; oligo-analysis -v 1 -sort -i $RSAT/public_html/tmp/www-data/2026/07/10/tmp_sequence_2026-07-10.105849_MwFmTr.fasta.purged -format fasta -lth occ_sig 0 -uth rank 50 -return freq,occ,proba,rank,ratio,zscore -2str -noov -quick_if_possible -seqtype dna -bg upstream-noorf -org Homo_sapiens_GRCh38 -pseudo 0.01 -l 4 -o $RSAT/public_html/tmp/www-data/2026/07/10/oligo-analysis_2026-07-10.105849_yMrI9W_4nt.tab
; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42.
; Program version 1.169
; Quick counting mode
; Detection of over-represented words (right-tail test)
; Oligomer length 4
; Input file $RSAT/public_html/tmp/www-data/2026/07/10/tmp_sequence_2026-07-10.105849_MwFmTr.fasta.purged
; Input format fasta
; Output file $RSAT/public_html/tmp/www-data/2026/07/10/oligo-analysis_2026-07-10.105849_yMrI9W_4nt.tab
; Discard overlapping matches
; Counted on both strands
; grouped by pairs of reverse complements
; Background model upstream-noorf
; Organism Homo_sapiens_GRCh38
; Background estimation method Frequency file
; Expected frequency file $RSAT/public_html/data/genomes/Homo_sapiens_GRCh38/oligo-frequencies/4nt_upstream-noorf_Homo_sapiens_GRCh38-noov-2str.freq
; Pseudo-frequency 0.01
; Pseudo-frequency per oligo 7.35294117647059e-05
; Sequence type DNA
; Nb of sequences 5062
; Sum of sequence lengths 1399185
; discarded residues NA (quick mode) (other letters than ACGT)
; discarded occurrences NA (quick mode) (contain discarded residues)
; nb possible positions NA (quick mode)
; total oligo occurrences 1186561
; total overlapping occurrences 44037
; total non overlapping occ 1142524
; alphabet size 4
; nb possible oligomers 136
; oligomers tested for significance 136
;
; column headers
; 1 seq oligomer sequence
; 2 id oligomer identifier
; 3 obs_freq observed relative frequency
; 4 exp_freq expected relative frequency
; 5 occ observed occurrences
; 6 exp_occ expected occurrences
; 7 occ_P occurrence probability (binomial)
; 8 occ_E E-value for occurrences (binomial)
; 9 occ_sig occurrence significance (binomial)
; 10 rank rank
; 11 ovl_occ number of overlapping occurrences (discarded from the count)
; 12 forbocc forbidden positions (to avoid self-overlap)
; 13 zscore z-score (Gaussian approximation)
; 14 exp_var estimation of the variance on occurrences
; 15 ratio observed/expected ratio
#seq id obs_freq exp_freq occ exp_occ occ_P occ_E occ_sig rank ovl_occ forbocc zscore exp_var ratio
ccgc ccgc|gcgg 0.0106071242861 0.0027877686570 12586 3307.86 0 0e+00 350.00 1 1116 37758 161.32 3307.858 3.8049
cccg cccg|cggg 0.0104335133213 0.0032878994693 12380 3901.29 0 0e+00 350.00 2 760 37140 135.75 3901.293 3.1733
cgcc cgcc|ggcg 0.0102169210011 0.0033514748720 12123 3976.73 0 0e+00 350.00 3 1128 36369 129.18 3976.729 3.0485
cggc cggc|gccg 0.0081378032819 0.0024277739276 9656 2880.70 0 0e+00 350.00 4 1158 28968 126.23 2880.702 3.3520
