; matrix-scan  -v 1 -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/07/02/matrix-scan_2026-07-02.183436_4tsrBt.matrix -pseudo 1 -decimals 1 -2str -origin end -bginput -markov 1 -bg_pseudo 0.01 -return limits -return sites -return pval -return rank -lth score 1 -uth pval 1e-4 -i $RSAT/public_html/tmp/www-data/2026/07/02/tmp_sequence_2026-07-02.183436_tPKx5z.fasta -seq_format fasta -n score
; Slow counting mode            
; Input files
;	input	$RSAT/public_html/tmp/www-data/2026/07/02/tmp_sequence_2026-07-02.183436_tPKx5z.fasta
; Matrix files
;	matrix 1	$RSAT/public_html/tmp/www-data/2026/07/02/matrix-scan_2026-07-02.183436_4tsrBt.matrix
; Sequence format      	fasta
; Pseudo counts        	1
; Background model
;	Method        	input
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.33393
;		c	0.18328
;		g	0.16879
;		t	0.31399
; Thresholds	lower	upper
;	pval  	NA	0.0001
;	score 	1    	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight	Pval	ln_Pval	sig	rank	rank_pm
CYP2C8_promoter	limit	START_END	D	-2871	-1	.	0	0	0	0
;
; Matrices
;	matrix	name     	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	RXRA::VDR	15	4	1	-34.100	17.700	51.800	a:0.334 c:0.183 g:0.169 t:0.314 
; Number of sequences scanned	1
; Sum of sequence lengths	2871
; N residues           	0
; Matches per matrix
;	matrix	name     	matches	scored
;	1	RXRA::VDR      	0	5714
;		TOTAL          	0	5714
; Host name	rsat
; Job started	2026-07-02.183436
; Job done	2026-07-02.183437
; Seconds	1.35
;	user	1.35
;	system	0.01
;	cuser	0.11
;	csystem	0.02