; oligo-analysis -v 1 -sort -i $RSAT/public_html/tmp/www-data/2026/07/10/tmp_sequence_2026-07-10.105849_MwFmTr.fasta.purged -format fasta -lth occ_sig 0 -uth rank 50 -return freq,occ,proba,rank,ratio,zscore -2str -noov -quick_if_possible -seqtype dna -bg upstream-noorf -org Homo_sapiens_GRCh38 -pseudo 0.01 -l 6 -o $RSAT/public_html/tmp/www-data/2026/07/10/oligo-analysis_2026-07-10.105849_yMrI9W_6nt.tab
; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42.
; Program version 1.169
; Quick counting mode
; Detection of over-represented words (right-tail test)
; Oligomer length 6
; Input file $RSAT/public_html/tmp/www-data/2026/07/10/tmp_sequence_2026-07-10.105849_MwFmTr.fasta.purged
; Input format fasta
; Output file $RSAT/public_html/tmp/www-data/2026/07/10/oligo-analysis_2026-07-10.105849_yMrI9W_6nt.tab
; Discard overlapping matches
; Counted on both strands
; grouped by pairs of reverse complements
; Background model upstream-noorf
; Organism Homo_sapiens_GRCh38
; Background estimation method Frequency file
; Expected frequency file $RSAT/public_html/data/genomes/Homo_sapiens_GRCh38/oligo-frequencies/6nt_upstream-noorf_Homo_sapiens_GRCh38-noov-2str.freq
; Pseudo-frequency 0.01
; Pseudo-frequency per oligo 4.80769230769231e-06
; Sequence type DNA
; Nb of sequences 5062
; Sum of sequence lengths 1399185
; discarded residues NA (quick mode) (other letters than ACGT)
; discarded occurrences NA (quick mode) (contain discarded residues)
; nb possible positions NA (quick mode)
; total oligo occurrences 1173349
; total overlapping occurrences 14839
; total non overlapping occ 1158510
; alphabet size 4
; nb possible oligomers 2080
; oligomers tested for significance 2080
;
; column headers
; 1 seq oligomer sequence
; 2 id oligomer identifier
; 3 obs_freq observed relative frequency
; 4 exp_freq expected relative frequency
; 5 occ observed occurrences
; 6 exp_occ expected occurrences
; 7 occ_P occurrence probability (binomial)
; 8 occ_E E-value for occurrences (binomial)
; 9 occ_sig occurrence significance (binomial)
; 10 rank rank
; 11 ovl_occ number of overlapping occurrences (discarded from the count)
; 12 forbocc forbidden positions (to avoid self-overlap)
; 13 zscore z-score (Gaussian approximation)
; 14 exp_var estimation of the variance on occurrences
; 15 ratio observed/expected ratio
#seq id obs_freq exp_freq occ exp_occ occ_P occ_E occ_sig rank ovl_occ forbocc zscore exp_var ratio
ccgccc ccgccc|gggcgg 0.0018673046127 0.0004585701798 2191 538.06 0 0e+00 350.00 1 72 10955 71.26 538.063 4.0720
cgccgc cgccgc|gcggcg 0.0010866332182 0.0001894483390 1275 222.29 0 0e+00 350.00 2 113 6375 70.61 222.289 5.7358
cgcccc cgcccc|ggggcg 0.0015741267091 0.0003557544934 1847 417.42 0 0e+00 350.00 3 62 9235 69.97 417.424 4.4248
