; dna-pattern -v 1 -pl $RSAT/public_html/tmp/www-data/2026/07/10/dna-pattern_2026-07-10.064353_Upyndy.pat -i $RSAT/public_html/tmp/www-data/2026/07/10/tmp_sequence_2026-07-10.064353_vSOL6G -format fasta -return sites -N 4 -return limits -2str -subst 2 ; Citation: van Helden et al. (2000). Yeast 16(2), 177-187. ; Input file $RSAT/public_html/tmp/www-data/2026/07/10/tmp_sequence_2026-07-10.064353_vSOL6G ; Input format fasta ; Pattern file $RSAT/public_html/tmp/www-data/2026/07/10/dna-pattern_2026-07-10.064353_Upyndy.pat ; Search method IUPAC ; Threshold 0 ; Allowed substitutions 2 ; Return fields ; limits ; sites ; Patterns ; seq id score ; ATCGTCNNNNYCGRC ATCGTCNNNNYCGRC 1 ; ; Matching positions ; PatID Strand Pattern SeqID Start End matching_seq Score START_END DR - NC_013590.2 1 135797 - 0.00 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 934 948 ACCGTCATCTCAGGC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 4354 4368 CTCGTCTGTGCCGTC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 8924 8938 ATCACCAGCACCGGC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 11727 11741 ATCGCCGAGATCTAC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 14124 14138 ATCGTCGTAGTCATC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 14838 14852 ATCGTCTAAACCGTC 0.93 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 14847 14861 ACCGTCTGGTCCGGG 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 14997 15011 ATCATGGTCGCCGGC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 15000 15014 ATGGTCGCCGGCGAC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 18549 18563 ATCGTCCGCGTCTGG 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 21518 21532 ATCGTCTCGCGGGAC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 27589 27603 ATCGTCCGCATCAAC 0.93 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 33736 33750 CACGTCAATATCGAC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 41251 41265 ATCATCCCTCTGGAC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 42245 42259 AGCATCACGTCCGGC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 43172 43186 ACCATCTCTACCGGC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 44037 44051 CTCGACGGTCTCGAC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 49064 49078 ATCGTTCACATCGAG 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 51316 51330 ATCCACATAATCGAC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 53083 53097 ATCGTCTCTGCCGTC 0.93 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 56568 56582 CTCGTTCGGGTCGGC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 56759 56773 ATCATCTTACACGGC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 58204 58218 ATCTGCCCACCCGGC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 58376 58390 ATCGTCGGGATTAAC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 68447 68461 ATCGTCACACCTCAC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 70942 70956 ATCATCCAACCCGTC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 73625 73639 ATCGTGATGGTGGGC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 78432 78446 ATCGTCAGATGCGCC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 87145 87159 ATCCTCTTCCCCGCC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 89564 89578 AGCGTCAAGACGGAC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 97214 97228 ATCGAGAGATCCGAC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 98210 98224 ATTGTCTGCATTGGC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 101934 101948 ACGGTCTCTACCGGC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 101967 101981 ATCGTCAAAATAGGT 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 104532 104546 ATCGGCTCTGCCGTC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 104853 104867 ATCGTCAGAATCATC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 109617 109631 GTCGTCCCCCCCGCC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 110749 110763 TTCGACTCCGTCGAC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 111377 111391 ACCGTCCATATCGGG 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 115271 115285 TTCGTCAGAGTCGGA 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 121388 121402 ATCGTCCCGCCATAC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 122919 122933 ATCTTCGAATTCCAC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 123685 123699 ATCGTTAACCCCAGC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 124291 124305 ATCTTCGCAGTCGCC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 127541 127555 ATCATCCCCATCGGG 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 127586 127600 ATCATCAGTTTCTAC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 129987 130001 ATCGAGATACCCGGC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 130875 130889 ATAGACCTCTTCGAC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 134394 134408 ACCGTCCGCACGGAC 0.87 ATCGTCNNNNYCGRC D ATCGTCNNNNYCGRC NC_013590.2 134883 134897 ATTGTCTCGGTCGAG 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 2653 2667 ATCGTCACCTTGTGC 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 4357 4371 ATCGACGGCACAGAC 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 4399 4413 CTCGTTTTGACCGAC 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 4608 4622 TTCGTCATCATCGAG 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 14276 14290 ATCTTCACCACCGAA 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 18701 18715 ATCGTCTGCGTGGGA 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 19892 19906 ATTCTCATCCCCGGC 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 24539 24553 ATCGCCGCACCCAAC 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 25020 25034 AGCGTCCAGATCCAC 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 29545 29559 ATCGTCAGGCTCTAG 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 33739 33753 ATAGTCGATATTGAC 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 33817 33831 ATCGTCAGGGTAGAA 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 34994 35008 ATCGAGGCTATCGGC 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 40819 40833 ATCATCATATCCGAG 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 43751 43765 ATCGTCCGCTGCTAC 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 50744 50758 ATTGTCAATTTCGAT 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 53562 53576 ATCGTCTACCTCGGT 0.93 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 60429 60443 ATCTTCCAGCTCAGC 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 60861 60875 ATCGAAGTCATCGAC 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 66263 66277 ATCCTCGACCTCTGC 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 70275 70289 CTCGTCGTCTTAGAC 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 72263 72277 ATCGTCGCTATCTAG 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 83898 83912 AACGTCAAGCCCGTC 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 84424 84438 TTCGTCCGCCTCGTC 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 88170 88184 AGCGTCACCCCCGAC 0.93 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 88875 88889 ATCATCTATATCGCC 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 89400 89414 ATCATGGAGCCCGGC 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 94758 94772 CTCCTCTATCTCGAC 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 95686 95700 ATCGTTTATCTAGAC 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 100569 100583 ATCCTCCATATCGGA 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 104299 104313 ATCAACCCCATCGAC 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 104914 104928 ATCGTCTAGTCTCGC 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 107336 107350 ATTGTCTCGGTCGAG 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 107825 107839 ACCGTCCGCACGGAC 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 111344 111358 ATAGACCTCTTCGAC 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 112232 112246 ATCGAGATACCCGGC 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 114633 114647 ATCATCAGTTTCTAC 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 114678 114692 ATCATCCCCATCGGG 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 120397 120411 ATCGTCCCCACAGCC 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 121725 121739 ATCTTCCCTACCAAC 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 124861 124875 ATCCCCCGGATCGAC 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 126948 126962 TTCGTCAGAGTCGGA 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 130842 130856 ACCGTCCATATCGGG 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 131470 131484 TTCGACTCCGTCGAC 0.87 ATCGTCNNNNYCGRC R ATCGTCNNNNYCGRC NC_013590.2 132602 132616 GTCGTCCCCCCCGCC 0.87 ; Host name rsat ; Job started 2026-07-10.064353 ; Job done 2026-07-10.064354 ; Seconds 0.74 ; user 0.74 ; system 0.01 ; cuser 0 ; csystem 0