; dna-pattern -v 1 -pl $RSAT/public_html/tmp/www-data/2026/06/21/dna-pattern_2026-06-21.120424_kgf25g.pat -i $RSAT/public_html/tmp/www-data/2026/06/21/tmp_sequence_2026-06-21.120424_httzte.fasta -format fasta -return sites -origin -0 -N 4 -return limits -noov -2str -subst 0
; Citation: van Helden et al. (2000). Yeast 16(2), 177-187.
; Input file $RSAT/public_html/tmp/www-data/2026/06/21/tmp_sequence_2026-06-21.120424_httzte.fasta
; Input format fasta
; Pattern file $RSAT/public_html/tmp/www-data/2026/06/21/dna-pattern_2026-06-21.120424_kgf25g.pat
; Search method regexp
; Threshold 0
; Allowed substitutions 0
; Return fields
; sites
; limits
; Patterns
; seq id score
; CAACGG CAACGG 1
;
; Matching positions
; PatID Strand Pattern SeqID Start End matching_seq Score
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.01G117900.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.01G206400.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.01G206500.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.02G075600.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.02G182200.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.03G002700.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.03G002900.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.03G003000.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.03G003100.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.03G003300.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.03G054900.1 -2000 -1 - 0.00
CAACGG R CAACGG glyma.Wm82.gnm6.ann1.Glyma.03G054900.1 -1730 -1725 acgaCAACGGcgtc 1.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.03G079500.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.03G090200.1 -2000 -1 - 0.00
CAACGG D CAACGG glyma.Wm82.gnm6.ann1.Glyma.03G090200.1 -1055 -1050 aaatCAACGGttaa 1.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.03G090500.1 -2000 -1 - 0.00
CAACGG D CAACGG glyma.Wm82.gnm6.ann1.Glyma.03G090500.1 -1064 -1059 aaatCAACGGttaa 1.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.03G138400.3 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.04G042400.1 -2000 -1 - 0.00
CAACGG R CAACGG glyma.Wm82.gnm6.ann1.Glyma.04G042400.1 -1261 -1256 cattCAACGGactc 1.00
CAACGG R CAACGG glyma.Wm82.gnm6.ann1.Glyma.04G042400.1 -766 -761 aattCAACGGtgat 1.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.04G042500.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.04G066700.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.04G139100.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.06G043200.1 -2000 -1 - 0.00
CAACGG D CAACGG glyma.Wm82.gnm6.ann1.Glyma.06G043200.1 -196 -191 tagtCAACGGatag 1.00
CAACGG D CAACGG glyma.Wm82.gnm6.ann1.Glyma.06G043200.1 -39 -34 cctaCAACGGtgta 1.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.06G068100.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.06G110700.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.06G255900.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.06G256400.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.06G256600.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.06G256700.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.06G257000.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.06G257500.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.06G258020.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.06G258080.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.06G258122.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.06G258142.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.06G258182.1 -2000 -1 - 0.00
CAACGG D CAACGG glyma.Wm82.gnm6.ann1.Glyma.06G258182.1 -1979 -1974 gaatCAACGGgact 1.00
CAACGG D CAACGG glyma.Wm82.gnm6.ann1.Glyma.06G258182.1 -847 -842 taccCAACGGgtgc 1.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.06G258200.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.06G258400.1 -2000 -1 - 0.00
CAACGG D CAACGG glyma.Wm82.gnm6.ann1.Glyma.06G258400.1 -1964 -1959 gtacCAACGGaaca 1.00
CAACGG R CAACGG glyma.Wm82.gnm6.ann1.Glyma.06G258400.1 -1002 -997 aatgCAACGGtgtg 1.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.06G258500.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.06G258900.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.06G260900.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.06G261000.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.06G261100.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.06G261200.3 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.06G261800.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.06G261900.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.06G262000.1 -2000 -1 - 0.00
CAACGG R CAACGG glyma.Wm82.gnm6.ann1.Glyma.06G262000.1 -1777 -1772 ctacCAACGGtcgc 1.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.06G262100.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.06G262300.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.06G262400.1 -2000 -1 - 0.00
CAACGG R CAACGG glyma.Wm82.gnm6.ann1.Glyma.06G262400.1 -996 -991 atttCAACGGttat 1.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.06G262700.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.06G300600.1 -2000 -1 - 0.00
CAACGG D CAACGG glyma.Wm82.gnm6.ann1.Glyma.06G300600.1 -1377 -1372 acaaCAACGGtcac 1.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.07G069000.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.07G080700.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.07G108200.3 -2000 -1 - 0.00
CAACGG D CAACGG glyma.Wm82.gnm6.ann1.Glyma.07G108200.3 -1879 -1874 ttttCAACGGataa 1.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.07G108400.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.07G188800.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.08G060500.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.08G060800.1 -2000 -1 - 0.00
CAACGG R CAACGG glyma.Wm82.gnm6.ann1.Glyma.08G060800.1 -482 -477 acccCAACGGccgg 1.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.08G061000.1 -2000 -1 - 0.00
CAACGG D CAACGG glyma.Wm82.gnm6.ann1.Glyma.08G061000.1 -1466 -1461 tgatCAACGGgcac 1.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.08G125800.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.08G167501.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.08G176200.1 -2000 -1 - 0.00
CAACGG D CAACGG glyma.Wm82.gnm6.ann1.Glyma.08G176200.1 -724 -719 gggtCAACGGtttc 1.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.08G236900.1 -2000 -1 - 0.00
CAACGG D CAACGG glyma.Wm82.gnm6.ann1.Glyma.08G236900.1 -1938 -1933 aagaCAACGGtttt 1.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.08G307300.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.08G307400.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.08G352100.1 -2000 -1 - 0.00
