rsync -ruptl /var/www/html/rsat/perl-scripts/lib/js /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw


rsync -ruptl /var/www/html/rsat/public_html/images/program_icons/matrix-clustering_icons /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_query_matrices.meme -from meme -to tf -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/Collection_1_input_motifs_processed_1.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/Collection_1_input_motifs_processed_1.tf -from tf -to transfac -prefix_id Collection_1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/Collection_1_input_motifs_processed.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/Collection_1_input_motifs_processed.tf  > /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/input_motifs_processed.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/input_motifs_processed.tf -split -from tf -to tf -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/motif


 cat /var/www/html/rsat/R-scripts/matrix-clustering.R | /usr/bin/R --slave --no-save --no-restore --no-environ --args " infile = '/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/pairwise_compa.tab'; hclust.method = 'average'; description.file = '/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/pairwise_compa_matrix_descriptions.tab'; distance.table = '/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/distance_table.tab'; alignment.file = '/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/alignment_table.tab'; verbosity = 0; metric = 'Ncor'; heatmap.color.palette = 'YlOrRd'; heatmap.color.classes = '9'; export.newick = 0; radial.only = 0; draw.heatmap = 1; draw.consensus = 0; pos.hclust.in.heatmap = 'column'; lthsp = 'cor_0.4_Ncor_0.4_'; out.prefix = '/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering'; "


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/cluster_1_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/cluster_1_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/cluster_2_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/cluster_2_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/cluster_3_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/cluster_3_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/cluster_4_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/cluster_4_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/cluster_5_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/cluster_5_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/cluster_6_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/cluster_6_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/cluster_7_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/cluster_7_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/cluster_8_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/cluster_8_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/cluster_9_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/cluster_9_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/cluster_10_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/cluster_10_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/cluster_11_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/cluster_11_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/cluster_12_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/cluster_12_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/cluster_13_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/cluster_13_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/cluster_14_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/cluster_14_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/cluster_15_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/cluster_15_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/cluster_16_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/cluster_16_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/cluster_17_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/cluster_17_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/cluster_18_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/cluster_18_transfac_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m43_VKSTSTRR_FucR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_11/cluster_11_matrices_temp.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m22_IQSEATRR_RhaR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m35_VQSEATRR_RhaR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m27_LDSESTRR_FruR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m38_LESESTRR_FruR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m2_LKSEMTRR_DeoR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m4_TESPQTRR_GlpR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_1/cluster_10_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m13_VGSEATRR_RhaR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m44_VPSEATRR_RhaR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_cat.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_11/cluster_11_matrices_temp.tf -from tf -to tf  -attr name cluster_11 -attr accession cluster_11 -set_attr merged_AC 'Collection_1:::VKSTSTRR_FucR' -set_attr merged_ID 'VKSTSTRR_FucR' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_11/cluster_11_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_1/cluster_10_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_1/cluster_10_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/IC_test_2026-07-02.140133_RyqLww


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_11/cluster_11_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/IC_test_2026-07-02.140133_yHWgS5


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_1/cluster_10_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/IC_test_2026-07-02.140133_16nVIF


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/IC_test_2026-07-02.140133_3kF5Ni


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_1/cluster_10_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m17_AKTTMGRQ_AzrR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_12/cluster_12_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_12/cluster_12_matrices_temp.tf -from tf -to tf  -attr name cluster_12 -attr accession cluster_12 -set_attr merged_AC 'Collection_1:::AKTTMGRQ_AzrR' -set_attr merged_ID 'AKTTMGRQ_AzrR' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_12/cluster_12_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m22_IQSEATRR_RhaR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m35_VQSEATRR_RhaR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m13_VGSEATRR_RhaR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m44_VPSEATRR_RhaR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m23_IESISTRR_FruR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m27_LDSESTRR_FruR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m38_LESESTRR_FruR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_6/cluster_1_node_6_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m47_VASEATRR_RhaR_2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m22_IQSEATRR_RhaR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m35_VQSEATRR_RhaR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m13_VGSEATRR_RhaR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m44_VPSEATRR_RhaR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_5/cluster_1_node_5_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_6/cluster_1_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_6/cluster_1_node_6_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_5/cluster_1_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_5/cluster_1_node_5_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/IC_test_2026-07-02.140134_QncXkl


