RSAT - peak-motifs result

Analysis: const_low (18/06/2026 11:13)

peak-motifs  -v 1 -title const_low -i $RSAT/public_html/tmp/www-data/2026/06/18/peak-motifs.2026-06-18.111052_2026-06-18.111052_pja849/peak-motifspeak_seq -markov auto -disco oligos,positions,local_words -nmotifs 5 -minol 6 -maxol 8 -merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/06/18/peak-motifs.2026-06-18.111052_2026-06-18.111052_pja849

motif discovery
positions_6-8nt	positions_6-8nt_m1 assembly: ggccccgccccctccccccg (sig=300; e-value=1e-300) RC: cggggggagggggcggggcc positions_6-8nt_m2 assembly: agccaatcag (sig=27.23; e-value=5.9e-28) RC: ctgattggct positions_6-8nt_m3 assembly: ggccccgcccccaccccctc (sig=300; e-value=1e-300) RC: gagggggtgggggcggggcc positions_6-8nt_m4 assembly: agggggaggggcggggcct (sig=300; e-value=1e-300) RC: aggccccgcccctccccct positions_6-8nt_m5 assembly: accaatcag (sig=27.23; e-value=5.9e-28) RC: ctgattggt	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
local_words_6-8nt	Not a single significant pattern	[local_words_6-8nt]
oligos_6-8nt	oligos_6-8nt_m1 assembly: gcggagc (sig=48.18; e-value=6.6e-49) RC: gctccgc oligos_6-8nt_m2 assembly: gcggggcg (sig=32.44; e-value=3.6e-33) RC: cgccccgc oligos_6-8nt_m3 assembly: cacgcctcg (sig=26.19; e-value=6.5e-27) RC: cgaggcgtg oligos_6-8nt_m4 assembly: cgagcg (sig=22.34; e-value=4.6e-23) RC: cgctcg oligos_6-8nt_m5 assembly: acctca (sig=18.84; e-value=1.4e-19) RC: tgaggt	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]

Motif discovery
Motif 1   positions_6-8nt_m1	k-mer sig=300; evalue=1e-300 ccssccCCGCCCccyccccccscs SGSGGGGGGRGGGGGCGGGGSSGG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 483 (6.83%) Max nb of predicted sites per peak: 90  (mm10_ct_MyTrack_6202_519) Mean nb of predicted sites per peak: 39.49	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   positions_6-8nt_m2	k-mer sig=27.23; evalue=5.9e-28 hyaGCCAATCAgar YTCTGATTGGCTRD	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 304 (4.30%) Max nb of predicted sites per peak: 5  (mm10_ct_MyTrack_6202_321) Mean nb of predicted sites per peak: 1.80	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   positions_6-8nt_m3	k-mer sig=300; evalue=1e-300 ccssccCCGCCCccscccccbccs SGGVGGGGGSGGGGGCGGGGSSGG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 483 (6.83%) Max nb of predicted sites per peak: 86  (mm10_ct_MyTrack_6202_519) Mean nb of predicted sites per peak: 38.62	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   positions_6-8nt_m4	k-mer sig=300; evalue=1e-300 gsrgggggvgGGGCGGgGssggg CCCSSCCCCGCCCCBCCCCCYSC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 489 (6.92%) Max nb of predicted sites per peak: 69  (mm10_ct_MyTrack_6202_519) Mean nb of predicted sites per peak: 30.70	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   positions_6-8nt_m5	k-mer sig=27.23; evalue=5.9e-28 waACCAATCAgar YTCTGATTGGTTW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 302 (4.27%) Max nb of predicted sites per peak: 5  (mm10_ct_MyTrack_6202_321) Mean nb of predicted sites per peak: 1.77	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_6-8nt_m1	k-mer sig=48.18; evalue=6.6e-49 ssGCGGAGCss SSGCTCCGCSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 436 (6.17%) Max nb of predicted sites per peak: 8  (mm10_ct_MyTrack_6202_60) Mean nb of predicted sites per peak: 4.51	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_6-8nt_m2	k-mer sig=32.44; evalue=3.6e-33 ggGCGGGGCGsg CSCGCCCCGCCC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 456 (6.45%) Max nb of predicted sites per peak: 15  (mm10_ct_MyTrack_6202_387) Mean nb of predicted sites per peak: 7.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_6-8nt_m3	k-mer sig=26.19; evalue=6.5e-27 sscsCGCCTCgss SSCGAGGCGSGSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 453 (6.41%) Max nb of predicted sites per peak: 13  (mm10_ct_MyTrack_6202_519) Mean nb of predicted sites per peak: 7.22	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_6-8nt_m4	k-mer sig=22.34; evalue=4.6e-23 sgCGmGCGcg CGCGCKCGCS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 414 (5.85%) Max nb of predicted sites per peak: 22  (mm10_ct_MyTrack_6202_63) Mean nb of predicted sites per peak: 7.40	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_6-8nt_m5	k-mer sig=18.84; evalue=1.4e-19 tkACcTCAym KRTGAGGTMA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 385 (5.44%) Max nb of predicted sites per peak: 6  (mm10_ct_MyTrack_6202_283) Mean nb of predicted sites per peak: 2.47	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title const_low -i $RSAT/public_html/tmp/www-data/2026/06/18/peak-motifs.2026-06-18.111052_2026-06-18.111052_pja849/peak-motifspeak_seq -markov auto -disco oligos,positions,local_words -nmotifs 5 -minol 6 -maxol 8 -merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/06/18/peak-motifs.2026-06-18.111052_2026-06-18.111052_pja849

Warning: Number of patterns = 221. Exceeds top number = 100. Only the top 100 patterns will be assembled.

Warning: Number of patterns = 259. Exceeds top number = 100. Only the top 100 patterns will be assembled.

Warning: Not a single pattern was found in file tmp/www-data/2026/06/18/peak-motifs.2026-06-18.111052_2026-06-18.111052_pja849/results/local_words_6-8nt/peak-motifs_local_words-2str-noov_6-8nt_windgroup50.tab