ccccgc ccccgc|gcgggg 0.0016559437985 0.0003971240762 1943 465.97 0 0e+00 350.00 4 53 9715 68.42 465.965 4.1698
cccgcg cccgcg|cgcggg 0.0009383397438 0.0001592363782 1101 186.84 0 0e+00 350.00 5 80 5505 66.88 186.840 5.8927
cgcggc cgcggc|gccgcg 0.0008999879831 0.0001507205932 1056 176.85 0 0e+00 350.00 6 98 5280 66.11 176.848 5.9712
gcggcc gcggcc|ggccgc 0.0010678834686 0.0002155211820 1253 252.88 0 0e+00 350.00 7 106 6265 62.89 252.882 4.9549
cggggc cggggc|gccccg 0.0013644704176 0.0003223680092 1601 378.25 0 0e+00 350.00 8 62 8005 62.87 378.250 4.2326
gccgcc gccgcc|ggcggc 0.0012357789541 0.0002758587220 1450 323.68 0 0e+00 350.00 9 129 7250 62.60 323.679 4.4798
cggcgc cggcgc|gcgccg 0.0008164663710 0.0001410242599 958 165.47 0 0e+00 350.00 10 59 4790 61.61 165.471 5.7895
cccgcc cccgcc|ggcggg 0.0019099176801 0.0005791084890 2241 679.50 0 0e+00 350.00 11 73 11205 59.90 679.496 3.2980
ccgccg ccgccg|cggcgg 0.0008999879831 0.0001753825369 1056 205.78 0 0e+00 350.00 12 85 5280 59.27 205.785 5.1316
ccgcgc ccgcgc|gcgcgg 0.0010167477877 0.0002188684685 1193 256.81 0 0e+00 350.00 13 81 5965 58.42 256.809 4.6455
cggaag cggaag|cttccg 0.0007798191331 0.0001504902423 915 176.58 0 0e+00 350.00 14 9 4575 55.57 176.578 5.1819
gcggga gcggga|tcccgc 0.0009485668799 0.0002158811052 1113 253.30 0 0e+00 350.00 15 5 5565 54.02 253.304 4.3939
ccccgg ccccgg|ccgggg 0.0010508382416 0.0002603748221 1233 305.51 0 0e+00 350.00 16 74 6165 53.06 305.511 4.0359
cgggcc cgggcc|ggcccg 0.0008923176310 0.0002010666628 1047 235.92 0 0e+00 350.00 17 70 5235 52.81 235.921 4.4379
cggccc cggccc|gggccg 0.0010090774356 0.0002476119423 1184 290.54 0 0e+00 350.00 18 15 5920 52.42 290.535 4.0752
ccggcg ccggcg|cgccgg 0.0007090814412 0.0001288516543 832 151.19 4e-323 8e-320 319.09 19 39 4160 55.37 151.188 5.5031
cgggga cgggga|tccccg 0.0009443055732 0.0002314945775 1108 271.62 6e-316 1e-312 311.89 20 5 5540 50.75 271.624 4.0792
agggcg agggcg|cgccct 0.0008301025526 0.0001917590465 974 225.00 4e-297 8e-294 293.11 21 2 4870 49.93 225.000 4.3289
ccgctc ccgctc|gagcgg 0.0007559558154 0.0001608344376 887 188.71 2e-295 4e-292 291.45 22 3 4435 50.83 188.715 4.7002
cccgga cccgga|tccggg 0.0007874894852 0.0001770237871 924 207.71 2e-290 4e-287 286.42 23 0 4620 49.70 207.711 4.4485
cgctcc cgctcc|ggagcg 0.0007968643600 0.0001836319787 935 215.46 4e-286 9e-283 282.06 24 11 4675 49.02 215.464 4.3395
cgcgga cgcgga|tccgcg 0.0005062432405 0.0000730923385 594 85.76 5e-281 1e-277 276.97 25 19 2970 54.88 85.763 6.9261
gcccgc gcccgc|gcgggc 0.0010499859803 0.0003088204967 1232 362.35 9e-280 2e-276 275.71 26 32 6160 45.69 362.354 3.4000
ccggaa ccggaa|ttccgg 0.0006349347040 0.0001197743889 745 140.54 1e-279 2e-276 275.63 27 32 3725 50.99 140.537 5.3011