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_6/cluster_1_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/IC_test_2026-07-02.140134_osulpT


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_12/cluster_12_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_5/cluster_1_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/IC_test_2026-07-02.140134_MlpqFb


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_6/cluster_1_node_6_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_5/cluster_1_node_5_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m48_AQSTRTYR_SO1758_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_13/cluster_13_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m15_VETGTTRK_SrlR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_14/cluster_14_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_13/cluster_13_matrices_temp.tf -from tf -to tf  -attr name cluster_13 -attr accession cluster_13 -set_attr merged_AC 'Collection_1:::AQSTRTYR_SO1758' -set_attr merged_ID 'AQSTRTYR_SO1758' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_13/cluster_13_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m40_SKSESTRR_FruR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m46_LQSESTRR_FruR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_7/cluster_1_node_7_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m7_IQSESTRR_FruR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m9_LQSASTRR_FruR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_8/cluster_1_node_8_cat.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_14/cluster_14_matrices_temp.tf -from tf -to tf  -attr name cluster_14 -attr accession cluster_14 -set_attr merged_AC 'Collection_1:::VETGTTRK_SrlR' -set_attr merged_ID 'VETGTTRK_SrlR' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_14/cluster_14_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m23_IESISTRR_FruR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m27_LDSESTRR_FruR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m38_LESESTRR_FruR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m40_SKSESTRR_FruR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m46_LQSESTRR_FruR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_9/cluster_1_node_9_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_8/cluster_1_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_8/cluster_1_node_8_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_7/cluster_1_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_7/cluster_1_node_7_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_9/cluster_1_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_9/cluster_1_node_9_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_13/cluster_13_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_14/cluster_14_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_8/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/IC_test_2026-07-02.140135_uqhHk8


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_9/cluster_1_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/IC_test_2026-07-02.140135_j6mQwD


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_7/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/IC_test_2026-07-02.140135_tho4nk


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_8/cluster_1_node_8_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_9/cluster_1_node_9_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_7/cluster_1_node_7_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m33_VKSTTARD_SufR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_15/cluster_15_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m37_VNSKVTRK_PflR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_16/cluster_16_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_15/cluster_15_matrices_temp.tf -from tf -to tf  -attr name cluster_15 -attr accession cluster_15 -set_attr merged_AC 'Collection_1:::VKSTTARD_SufR' -set_attr merged_ID 'VKSTTARD_SufR' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_15/cluster_15_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_16/cluster_16_matrices_temp.tf -from tf -to tf  -attr name cluster_16 -attr accession cluster_16 -set_attr merged_AC 'Collection_1:::VNSKVTRK_PflR' -set_attr merged_ID 'VNSKVTRK_PflR' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_16/cluster_16_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m5_VESPATRR_UlaR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m7_IQSESTRR_FruR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m9_LQSASTRR_FruR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_10/cluster_1_node_10_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m23_IESISTRR_FruR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m27_LDSESTRR_FruR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m38_LESESTRR_FruR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m40_SKSESTRR_FruR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m46_LQSESTRR_FruR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m5_VESPATRR_UlaR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m7_IQSESTRR_FruR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m9_LQSASTRR_FruR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_11/cluster_1_node_11_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_10/cluster_1_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_10/cluster_1_node_10_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_11/cluster_1_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_11/cluster_1_node_11_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m47_VASEATRR_RhaR_2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m22_IQSEATRR_RhaR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m35_VQSEATRR_RhaR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m13_VGSEATRR_RhaR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m44_VPSEATRR_RhaR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m23_IESISTRR_FruR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m27_LDSESTRR_FruR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m38_LESESTRR_FruR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m40_SKSESTRR_FruR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m46_LQSESTRR_FruR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m5_VESPATRR_UlaR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m7_IQSESTRR_FruR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m9_LQSASTRR_FruR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_12/cluster_1_node_12_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_12/cluster_1_node_12_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_12/cluster_1_node_12_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_16/cluster_16_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_15/cluster_15_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_10/cluster_1_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/IC_test_2026-07-02.140136_nPZo1b


