; matrix-scan  -v 1 -matrix_format tab -m $RSAT/public_html/tmp/www-data/2026/06/28/matrix-scan_2026-06-28.035221_cczMt8.matrix -pseudo 1 -decimals 1 -2str -origin end -bginput -markov 1 -bg_pseudo 0.01 -return limits -return sites -return pval -return rank -lth score 1 -uth pval 1e-4 -i $RSAT/public_html/tmp/www-data/2026/06/28/tmp_sequence_2026-06-28.035221_gVkzLd.fasta -seq_format fasta -n score
; Slow counting mode            
; Input files
;	input	$RSAT/public_html/tmp/www-data/2026/06/28/tmp_sequence_2026-06-28.035221_gVkzLd.fasta
; Matrix files
;	matrix 1	$RSAT/public_html/tmp/www-data/2026/06/28/matrix-scan_2026-06-28.035221_cczMt8.matrix
; Sequence format      	fasta
; Pseudo counts        	1
; Background model
;	Method        	input
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.28947
;		c	0.28131
;		g	0.18909
;		t	0.24013
; Thresholds	lower	upper
;	pval  	NA	0.0001
;	score 	1    	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight	Pval	ln_Pval	sig	rank	rank_pm
OsERF67_promoter_FR13A	limit	START_END	D	-1289	-1	.	0	0	0	0
OsERF67_promoter_FR13A	site	matrix-scan_2026-06-28	R	-1090	-1079	GACCATGGTTTT	7.1	6.8e-06	-11.892	5.165	1	1
OsERF67_promoter_FR13A	site	matrix-scan_2026-06-28	R	-161	-150	GCGGCTGGTTTA	6.0	7.4e-05	-9.517	4.133	2	2
OsERF67_promoter_FR13A	site	matrix-scan_2026-06-28	R	-1123	-1112	GCCTCTGTTTTC	5.9	8.8e-05	-9.343	4.058	3	3
OsERF67_promoter_FR13A	site	matrix-scan_2026-06-28	D	-1070	-1059	TCCTCTGGCTTT	5.9	8.8e-05	-9.343	4.058	4	4
;
; Matrices
;	matrix	name                  	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	matrix-scan_2026-06-28	12	4	1	-7.300	9.200	16.500	a:0.289 c:0.281 g:0.189 t:0.240 
; Number of sequences scanned	1
; Sum of sequence lengths	1289
; N residues           	0
; Matches per matrix
;	matrix	name                  	matches	scored
;	1	matrix-scan_2026-06-28	4	2556
;		TOTAL          	4	2556
; Host name	rsat
; Job started	2026-06-28.035221
; Job done	2026-06-28.035222
; Seconds	0.61
;	user	0.61
;	system	0.02
;	cuser	0.11
;	csystem	0.02