cgcg cgcg|cgcg 0.0037756170985 0.0007447827586 4480 883.73 0 0e+00 350.00 5 1004 13440 120.97 883.730 5.0694
cgga cgga|tccg 0.0062171266374 0.0018482367403 7377 2193.05 0 0e+00 350.00 6 275 22131 110.70 2193.046 3.3638
agcg agcg|cgct 0.0062533658194 0.0019033684787 7420 2258.46 0 0e+00 350.00 7 278 22260 108.61 2258.463 3.2854
gcgc gcgc|gcgc 0.0045408537783 0.0012202293268 5388 1447.88 0 0e+00 350.00 8 1066 16164 103.55 1447.877 3.7213
cgca cgca|tgcg 0.0054771731078 0.0017084024734 6499 2027.12 0 0e+00 350.00 9 288 19497 99.32 2027.124 3.2060
ccgg ccgg|ccgg 0.0049116733147 0.0015379841764 5828 1824.91 0 0e+00 350.00 10 0 17484 93.71 1824.912 3.1936
cgac cgac|gtcg 0.0037916297603 0.0010606045480 4499 1258.47 0 0e+00 350.00 11 95 13497 91.35 1258.472 3.5750
gcga gcga|tcgc 0.0049310570632 0.0016340766693 5851 1938.93 0 0e+00 350.00 12 124 17553 88.84 1938.932 3.0176
acgc acgc|gcgt 0.0050844415079 0.0017116649615 6033 2030.99 0 0e+00 350.00 13 129 18099 88.80 2030.995 2.9705
gccc gccc|gggc 0.0141846900412 0.0073316745028 16831 8699.48 0 0e+00 350.00 14 759 50493 87.18 8699.479 1.9347
accg accg|cggt 0.0045231555731 0.0014742147491 5367 1749.25 0 0e+00 350.00 15 95 16101 86.50 1749.246 3.0682
cgtc cgtc|gacg 0.0046377725208 0.0015337443790 5503 1819.88 0 0e+00 350.00 16 253 16509 86.34 1819.881 3.0238
ccga ccga|tcgg 0.0051198379182 0.0018350574380 6075 2177.41 0 0e+00 350.00 17 0 18225 83.53 2177.408 2.7900
cccc cccc|gggg 0.0123356489890 0.0064110132776 14637 7607.06 0 0e+00 350.00 18 4624 43911 80.60 7607.058 1.9241
cgag cgag|ctcg 0.0057881558555 0.0023630703077 6868 2803.93 0 0e+00 350.00 19 200 20604 76.75 2803.927 2.4494
acgg acgg|ccgt 0.0047397478933 0.0018014768054 5624 2137.56 0 0e+00 350.00 20 0 16872 75.41 2137.562 2.6310
aacg aacg|cgtt 0.0038067996504 0.0013793870095 4517 1636.73 0 0e+00 350.00 21 131 13551 71.19 1636.727 2.7598
cacg cacg|cgtg 0.0053979525705 0.0024918307988 6405 2956.71 0 0e+00 350.00 22 322 19215 63.42 2956.709 2.1663
cgaa cgaa|ttcg 0.0034654771225 0.0013510953445 4112 1603.16 0 0e+00 350.00 23 94 12336 62.66 1603.157 2.5649
ggcc ggcc|ggcc 0.0068340355026 0.0038889302736 8109 4614.45 0 0e+00 350.00 24 0 24327 51.44 4614.453 1.7573
aggg aggg|ccct 0.0134843467803 0.0090085431169 16000 10689.19 0 0e+00 350.00 25 0 48000 51.37 10689.186 1.4968
ggac ggac|gtcc 0.0081487593137 0.0050367152895 9669 5976.37 0 0e+00 350.00 26 0 29007 47.77 5976.370 1.6179
acga acga|tcgt 0.0028746941792 0.0013461728678 3411 1597.32 0 0e+00 350.00 27 35 10233 45.38 1597.316 2.1355
cgta cgta|tacg 0.0022164895020 0.0009479984036 2630 1124.86 2e-319 3e-317 316.57 28 157 7890 44.88 1124.858 2.3381
gagc gagc|gctc 0.0098216610861 0.0068096835825 11654 8080.10 2e-306 2e-304 303.68 29 419 34962 39.76 8080.105 1.4423
ggga ggga|tccc 0.0138138705048 0.0102143486822 16391 12119.95 5e-300 6e-298 297.21 30 0 49173 38.80 12119.948 1.3524
accc accc|gggt 0.0095595590956 0.0067400502998 11343 7997.48 3e-273 3e-271 270.47 31 0 34029 37.41 7997.481 1.4183