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_12/cluster_1_nb_motifs_13.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/IC_test_2026-07-02.140136_7JjiBm


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_11/cluster_1_nb_motifs_8.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/IC_test_2026-07-02.140136_WRzop4


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_10/cluster_1_node_10_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_12/cluster_1_node_12_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_11/cluster_1_node_11_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m1_IDSTQTRR_CsqR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_17/cluster_17_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m20_QPSTRK_MntR_2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_18/cluster_18_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_18/cluster_18_matrices_temp.tf -from tf -to tf  -attr name cluster_18 -attr accession cluster_18 -set_attr merged_AC 'Collection_1:::QPSTRK_MntR_2' -set_attr merged_ID 'QPSTRK_MntR_2' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_18/cluster_18_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_17/cluster_17_matrices_temp.tf -from tf -to tf  -attr name cluster_17 -attr accession cluster_17 -set_attr merged_AC 'Collection_1:::IDSTQTRR_CsqR' -set_attr merged_ID 'IDSTQTRR_CsqR' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_17/cluster_17_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_17/cluster_17_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_18/cluster_18_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m16_VESEVTRK_GlmR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m29_VDSEVTRK_GlmR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m36_VASTVTRN_AgaR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m16_VESEVTRK_GlmR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m29_VDSEVTRK_GlmR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m31_VKSEVTRS_RhaR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m42_VKSEVTRN_RhaR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m28_VESSVTRS_AgaR2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m51_VESSVTRN_AgaR2_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m14_VASEVTRS_AgaR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m31_VKSEVTRS_RhaR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m42_VKSEVTRN_RhaR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m21_VNSKVTRK_PflR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m36_VASTVTRN_AgaR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m16_VESEVTRK_GlmR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m29_VDSEVTRK_GlmR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m6_VNSTVTRN_AgaR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m14_VASEVTRS_AgaR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m31_VKSEVTRS_RhaR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m42_VKSEVTRN_RhaR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_node_3_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/IC_test_2026-07-02.140138_qfiHHF


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/IC_test_2026-07-02.140138_avCoHH


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/IC_test_2026-07-02.140138_mFT2Jo


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/IC_test_2026-07-02.140138_byyeTz


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/IC_test_2026-07-02.140138_OJm6ia


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/IC_test_2026-07-02.140138_tGHPbL


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/IC_test_2026-07-02.140138_OiqY8E


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m49_VKSDMTRR_LacR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m50_VNSDMTRR_LacR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m25_AQTPQARR_SufR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m32_ALSPQARR_SufR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m30_TESRETRR_FucR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m3_TESKETRR_FucR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m39_AQSPQARR_SufR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m25_AQTPQARR_SufR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m32_ALSPQARR_SufR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_2/cluster_5_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m24_TNSDMTRR_LacR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m11_VSTEETRR_RhaR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m49_VKSDMTRR_LacR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m50_VNSDMTRR_LacR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_3/cluster_6_node_3_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m11_VSTEETRR_RhaR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m49_VKSDMTRR_LacR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m50_VNSDMTRR_LacR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_2/cluster_6_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m26_AVSPQARR_SufR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m39_AQSPQARR_SufR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m25_AQTPQARR_SufR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m32_ALSPQARR_SufR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_3/cluster_5_node_3_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_2/cluster_5_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_2/cluster_5_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_3/cluster_6_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_3/cluster_6_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_2/cluster_6_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_2/cluster_6_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_3/cluster_5_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_3/cluster_5_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/IC_test_2026-07-02.140140_SdeTiL


