; pattern-assembly  -v 1 -subst 1 -toppat 50 -2str -max_asmb_nb 20 -i $RSAT/public_html/tmp/www-data/2026/07/01/oligo-analysis_2026-07-01.093605_ZJHi28.tab -o $RSAT/public_html/tmp/www-data/2026/07/01/oligo-analysis_2026-07-01.093605_ZJHi28.asmb
; Input file	/var/www/html/rsat/public_html/tmp/www-data/2026/07/01/oligo-analysis_2026-07-01.093605_ZJHi28.tab
; Output file	/var/www/html/rsat/public_html/tmp/www-data/2026/07/01/oligo-analysis_2026-07-01.093605_ZJHi28.asmb
; Input score column           	8
; Output score column          	0
; Strand-insensitive assembly
; Max flanking bases           	1
; Max substitutions            	1
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	0
; Top number of patterns       	50
; Number of input patterns     	6
;

; assembly # 1	seed: atgggc	4 assembled patterns	length 8
; alignt	 rev_cpl	score
aatgggc.	.gcccatt	0.24
.atgggc.	.gcccat.	2.77
.atgggcc	ggcccat.	2.28
..tgggcc	ggccca..	0.97
aatgggcc	ggcccatt	2.77	best consensus

; assembly # 2	seed: aaaact	1 assembled patterns	length 6
;alignt	rev_cpl	score
aaaact	agtttt	1.03
aaaact	agtttt	1.03	best consensus

; assembly # 3	seed: atcttatg	1 assembled patterns	length 8
; alignt	 rev_cpl	score
atcttatg	cataagat	0.10
atcttatg	cataagat	0.10	best consensus
; Host name	rsat
; Job started	2026-07-01.093610
; Job done	2026-07-01.093610
; Seconds	0.14
;	user	0.14
;	system	0.01
;	cuser	0
;	csystem	0