acgt acgt|acgt 0.0019788278900 0.0009084964269 2348 1077.99 4e-245 6e-243 242.24 32 0 7044 38.68 1077.986 2.1781
gacc gacc|ggtc 0.0073026165532 0.0051155180322 8665 6069.87 3e-216 4e-214 213.42 33 0 25995 33.31 6069.874 1.4275
ctcc ctcc|ggag 0.0145420252309 0.0114687107067 17255 13608.32 2e-200 2e-198 197.61 34 665 51765 31.26 13608.325 1.2680
cctc cctc|gagg 0.0138568518601 0.0110413391293 16442 13101.22 1e-175 2e-173 172.76 35 627 49326 29.19 13101.222 1.2550
atcg atcg|cgat 0.0021591810282 0.0012314037082 2562 1461.14 2e-149 3e-147 146.57 36 85 7686 28.80 1461.136 1.7534
ctgc ctgc|gcag 0.0112939832002 0.0092424577695 13401 10966.74 5e-113 7e-111 110.19 37 1013 40203 23.24 10966.740 1.2220
ccac ccac|gtgg 0.0106467345547 0.0087252240456 12633 10353.01 3e-105 5e-103 102.34 38 327 37899 22.41 10353.011 1.2202
tcga tcga|tcga 0.0012776418574 0.0006976994493 1516 827.86 6e-102 9e-100 99.06 39 0 4548 23.92 827.863 1.8312
ggaa ggaa|ttcc 0.0118679107100 0.0099528609744 14082 11809.68 9.6e-93 1.3e-90 89.88 40 0 42246 20.91 11809.677 1.1924
agcc agcc|ggct 0.0112518446165 0.0095189069318 13351 11294.76 6.4e-80 8.7e-78 77.06 41 0 40053 19.35 11294.764 1.1821
cttc cttc|gaag 0.0105447591822 0.0089888819548 12512 10665.86 1.1e-68 1.5e-66 65.82 42 267 37536 17.88 10665.857 1.1731
gcac gcac|gtgc 0.0073127298133 0.0061167857105 8677 7257.94 2.4e-59 3.3e-57 56.49 43 280 26031 16.66 7257.939 1.1955
ccca ccca|tggg 0.0136200330198 0.0119844784667 16161 14220.31 4.5e-58 6.1e-56 55.21 44 0 48483 16.27 14220.315 1.1365
cagc cagc|gctg 0.0115771544826 0.0100927886606 13737 11975.71 1.5e-56 2.0e-54 53.70 45 927 41211 16.09 11975.709 1.1471
cacc cacc|ggtg 0.0096067543093 0.0085711972364 11399 10170.25 1.8e-33 2.4e-31 30.62 46 317 34197 12.18 10170.248 1.1208
gcca gcca|tggc 0.0094617975814 0.0084799625454 11227 10061.99 1.2e-30 1.6e-28 27.78 47 408 33681 11.61 10061.993 1.1158
aagg aagg|cctt 0.0101663547007 0.0091946486643 12063 10910.01 5.7e-28 7.7e-26 25.11 48 0 36189 11.04 10910.012 1.1057
acac acac|gtgt 0.0078175500459 0.0070330562304 9276 8345.15 5e-24 6.8e-22 21.17 49 1360 27828 10.19 8345.150 1.1115
aggc aggc|gcct 0.0110310384380 0.0101047032099 13089 11989.85 1.4e-23 1.9e-21 20.72 50 568 39267 10.04 11989.847 1.0917
; Host name rsat
; Job started 2026-07-10.105855
; Job done 2026-07-10.105855
; Seconds 0.46
; user 0.46
; system 0.03
; cuser 0.27
; csystem 0.03
; oligo-analysis -v 1 -sort -i $RSAT/public_html/tmp/www-data/2026/07/10/tmp_sequence_2026-07-10.105849_MwFmTr.fasta.purged -format fasta -lth occ_sig 0 -uth rank 50 -return freq,occ,proba,rank,ratio,zscore -2str -noov -quick_if_possible -seqtype dna -bg upstream-noorf -org Homo_sapiens_GRCh38 -pseudo 0.01 -l 5 -o $RSAT/public_html/tmp/www-data/2026/07/10/oligo-analysis_2026-07-10.105849_yMrI9W_5nt.tab
; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42.