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/IC_test_2026-07-02.140140_ZSgcxY


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/IC_test_2026-07-02.140140_esa7dR


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_3/cluster_6_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/IC_test_2026-07-02.140140_IPbZpT


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_3/cluster_5_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/IC_test_2026-07-02.140140_I8CPDx


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_2/cluster_5_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/IC_test_2026-07-02.140140_NmcOjP


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_2/cluster_6_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/IC_test_2026-07-02.140140_XudohM


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_3/cluster_6_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_2/cluster_5_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_2/cluster_6_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_3/cluster_5_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m12_LDSKNTRR_IolR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m19_MKSMITRR_RhaR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_4/cluster_6_node_4_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m18_SASLQARR_SufR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m26_AVSPQARR_SufR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m39_AQSPQARR_SufR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m25_AQTPQARR_SufR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m32_ALSPQARR_SufR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_4/cluster_5_node_4_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m24_TNSDMTRR_LacR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m11_VSTEETRR_RhaR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m49_VKSDMTRR_LacR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m50_VNSDMTRR_LacR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m12_LDSKNTRR_IolR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m19_MKSMITRR_RhaR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_5/cluster_6_node_5_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_4/cluster_6_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_4/cluster_6_node_4_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_4/cluster_5_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_4/cluster_5_node_4_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_5/cluster_6_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_5/cluster_6_node_5_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_5/cluster_6_nb_motifs_6.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/IC_test_2026-07-02.140141_YZmt9D


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_4/cluster_5_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/IC_test_2026-07-02.140141_KSWEiX


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_4/cluster_6_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/IC_test_2026-07-02.140141_3qfSn0


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_5/cluster_6_node_5_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_4/cluster_6_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_4/cluster_5_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m10_TESRDTRR_GlcR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m45_VESRDTRR_GlcR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_1/cluster_8_node_1_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_1/cluster_8_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_8 -name cluster_8 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_1/cluster_8_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_1/cluster_8_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/IC_test_2026-07-02.140142_Io29np


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_1/cluster_8_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m34_ITSAMTRR_GalR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m41_NC1]MTRR_GalR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_1/cluster_9_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m8_ISSEMTYR_CutR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m10_TESRDTRR_GlcR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/Collection_1_m45_VESRDTRR_GlcR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_2/cluster_8_node_2_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_1/cluster_9_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_1/cluster_9_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_2/cluster_8_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_8 -name cluster_8 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_2/cluster_8_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_1/cluster_9_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/IC_test_2026-07-02.140143_CcYUQT


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_2/cluster_8_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/IC_test_2026-07-02.140143_5KGNPF


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_1/cluster_9_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_2/cluster_8_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


rm -r /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_pairwise_compa_logos


cp /var/www/html/rsat/public_html/templates_html/display_d3_tree.html /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_logo_tree.html


cp /var/www/html/rsat/public_html/templates_html/display_small_d3_tree.html /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_portable_logo_tree.html


mv /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_temporary.html /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_logo_tree.html


mv /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_temporary_2.html /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_portable_logo_tree.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/pairwise_compa_matrix_descriptions.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_html/pairwise_compa_matrix_descriptions.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/distance_table.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/distance_table.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/alignment_table.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/alignment_table.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/clusters.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/clusters.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/clusters_motif_names.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/clusters_motif_names.html