cctcgc cctcgc|gcgagg 0.0007738533037 0.0001786434419 908 209.61 2e-277 5e-274 273.33 28 4 4540 48.24 209.611 4.3318
agcgcg agcgcg|cgcgct 0.0005377769104 0.0000870285682 631 102.11 7e-272 1e-268 267.85 29 31 3155 52.34 102.115 6.1793
cggagc cggagc|gctccg 0.0008113528030 0.0001993462294 952 233.90 5e-271 1e-267 267.02 30 9 4760 46.95 233.903 4.0701
ccgcgg ccgcgg|ccgcgg 0.0005284020355 0.0000858840122 620 100.77 3e-266 7e-263 262.16 31 0 3100 51.72 100.772 6.1525
ccggag ccggag|ctccgg 0.0007508422473 0.0001789817698 881 210.01 9e-260 2e-256 255.74 32 49 4405 46.30 210.008 4.1951
cgggac cgggac|gtcccg 0.0006332301813 0.0001293483484 743 151.77 3e-258 6e-255 254.24 33 4 3715 47.99 151.771 4.8955
agcggc agcggc|gccgct 0.0006741387260 0.0001478843978 791 173.52 2e-255 3e-252 251.46 34 2 3955 46.88 173.520 4.5586
cgcgcc cgcgcc|ggcgcg 0.0009093628579 0.0002595973878 1067 304.60 2e-252 4e-249 248.36 35 60 5335 43.68 304.598 3.5030
cgcgag cgcgag|ctcgcg 0.0004721527866 0.0000718973932 554 84.36 3e-251 5e-248 247.28 36 32 2770 51.13 84.361 6.5670
cgcagc cgcagc|gctgcg 0.0007602171221 0.0001903265518 892 223.32 1e-248 3e-245 244.59 37 7 4460 44.75 223.319 3.9943
ctccgc ctccgc|gcggag 0.0009860663792 0.0003026442131 1157 355.11 7e-248 1e-244 243.83 38 5 5785 42.55 355.107 3.2582
agccgc agccgc|gcggct 0.0007065246572 0.0001679969111 829 197.12 3e-245 6e-242 241.23 39 1 4145 45.01 197.119 4.2056
cccccg cccccg|cggggg 0.0009144764260 0.0002701647355 1073 317.00 2e-242 4e-239 238.42 40 4 5365 42.46 316.998 3.3849
agcgcc agcgcc|ggcgct 0.0006707296806 0.0001546365586 787 181.44 5e-241 1e-237 237.00 41 0 3935 44.96 181.443 4.3375
ccgcag ccgcag|ctgcgg 0.0007781146104 0.0002039676444 913 239.33 7e-241 1e-237 236.83 42 0 4565 43.55 239.325 3.8149
cagcgc cagcgc|gcgctg 0.0007099337026 0.0001728126847 833 202.77 5e-240 1e-236 235.95 43 42 4165 44.26 202.770 4.1081
cgtccc cgtccc|gggacg 0.0006485708856 0.0001464447046 761 171.83 2e-238 4e-235 234.42 44 2 3805 44.95 171.831 4.4288
gagcgc gagcgc|gcgctc 0.0006315256586 0.0001398653069 741 164.11 4e-237 9e-234 233.05 45 30 3705 45.03 164.111 4.5152
cacgcg cacgcg|cgcgtg 0.0004695960026 0.0000769723116 551 90.32 4e-235 8e-232 231.09 46 22 2755 48.48 90.315 6.1008
gcgccc gcgccc|gggcgc 0.0009664643682 0.0003078990931 1134 361.27 2e-230 5e-227 226.31 47 58 5670 40.65 361.273 3.1389
acgcgc acgcgc|gcgcgt 0.0004355055486 0.0000691763731 511 81.17 5e-224 9e-221 220.03 48 15 2555 47.71 81.168 6.2956
ctgcgc ctgcgc|gcgcag 0.0007380583271 0.0001970931097 866 231.26 2e-223 4e-220 219.41 49 55 4330 41.74 231.259 3.7447
agcggg agcggg|cccgct 0.0007005588278 0.0001793344946 822 210.42 2e-223 5e-220 219.32 50 0 4110 42.16 210.422 3.9064
; Host name rsat
; Job started 2026-07-10.105856
; Job done 2026-07-10.105857
; Seconds 0.7
; user 0.71
; system 0.01
; cuser 0.28
; csystem 0.02