; Program version 1.169
; Quick counting mode
; Detection of over-represented words (right-tail test)
; Oligomer length 5
; Input file $RSAT/public_html/tmp/www-data/2026/07/10/tmp_sequence_2026-07-10.105849_MwFmTr.fasta.purged
; Input format fasta
; Output file $RSAT/public_html/tmp/www-data/2026/07/10/oligo-analysis_2026-07-10.105849_yMrI9W_5nt.tab
; Discard overlapping matches
; Counted on both strands
; grouped by pairs of reverse complements
; Background model upstream-noorf
; Organism Homo_sapiens_GRCh38
; Background estimation method Frequency file
; Expected frequency file $RSAT/public_html/data/genomes/Homo_sapiens_GRCh38/oligo-frequencies/5nt_upstream-noorf_Homo_sapiens_GRCh38-noov-2str.freq
; Pseudo-frequency 0.01
; Pseudo-frequency per oligo 1.953125e-05
; Sequence type DNA
; Nb of sequences 5062
; Sum of sequence lengths 1399185
; discarded residues NA (quick mode) (other letters than ACGT)
; discarded occurrences NA (quick mode) (contain discarded residues)
; nb possible positions NA (quick mode)
; total oligo occurrences 1177892
; total overlapping occurrences 36053
; total non overlapping occ 1141839
; alphabet size 4
; nb possible oligomers 512
; oligomers tested for significance 512
;
; column headers
; 1 seq oligomer sequence
; 2 id oligomer identifier
; 3 obs_freq observed relative frequency
; 4 exp_freq expected relative frequency
; 5 occ observed occurrences
; 6 exp_occ expected occurrences
; 7 occ_P occurrence probability (binomial)
; 8 occ_E E-value for occurrences (binomial)
; 9 occ_sig occurrence significance (binomial)
; 10 rank rank
; 11 ovl_occ number of overlapping occurrences (discarded from the count)
; 12 forbocc forbidden positions (to avoid self-overlap)
; 13 zscore z-score (Gaussian approximation)
; 14 exp_var estimation of the variance on occurrences
; 15 ratio observed/expected ratio
#seq id obs_freq exp_freq occ exp_occ occ_P occ_E occ_sig rank ovl_occ forbocc zscore exp_var ratio
gccgc gccgc|gcggc 0.0032388368373 0.0006826646724 3815 804.11 0 0e+00 350.00 1 371 15260 106.18 804.105 4.7444
cgccg cgccg|cggcg 0.0024246705131 0.0004220620926 2856 497.14 0 0e+00 350.00 2 229 11424 105.79 497.144 5.7448
cccgc cccgc|gcggg 0.0041421454599 0.0010869449605 4879 1280.30 0 0e+00 350.00 3 148 19516 100.57 1280.304 3.8108
ccgcg ccgcg|cgcgg 0.0023728830827 0.0004387862153 2795 516.84 0 0e+00 350.00 4 686 11180 100.21 516.843 5.4078
ccgcc ccgcc|ggcgg 0.0044104213290 0.0012805214610 5195 1508.32 0 0e+00 350.00 5 337 20780 94.93 1508.316 3.4442
ccccg ccccg|cgggg 0.0038093475463 0.0010864914005 4487 1279.77 0 0e+00 350.00 6 74 17948 89.65 1279.770 3.5061
cgccc cgccc|gggcg 0.0039706526575 0.0011875416743 4677 1398.80 0 0e+00 350.00 7 135 18708 87.65 1398.796 3.3436
cgcgc cgcgc|gcgcg 0.0019916936357 0.0004294846370 2346 505.89 0 0e+00 350.00 8 1178 9384 81.81 505.887 4.6374
acgcg acgcg|cgcgt 0.0011664906460 0.0001864557048 1374 219.62 0 0e+00 350.00 9 142 5496 77.89 219.625 6.2561
agcgg agcgg|ccgct 0.0021215866990 0.0005254881566 2499 618.97 0 0e+00 350.00 10 0 9996 75.57 618.968 4.0374
ccgga ccgga|tccgg 0.0018898167234 0.0004399813097 2226 518.25 0 0e+00 350.00 11 275 8904 75.02 518.250 4.2952
