peak-motifs STM_TCP4

motif discovery

oligos_6nt_mkv3

oligos_6nt_mkv3_m1	assembly: taggcccatta (sig=78.35; e-value=4.5e-79)	RC: taatgggccta
oligos_6nt_mkv3_m2	assembly: aaagcccatta (sig=63.87; e-value=1.3e-64)	RC: taatgggcttt
oligos_6nt_mkv3_m3	assembly: taaaccctaa (sig=57.67; e-value=2.1e-58)	RC: ttagggttta
oligos_6nt_mkv3_m4	assembly: acggcggcga (sig=31.11; e-value=7.8e-32)	RC: tcgccgccgt
oligos_6nt_mkv3_m5	assembly: ccacgtgg (sig=30.24; e-value=5.8e-31)	RC: ccacgtgg

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

positions_6nt

positions_6nt_m1	assembly: aaaggcccaata (sig=300; e-value=1e-300)	RC: tattgggccttt
positions_6nt_m2	assembly: ataatgggccttt (sig=300; e-value=1e-300)	RC: aaaggcccattat
positions_6nt_m3	assembly: aaagcccattat (sig=300; e-value=1e-300)	RC: ataatgggcttt
positions_6nt_m4	assembly: ataatgggcctat (sig=300; e-value=1e-300)	RC: ataggcccattat
positions_6nt_m5	assembly: aaaggcccatat (sig=300; e-value=1e-300)	RC: atatgggccttt

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

oligos_7nt_mkv4

oligos_7nt_mkv4_m1	assembly: aaaaccctaga (sig=38.84; e-value=1.4e-39)	RC: tctagggtttt
oligos_7nt_mkv4_m2	assembly: ataggcccatta (sig=26.30; e-value=5e-27)	RC: taatgggcctat
oligos_7nt_mkv4_m3	assembly: gcccaata (sig=15.12; e-value=7.6e-16)	RC: tattgggc
oligos_7nt_mkv4_m4	assembly: cttcttc (sig=11.68; e-value=2.1e-12)	RC: gaagaag
oligos_7nt_mkv4_m5	assembly: taaagccca (sig=9.58; e-value=2.6e-10)	RC: tgggcttta

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

positions_7nt

positions_7nt_m1	assembly: taaagcccattaa (sig=300; e-value=1e-300)	RC: ttaatgggcttta
positions_7nt_m2	assembly: ttaggcccaataa (sig=300; e-value=1e-300)	RC: ttattgggcctaa
positions_7nt_m3	assembly: ttaatgggcctaa (sig=300; e-value=1e-300)	RC: ttaggcccattaa
positions_7nt_m4	assembly: taaagcccaataa (sig=300; e-value=1e-300)	RC: ttattgggcttta
positions_7nt_m5	assembly: aaaaggcccaataa (sig=300; e-value=1e-300)	RC: ttattgggcctttt

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

Motif discovery

Motif 1 oligos_6nt_mkv3_m1

k-mer sig=78.35; evalue=4.5e-79

wwtaGGCCCAttaad

HTTAATGGGCCTAWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (1.50%)
Max nb of predicted sites per peak: 284
(1)
Mean nb of predicted sites per peak: 105.30

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv3_m2

k-mer sig=63.87; evalue=1.3e-64

wwaarGCCCAttaar

YTTAATGGGCYTTWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (1.50%)
Max nb of predicted sites per peak: 272
(1)
Mean nb of predicted sites per peak: 101.00

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv3_m3

k-mer sig=57.67; evalue=2.1e-58

cmtaAACCCTAamy

RKTTAGGGTTTAKG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (1.50%)
Max nb of predicted sites per peak: 94
(1)
Mean nb of predicted sites per peak: 37.60

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv3_m4

k-mer sig=31.11; evalue=7.8e-32

craCGGCGGCGayg

CRTCGCCGCCGTYG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (1.50%)
Max nb of predicted sites per peak: 192
(1)
Mean nb of predicted sites per peak: 63.90

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv3_m5

k-mer sig=30.24; evalue=5.8e-31

ggcCACGTGgcc

GGCCACGTGGCC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (1.50%)
Max nb of predicted sites per peak: 88
(1)
Mean nb of predicted sites per peak: 36.30