CAACGG R CAACGG glyma.Wm82.gnm6.ann1.Glyma.08G352100.1 -115 -110 aagtCAACGGtcta 1.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.08G352200.1 -2000 -1 - 0.00
CAACGG R CAACGG glyma.Wm82.gnm6.ann1.Glyma.08G352200.1 -279 -274 aggtCAACGGcaaa 1.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.08G352300.1 -2000 -1 - 0.00
CAACGG R CAACGG glyma.Wm82.gnm6.ann1.Glyma.08G352300.1 -31 -26 aagtCAACGGttta 1.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.08G354900.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.08G355000.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.08G355100.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.08G355200.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.09G003100.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.09G099100.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.09G099200.1 -2000 -1 - 0.00
CAACGG D CAACGG glyma.Wm82.gnm6.ann1.Glyma.09G099200.1 -209 -204 ttttCAACGGaaga 1.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.10G100600.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.10G228900.1 -2000 -1 - 0.00
CAACGG R CAACGG glyma.Wm82.gnm6.ann1.Glyma.10G228900.1 -1414 -1409 caatCAACGGaaca 1.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.11G036700.1 -2000 -1 - 0.00
CAACGG D CAACGG glyma.Wm82.gnm6.ann1.Glyma.11G036700.1 -250 -245 aattCAACGGcatt 1.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.11G152200.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.11G219800.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.12G103700.1 -2000 -1 - 0.00
CAACGG R CAACGG glyma.Wm82.gnm6.ann1.Glyma.12G103700.1 -1937 -1932 gcacCAACGGtgac 1.00
CAACGG R CAACGG glyma.Wm82.gnm6.ann1.Glyma.12G103700.1 -1649 -1644 aaagCAACGGatca 1.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.12G104100.1 -2000 -1 - 0.00
CAACGG R CAACGG glyma.Wm82.gnm6.ann1.Glyma.12G104100.1 -901 -896 tgcaCAACGGaaag 1.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.12G140200.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.12G140300.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.12G140400.3 -2000 -1 - 0.00
CAACGG D CAACGG glyma.Wm82.gnm6.ann1.Glyma.12G140400.3 -1466 -1461 caatCAACGGttcc 1.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.12G142100.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.12G142200.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.12G142300.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.12G142400.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.12G143000.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.12G143900.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.12G144100.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.12G144400.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.12G144500.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.12G144800.2 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.12G145300.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.12G145400.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.12G198000.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.12G198100.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.12G198250.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.12G198600.1 -2000 -1 - 0.00
CAACGG D CAACGG glyma.Wm82.gnm6.ann1.Glyma.12G198600.1 -647 -642 tagaCAACGGgaaa 1.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.12G198800.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.12G240300.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.13G166900.3 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.13G248300.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.13G248400.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.13G248500.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.13G248700.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.13G248800.1 -2000 -1 - 0.00
CAACGG R CAACGG glyma.Wm82.gnm6.ann1.Glyma.13G248800.1 -1580 -1575 ttttCAACGGacat 1.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.13G248900.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.13G249000.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.13G249200.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.13G249300.2 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.13G283100.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.13G283200.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.13G283400.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.13G284100.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.13G303400.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.13G303800.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.13G365400.1 -2000 -1 - 0.00
CAACGG D CAACGG glyma.Wm82.gnm6.ann1.Glyma.13G365400.1 -580 -575 tagtCAACGGgtca 1.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.14G116500.1 -2000 -1 - 0.00
CAACGG D CAACGG glyma.Wm82.gnm6.ann1.Glyma.14G116500.1 -508 -503 gcttCAACGGttgc 1.00
CAACGG R CAACGG glyma.Wm82.gnm6.ann1.Glyma.14G116500.1 -140 -135 aaagCAACGGaata 1.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.15G007802.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.15G064900.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.15G065100.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.15G065200.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.15G213600.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.15G213700.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.15G214400.8 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.15G221800.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.15G250200.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.15G258400.2 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.16G034900.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.16G093900.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.16G157400.1 -2000 -1 - 0.00
CAACGG R CAACGG glyma.Wm82.gnm6.ann1.Glyma.16G157400.1 -270 -265 tcaaCAACGGggaa 1.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.17G211200.1 -2000 -1 - 0.00
CAACGG R CAACGG glyma.Wm82.gnm6.ann1.Glyma.17G211200.1 -224 -219 aaagCAACGGaata 1.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.18G037600.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.20G164200.1 -2000 -1 - 0.00
CAACGG R CAACGG glyma.Wm82.gnm6.ann1.Glyma.20G164200.1 -114 -109 ataaCAACGGgaga 1.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.20G173600.1 -2000 -1 - 0.00
START_END DR - glyma.Wm82.gnm6.ann1.Glyma.20G246600.1 -2000 -1 - 0.00
; Host name rsat
; Job started 2026-06-21.120424
; Job done 2026-06-21.120424
; Seconds 0.13
; user 0.13
; system 0.01
; cuser 0
; csystem 0