agcgc agcgc|gcgct 0.0017981275024 0.0004137828240 2118 487.39 0 0e+00 350.00 12 306 8472 73.86 487.391 4.3456
cgcag cgcag|ctgcg 0.0023321323177 0.0006504763157 2747 766.19 0 0e+00 350.00 13 51 10988 71.56 766.191 3.5853
cggaa cggaa|ttccg 0.0017684134029 0.0004207086122 2083 495.55 0 0e+00 350.00 14 32 8332 71.31 495.549 4.2034
cgctc cgctc|gagcg 0.0021156438791 0.0005717512699 2492 673.46 0 0e+00 350.00 15 53 9968 70.08 673.461 3.7003
gcccc gcccc|ggggc 0.0050174379315 0.0020769799062 5910 2446.46 0 0e+00 350.00 16 62 23640 70.02 2446.458 2.4157
gcgcc gcgcc|ggcgc 0.0026038040839 0.0007923685818 3067 933.32 0 0e+00 350.00 17 641 12268 69.84 933.325 3.2861
cgggc cgggc|gcccg 0.0028678350817 0.0009196677369 3378 1083.27 0 0e+00 350.00 18 160 13512 69.72 1083.269 3.1183
gacgc gacgc|gcgtc 0.0015587167584 0.0003543088776 1836 417.34 0 0e+00 350.00 19 12 7344 69.44 417.338 4.3993
cggag cggag|ctccg 0.0026080489553 0.0008095318657 3072 953.54 0 0e+00 350.00 20 49 12288 68.60 953.541 3.2217
cccgg cccgg|ccggg 0.0030248953215 0.0010248432463 3563 1207.15 0 0e+00 350.00 21 760 14252 67.81 1207.155 2.9516
cgcga cgcga|tcgcg 0.0010875360390 0.0002055772157 1281 242.15 0 0e+00 350.00 22 128 5124 66.76 242.148 5.2902
cggcc cggcc|ggccg 0.0026623833085 0.0008693009860 3136 1023.94 0 0e+00 350.00 23 488 12544 66.00 1023.943 3.0627
cagcg cagcg|cgctg 0.0021750720779 0.0006399580449 2562 753.80 0 0e+00 350.00 24 35 10248 65.86 753.801 3.3988
gcgga gcgga|tccgc 0.0021232846475 0.0006291805969 2501 741.11 0 0e+00 350.00 25 18 10004 64.65 741.107 3.3747
ctcgc ctcgc|gcgag 0.0019526408194 0.0005539688407 2300 652.52 0 0e+00 350.00 26 50 9200 64.49 652.515 3.5248
cgtcc cgtcc|ggacg 0.0016521039280 0.0004286783081 1946 504.94 0 0e+00 350.00 27 14 7784 64.13 504.937 3.8539
ccggc ccggc|gccgg 0.0024357071786 0.0007967097983 2869 938.44 0 0e+00 350.00 28 476 11476 63.02 938.438 3.0572
cgacg cgacg|cgtcg 0.0008031296587 0.0001365857100 946 160.88 0 0e+00 350.00 29 25 3784 61.90 160.883 5.8800
cggga cggga|tcccg 0.0025324902453 0.0008685954483 2983 1023.11 0 0e+00 350.00 30 42 11932 61.27 1023.112 2.9156
ccgca ccgca|tgcgg 0.0018202008334 0.0005344153679 2144 629.48 0 0e+00 350.00 31 0 8576 60.36 629.484 3.4060
cgacc cgacc|ggtcg 0.0012777062753 0.0003081105585 1505 362.92 0 0e+00 350.00 32 6 6020 59.95 362.921 4.1469
cgagc cgagc|gctcg 0.0014950436882 0.0003969363121 1761 467.55 0 0e+00 350.00 33 35 7044 59.82 467.548 3.7665
gcgac gcgac|gtcgc 0.0013362854999 0.0003392550073 1574 399.61 0 0e+00 350.00 34 8 6296 58.75 399.606 3.9389
accgc accgc|gcggt 0.0016088062403 0.0004682388137 1895 551.53 0 0e+00 350.00 35 18 7580 57.21 551.535 3.4359
ccgac ccgac|gtcgg 0.0012590288414 0.0003194783543 1483 376.31 0 0e+00 350.00 36 4 5932 57.05 376.311 3.9409
ggcga ggcga|tcgcc 0.0017166259725 0.0005217732846 2022 614.59 0 0e+00 350.00 37 0 8088 56.77 614.593 3.2900
gcgca gcgca|tgcgc 0.0015604147070 0.0004513707036 1838 531.67 0 0e+00 350.00 38 303 7352 56.65 531.666 3.4571
cggtc cggtc|gaccg 0.0012106373080 0.0003030854023 1426 357.00 0 0e+00 350.00 39 10 5704 56.58 357.002 3.9944
cgcac cgcac|gtgcg 0.0015892798321 0.0004689083544 1872 552.32 0 0e+00 350.00 40 45 7488 56.15 552.323 3.3893