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 positions_6nt_m1

k-mer sig=300; evalue=1e-300

twwaaGGCCCAatwaa

TTWATTGGGCCTTWWA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (1.50%)
Max nb of predicted sites per peak: 302
(1)
Mean nb of predicted sites per peak: 110.60

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 positions_6nt_m2

k-mer sig=300; evalue=1e-300

whwwaaTGGGCCtwwww

WWWWAGGCCCATTWWDW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (1.50%)
Max nb of predicted sites per peak: 289
(1)
Mean nb of predicted sites per peak: 108.10

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 positions_6nt_m3

k-mer sig=300; evalue=1e-300

whaarGCCCAttwarr

YYTWAATGGGCYTTDW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (1.50%)
Max nb of predicted sites per peak: 293
(1)
Mean nb of predicted sites per peak: 107.80

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 positions_6nt_m4

k-mer sig=300; evalue=1e-300

hwwwaaTGGGCCtwwww

WWWWAGGCCCATTWWWD

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (1.50%)
Max nb of predicted sites per peak: 283
(1)
Mean nb of predicted sites per peak: 106.60

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 positions_6nt_m5

k-mer sig=300; evalue=1e-300

wwwwaGGCCCAtwwad

HTWWATGGGCCTWWWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (1.50%)
Max nb of predicted sites per peak: 275
(1)
Mean nb of predicted sites per peak: 105.50

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_mkv4_m1

k-mer sig=38.84; evalue=1.4e-39

cmaaAACCCTArmyy

RRKYTAGGGTTTTKG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (1.50%)
Max nb of predicted sites per peak: 96
(1)
Mean nb of predicted sites per peak: 35.60

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_mkv4_m2

k-mer sig=26.30; evalue=5e-27

wwwtaGGCCCAttaar

YTTAATGGGCCTAWWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (1.50%)
Max nb of predicted sites per peak: 267
(1)
Mean nb of predicted sites per peak: 97.50

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_mkv4_m3

k-mer sig=15.12; evalue=7.6e-16

arGCCCAatarr

YYTATTGGGCYT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (1.50%)
Max nb of predicted sites per peak: 240
(1)
Mean nb of predicted sites per peak: 82.40

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_mkv4_m4

k-mer sig=11.68; evalue=2.1e-12

ytCtTCtTCty

RAGAAGAAGAR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (1.50%)
Max nb of predicted sites per peak: 165
(1)
Mean nb of predicted sites per peak: 54.10

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_7nt_mkv4_m5

k-mer sig=9.58; evalue=2.6e-10

yhmaAaGCCCAww

WWTGGGCTTTKDR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (1.50%)
Max nb of predicted sites per peak: 236
(1)
Mean nb of predicted sites per peak: 83.80

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 positions_7nt_m1

k-mer sig=300; evalue=1e-300

twwaArGCCCAttwarr

YYTWAATGGGCYTTWWA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (1.50%)
Max nb of predicted sites per peak: 291
(1)
Mean nb of predicted sites per peak: 106.50

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 positions_7nt_m2

k-mer sig=300; evalue=1e-300

wwwwaGGCCCAwtaarw

WYTTAWTGGGCCTWWWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (1.50%)
Max nb of predicted sites per peak: 313
(1)
Mean nb of predicted sites per peak: 114.60

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 positions_7nt_m3

k-mer sig=300; evalue=1e-300

whttaaTGGGCCtwwww

WWWWAGGCCCATTAADW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (1.50%)
Max nb of predicted sites per peak: 298
(1)
Mean nb of predicted sites per peak: 112.70

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 positions_7nt_m4

k-mer sig=300; evalue=1e-300

twwaarGCCCAataara

TYTTATTGGGCYTTWWA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (1.50%)
Max nb of predicted sites per peak: 282
(1)
Mean nb of predicted sites per peak: 102.70

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 20 positions_7nt_m5

k-mer sig=300; evalue=1e-300

cwwwaaGGCCCAwtaaaa

TTTTAWTGGGCCTTWWWG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (1.50%)
Max nb of predicted sites per peak: 299
(1)
Mean nb of predicted sites per peak: 113.30

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: STM_TCP4_1kb (18/06/2026 17:40)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results