mv -f /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_temporary_2.html /var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_portable_logo_tree.html
; matrix-clustering  -v 1 -max_matrices 300 -matrix Collection_1 $RSAT/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_query_matrices.meme meme -hclust_method average -calc sum -title deor -metric_build_tree Ncor -lth w 5 -lth cor 0.4 -lth Ncor 0.4 -quick -label_in_tree name -return json,heatmap -o $RSAT/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering
; Program version       	1.05
; Number of matrices          	51
; Output files
;	central_motifs              	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_central_motifs_IDs.tab
;	reference_compa             	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/Root_vs_reference_collection_compa.tab
;	clusters_table_motif_names  	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/clusters_motif_names.tab
;	coverage_json_folder        	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_coverage_json
;	html_index                  	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_html/index.html
;	archive                     	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_archive.zip
;	temp_html_2                 	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_temporary_2.html
;	ref_collection_tf           	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_reference_collection.tf
;	heatmap_coverage_attributes 	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/convergency_heatmap_attributes.tab
;	cluster_IDs_names           	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_cluster_IDs.txt
;	alignment_table             	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/alignment_table.tab
;	summary                     	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_SUMMARY.html
;	all_concatenated_motifs     	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
;	reference_compa_html        	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_html/Root_vs_reference_collection_compa.html
;	motif_richness_barplot_html 	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_motif_richness_barplot.html
;	radial_tree_template        	/var/www/html/rsat/public_html/templates_html/Radial_tree_template.html
;	root_motifs_table           	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_root_motifs_table.tab
;	matrix_descriptions         	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/pairwise_compa_matrix_descriptions.tab
;	err_log                     	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_errors.txt
;	int_align                   	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/intermediate_alignments.tab
;	clusters_table_motif_names_html	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/clusters_motif_names.html
;	percent_table               	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/clusters_summary_percent_table.tab
;	alignment_table_html        	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/alignment_table.html
;	nb_clusters_table           	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/number_of_clusters.tab
;	temp_html_3                 	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_temporary_3.html
;	cluster_summary_table       	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/clusters_summary_table.tab
;	matrix_descriptions_html    	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_html/pairwise_compa_matrix_descriptions.html
;	clusters_table              	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/clusters.tab
;	small_logo_cladogram_html   	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_portable_logo_tree.html
;	Rlog                        	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_Rlog.txt
;	consensus_cladogram_json    	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_trees/tree.json
;	central_motifs_tf           	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_central_motifs_transfac.tf
;	heatmap_coverage_d3         	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/convergency_heatmap_tab.tsv
;	small_forest_export         	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_small_forest.html
;	logo_cladogram_html         	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_logo_tree.html
;	summary_temp                	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_SUMMARY_TEMP.html
;	heatmap_pdf                 	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_figures/heatmap.pdf
;	distance_table              	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/distance_table.tab
;	pairwise_compa_html         	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_html/pairwise_compa.html
;	radial_tree                 	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_radial_tree.html
;	central_motifs_IDs_temp     	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_central_motifs_IDs_temporal.tab
;	pairwise_compa              	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/pairwise_compa.tab
;	temp_html                   	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_temporary.html
;	root_motifs                 	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_cluster_root_motifs.tf
;	heatmap_collections_attributes	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/collection_heatmap_order.tab
;	motif_richness_tsv          	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_motif_richness.tsv
;	distance_table_html         	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/distance_table.html
;	prefix                      	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering
;	dynamic_coverage_heatmap_html	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_dynamic_coverage_heatmap.html
;	log                         	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_log.txt
;	internal_nodes_attributes_table	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/internal_nodes_attributes.tab
;	heatmap_collections_d3      	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/collection_heatmap_tab.tsv
;	dynamic_heatmap_html        	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_dynamic_heatmap.html
;	hexa_colors                 	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_hexa_colors.txt
;	clusters_table_html         	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/clusters.html
;	coverage_table              	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_tables/clusters_summary_coverage_contingency_table.tab
;	heatmap_jpg                 	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_figures/heatmap.jpg
;	motif_file                  	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/input_motifs_processed.tf
;	input_matrices              	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data/input_motifs_processed.tf
; Directories
;	output                      	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw
;	data                        	/var/www/html/rsat/public_html/tmp/www-data/2026/07/02/matrix-clustering_2026-07-02.140117_qoCFYw/matrix-clustering_data
; Host name	rsat
; Job started	2026-07-02.140117
; Job done	2026-07-02.140147
; Seconds	1.01
;	user	1.01
;	system	0.49
;	cuser	47.04
;	csystem	11.98