cggac cggac|gtccg 0.0012080903852 0.0003078297833 1423 362.59 0 0e+00 350.00 41 15 5692 55.69 362.590 3.9245
ggccc ggccc|gggcc 0.0036081406445 0.0015835210957 4250 1865.22 0 0e+00 350.00 42 759 17000 55.22 1865.217 2.2786
acggc acggc|gccgt 0.0013379834484 0.0003684700267 1576 434.02 0 0e+00 350.00 43 8 6304 54.82 434.018 3.6312
cctcg cctcg|cgagg 0.0021597905411 0.0008007126447 2544 943.15 0 0e+00 350.00 44 23 10176 52.13 943.153 2.6973
cccga cccga|tcggg 0.0017573767374 0.0005918158975 2070 697.10 0 0e+00 350.00 45 0 8280 52.00 697.095 2.9695
aacgc aacgc|gcgtt 0.0011384744951 0.0003078297833 1341 362.59 0 0e+00 350.00 46 7 5364 51.38 362.590 3.6984
accgg accgg|ccggt 0.0011393234694 0.0003154395111 1342 371.55 0 0e+00 350.00 47 95 5368 50.35 371.554 3.6119
agccg agccg|cggct 0.0020248036323 0.0007683299052 2385 905.01 0 0e+00 350.00 48 24 9540 49.20 905.010 2.6353
cgcca cgcca|tggcg 0.0019653754334 0.0007425273844 2315 874.62 0 0e+00 350.00 49 27 9260 48.70 874.617 2.6469
gctcc gctcc|ggagc 0.0036505893579 0.0018613373549 4300 2192.45 0 0e+00 350.00 50 47 17200 45.01 2192.454 1.9613
; Host name rsat
; Job started 2026-07-10.105856
; Job done 2026-07-10.105856
; Seconds 0.53
; user 0.53
; system 0.02
; cuser 0.28
; csystem 0.02
; oligo-analysis -v 1 -sort -i $RSAT/public_html/tmp/www-data/2026/07/10/tmp_sequence_2026-07-10.105849_MwFmTr.fasta.purged -format fasta -lth occ_sig 0 -uth rank 50 -return freq,occ,proba,rank,ratio,zscore -2str -noov -quick_if_possible -seqtype dna -bg upstream-noorf -org Homo_sapiens_GRCh38 -pseudo 0.01 -l 6 -o $RSAT/public_html/tmp/www-data/2026/07/10/oligo-analysis_2026-07-10.105849_yMrI9W_6nt.tab
; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42.
; Program version 1.169
; Quick counting mode
; Detection of over-represented words (right-tail test)
; Oligomer length 6
; Input file $RSAT/public_html/tmp/www-data/2026/07/10/tmp_sequence_2026-07-10.105849_MwFmTr.fasta.purged
; Input format fasta
; Output file $RSAT/public_html/tmp/www-data/2026/07/10/oligo-analysis_2026-07-10.105849_yMrI9W_6nt.tab
; Discard overlapping matches
; Counted on both strands
; grouped by pairs of reverse complements
; Background model upstream-noorf
; Organism Homo_sapiens_GRCh38
; Background estimation method Frequency file
; Expected frequency file $RSAT/public_html/data/genomes/Homo_sapiens_GRCh38/oligo-frequencies/6nt_upstream-noorf_Homo_sapiens_GRCh38-noov-2str.freq
; Pseudo-frequency 0.01
; Pseudo-frequency per oligo 4.80769230769231e-06
; Sequence type DNA
; Nb of sequences 5062
; Sum of sequence lengths 1399185
; discarded residues NA (quick mode) (other letters than ACGT)
; discarded occurrences NA (quick mode) (contain discarded residues)
; nb possible positions NA (quick mode)
; total oligo occurrences 1173349
; total overlapping occurrences 14839
; total non overlapping occ 1158510
; alphabet size 4
; nb possible oligomers 2080
; oligomers tested for significance 2080
;
; column headers
; 1 seq oligomer sequence
; 2 id oligomer identifier
; 3 obs_freq observed relative frequency
; 4 exp_freq expected relative frequency
; 5 occ observed occurrences
; 6 exp_occ expected occurrences
; 7 occ_P occurrence probability (binomial)
