) Mean nb of predicted sites per peak: 3.49	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_6-8nt_m5	k-mer sig=40.83; evalue=1.5e-41 yrcGCATGCgyr YRCGCATGCGYR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor yrcGCATGCgyr Nrf1 MA0506.3 D 11 0.8462 0.934 0.790 NA NA TCFL5 MA0632.3 D 8 0.6667 0.734 0.490 NA NA HES1 MA1099.3 R 8 0.6667 0.714 0.476 NA NA Total matches= 4 (1 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 182 (7.51%) Max nb of predicted sites per peak: 10  (mm10_ct_MyTrack_6202_46) Mean nb of predicted sites per peak: 6.38	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title const_high -i $RSAT/public_html/tmp/www-data/2026/06/18/peak-motifs.2026-06-18.094604_2026-06-18.094604_yRXh1H/peak-motifspeak_seq -markov auto -disco oligos,positions,local_words -nmotifs 5 -minol 6 -maxol 8 -merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_vertebrates_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/06/18/peak-motifs.2026-06-18.094604_2026-06-18.094604_yRXh1H

Warning: Number of patterns = 300. Exceeds top number = 100. Only the top 100 patterns will be assembled.

Warning: Number of patterns = 111. Exceeds top number = 100. Only the top 100 patterns will be assembled.

Warning: Not a single pattern was found in file tmp/www-data/2026/06/18/peak-motifs.2026-06-18.094604_2026-06-18.094604_yRXh1H/results/local_words_6-8nt/peak-motifs_local_words-2str-noov_6-8nt_windgroup50.tab