; 8 occ_E E-value for occurrences (binomial)
; 9 occ_sig occurrence significance (binomial)
; 10 rank rank
; 11 ovl_occ number of overlapping occurrences (discarded from the count)
; 12 forbocc forbidden positions (to avoid self-overlap)
; 13 zscore z-score (Gaussian approximation)
; 14 exp_var estimation of the variance on occurrences
; 15 ratio observed/expected ratio
#seq id obs_freq exp_freq occ exp_occ occ_P occ_E occ_sig rank ovl_occ forbocc zscore exp_var ratio
ccgccc ccgccc|gggcgg 0.0018673046127 0.0004585701798 2191 538.06 0 0e+00 350.00 1 72 10955 71.26 538.063 4.0720
cgccgc cgccgc|gcggcg 0.0010866332182 0.0001894483390 1275 222.29 0 0e+00 350.00 2 113 6375 70.61 222.289 5.7358
cgcccc cgcccc|ggggcg 0.0015741267091 0.0003557544934 1847 417.42 0 0e+00 350.00 3 62 9235 69.97 417.424 4.4248
ccccgc ccccgc|gcgggg 0.0016559437985 0.0003971240762 1943 465.97 0 0e+00 350.00 4 53 9715 68.42 465.965 4.1698
cccgcg cccgcg|cgcggg 0.0009383397438 0.0001592363782 1101 186.84 0 0e+00 350.00 5 80 5505 66.88 186.840 5.8927
cgcggc cgcggc|gccgcg 0.0008999879831 0.0001507205932 1056 176.85 0 0e+00 350.00 6 98 5280 66.11 176.848 5.9712
gcggcc gcggcc|ggccgc 0.0010678834686 0.0002155211820 1253 252.88 0 0e+00 350.00 7 106 6265 62.89 252.882 4.9549
cggggc cggggc|gccccg 0.0013644704176 0.0003223680092 1601 378.25 0 0e+00 350.00 8 62 8005 62.87 378.250 4.2326
gccgcc gccgcc|ggcggc 0.0012357789541 0.0002758587220 1450 323.68 0 0e+00 350.00 9 129 7250 62.60 323.679 4.4798
cggcgc cggcgc|gcgccg 0.0008164663710 0.0001410242599 958 165.47 0 0e+00 350.00 10 59 4790 61.61 165.471 5.7895
cccgcc cccgcc|ggcggg 0.0019099176801 0.0005791084890 2241 679.50 0 0e+00 350.00 11 73 11205 59.90 679.496 3.2980
ccgccg ccgccg|cggcgg 0.0008999879831 0.0001753825369 1056 205.78 0 0e+00 350.00 12 85 5280 59.27 205.785 5.1316
ccgcgc ccgcgc|gcgcgg 0.0010167477877 0.0002188684685 1193 256.81 0 0e+00 350.00 13 81 5965 58.42 256.809 4.6455
cggaag cggaag|cttccg 0.0007798191331 0.0001504902423 915 176.58 0 0e+00 350.00 14 9 4575 55.57 176.578 5.1819
gcggga gcggga|tcccgc 0.0009485668799 0.0002158811052 1113 253.30 0 0e+00 350.00 15 5 5565 54.02 253.304 4.3939
ccccgg ccccgg|ccgggg 0.0010508382416 0.0002603748221 1233 305.51 0 0e+00 350.00 16 74 6165 53.06 305.511 4.0359
cgggcc cgggcc|ggcccg 0.0008923176310 0.0002010666628 1047 235.92 0 0e+00 350.00 17 70 5235 52.81 235.921 4.4379
cggccc cggccc|gggccg 0.0010090774356 0.0002476119423 1184 290.54 0 0e+00 350.00 18 15 5920 52.42 290.535 4.0752
ccggcg ccggcg|cgccgg 0.0007090814412 0.0001288516543 832 151.19 4e-323 8e-320 319.09 19 39 4160 55.37 151.188 5.5031
cgggga cgggga|tccccg 0.0009443055732 0.0002314945775 1108 271.62 6e-316 1e-312 311.89 20 5 5540 50.75 271.624 4.0792
agggcg agggcg|cgccct 0.0008301025526 0.0001917590465 974 225.00 4e-297 8e-294 293.11 21 2 4870 49.93 225.000 4.3289
ccgctc ccgctc|gagcgg 0.0007559558154 0.0001608344376 887 188.71 2e-295 4e-292 291.45 22 3 4435 50.83 188.715 4.7002
cccgga cccgga|tccggg 0.0007874894852 0.0001770237871 924 207.71 2e-290 4e-287 286.42 23 0 4620 49.70 207.711 4.4485
cgctcc cgctcc|ggagcg 0.0007968643600 0.0001836319787 935 215.46 4e-286 9e-283 282.06 24 11 4675 49.02 215.464 4.3395
cgcgga cgcgga|tccgcg 0.0005062432405 0.0000730923385 594 85.76 5e-281 1e-277 276.97 25 19 2970 54.88 85.763 6.9261
gcccgc gcccgc|gcgggc 0.0010499859803 0.0003088204967 1232 362.35 9e-280 2e-276 275.71 26 32 6160 45.69 362.354 3.4000
ccggaa ccggaa|ttccgg 0.0006349347040 0.0001197743889 745 140.54 1e-279 2e-276 275.63 27 32 3725 50.99 140.537 5.3011
cctcgc cctcgc|gcgagg 0.0007738533037 0.0001786434419 908 209.61 2e-277 5e-274 273.33 28 4 4540 48.24 209.611 4.3318
agcgcg agcgcg|cgcgct 0.0005377769104 0.0000870285682 631 102.11 7e-272 1e-268 267.85 29 31 3155 52.34 102.115 6.1793
cggagc cggagc|gctccg 0.0008113528030 0.0001993462294 952 233.90 5e-271 1e-267 267.02 30 9 4760 46.95 233.903 4.0701
ccgcgg ccgcgg|ccgcgg 0.0005284020355 0.0000858840122 620 100.77 3e-266 7e-263 262.16 31 0 3100 51.72 100.772 6.1525
ccggag ccggag|ctccgg 0.0007508422473 0.0001789817698 881 210.01 9e-260 2e-256 255.74 32 49 4405 46.30 210.008 4.1951
cgggac cgggac|gtcccg 0.0006332301813 0.0001293483484 743 151.77 3e-258 6e-255 254.24 33 4 3715 47.99 151.771 4.8955
agcggc agcggc|gccgct 0.0006741387260 0.0001478843978 791 173.52 2e-255 3e-252 251.46 34 2 3955 46.88 173.520 4.5586
cgcgcc cgcgcc|ggcgcg 0.0009093628579 0.0002595973878 1067 304.60 2e-252 4e-249 248.36 35 60 5335 43.68 304.598 3.5030
cgcgag cgcgag|ctcgcg 0.0004721527866 0.0000718973932 554 84.36 3e-251 5e-248 247.28 36 32 2770 51.13 84.361 6.5670
cgcagc cgcagc|gctgcg 0.0007602171221 0.0001903265518 892 223.32 1e-248 3e-245 244.59 37 7 4460 44.75 223.319 3.9943
ctccgc ctccgc|gcggag 0.0009860663792 0.0003026442131 1157 355.11 7e-248 1e-244 243.83 38 5 5785 42.55 355.107 3.2582
agccgc agccgc|gcggct 0.0007065246572 0.0001679969111 829 197.12 3e-245 6e-242 241.23 39 1 4145 45.01 197.119 4.2056
cccccg cccccg|cggggg 0.0009144764260 0.0002701647355 1073 317.00 2e-242 4e-239 238.42 40 4 5365 42.46 316.998 3.3849
agcgcc agcgcc|ggcgct 0.0006707296806 0.0001546365586 787 181.44 5e-241 1e-237 237.00 41 0 3935 44.96 181.443 4.3375
ccgcag ccgcag|ctgcgg 0.0007781146104 0.0002039676444 913 239.33 7e-241 1e-237 236.83 42 0 4565 43.55 239.325 3.8149
cagcgc cagcgc|gcgctg 0.0007099337026 0.0001728126847 833 202.77 5e-240 1e-236 235.95 43 42 4165 44.26 202.770 4.1081
cgtccc cgtccc|gggacg 0.0006485708856 0.0001464447046 761 171.83 2e-238 4e-235 234.42 44 2 3805 44.95 171.831 4.4288
gagcgc gagcgc|gcgctc 0.0006315256586 0.0001398653069 741 164.11 4e-237 9e-234 233.05 45 30 3705 45.03 164.111 4.5152
cacgcg cacgcg|cgcgtg 0.0004695960026 0.0000769723116 551 90.32 4e-235 8e-232 231.09 46 22 2755 48.48 90.315 6.1008
gcgccc gcgccc|gggcgc 0.0009664643682 0.0003078990931 1134 361.27 2e-230 5e-227 226.31 47 58 5670 40.65 361.273 3.1389
acgcgc acgcgc|gcgcgt 0.0004355055486 0.0000691763731 511 81.17 5e-224 9e-221 220.03 48 15 2555 47.71 81.168 6.2956
ctgcgc ctgcgc|gcgcag 0.0007380583271 0.0001970931097 866 231.26 2e-223 4e-220 219.41 49 55 4330 41.74 231.259 3.7447
agcggg agcggg|cccgct 0.0007005588278 0.0001793344946 822 210.42 2e-223 5e-220 219.32 50 0 4110 42.16 210.422 3.9064
; Host name rsat
; Job started 2026-07-10.105856
; Job done 2026-07-10.105857
; Seconds 0.7
; user 0.71
; system 0.01
; cuser 0.28
; csystem 0.02