position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title brac145 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 145 Sum of sequence lengths 104899 Min sequence length 0 Max sequence length 1000 Average sequence length 723 Possible positions 104899 Oligonucleotide statistics: Total occurrences 103155 Position interval parameters: Position interval 20 Number of windows 50 Total positions 104899 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 37 712 2 -24 [-479,-460] -469.5 44 837 3 -23 [-459,-440] -449.5 48 932 4 -22 [-439,-420] -429.5 54 1039 5 -21 [-419,-400] -409.5 65 1196 6 -20 [-399,-380] -389.5 74 1407 7 -19 [-379,-360] -369.5 77 1515 8 -18 [-359,-340] -349.5 84 1619 9 -17 [-339,-320] -329.5 87 1700 10 -16 [-319,-300] -309.5 95 1828 11 -15 [-299,-280] -289.5 101 1957 12 -14 [-279,-260] -269.5 107 2079 13 -13 [-259,-240] -249.5 118 2301 14 -12 [-239,-220] -229.5 124 2420 15 -11 [-219,-200] -209.5 128 2542 16 -10 [-199,-180] -189.5 135 2623 17 -9 [-179,-160] -169.5 140 2719 18 -8 [-159,-140] -149.5 141 2814 19 -7 [-139,-120] -129.5 145 2856 20 -6 [-119,-100] -109.5 145 2900 21 -5 [-99,-80] -89.5 145 2900 22 -4 [-79,-60] -69.5 145 2900 23 -3 [-59,-40] -49.5 145 2900 24 -2 [-39,-20] -29.5 145 2900 25 -1 [-19,0] -9.5 145 2900 26 0 [1,20] 10.5 145 2900 27 1 [21,40] 30.5 145 2900 28 2 [41,60] 50.5 145 2900 29 3 [61,80] 70.5 145 2900 30 4 [81,100] 90.5 145 2900 31 5 [101,120] 110.5 145 2900 32 6 [121,140] 130.5 145 2851 33 7 [141,160] 150.5 141 2813 34 8 [161,180] 170.5 140 2714 35 9 [181,200] 190.5 135 2617 36 10 [201,220] 210.5 128 2539 37 11 [221,240] 230.5 123 2414 38 12 [241,260] 250.5 117 2289 39 13 [261,280] 270.5 107 2075 40 14 [281,300] 290.5 100 1952 41 15 [301,320] 310.5 95 1824 42 16 [321,340] 330.5 87 1699 43 17 [341,360] 350.5 84 1613 44 18 [361,380] 370.5 76 1510 45 19 [381,400] 390.5 74 1402 46 20 [401,420] 410.5 65 1187 47 21 [421,440] 430.5 54 1035 48 22 [441,460] 450.5 48 929 49 23 [461,480] 470.5 44 832 50 24 [481,500] 490.5 37 708 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a | a | 25889 | 46.5 | 49 | 5.7e-01 | 2.3 | -0.36 | 1 | 187 | 236 | 255 | 248 | 302 | 366 | 395 | 412 | 397 | 440 | 522 | 546 | 541 | 604 | 656 | 643 | 643 | 673 | 706 | 711 | 699 | 649 | 743 | 702 | 717 | 722 | 711 | 723 | 717 | 664 | 694 | 709 | 700 | 706 | 648 | 621 | 583 | 538 | 520 | 474 | 457 | 417 | 392 | 382 | 347 | 335 | 251 | 212 | 197 | 176 |
| g | g | 25855 | 44.7 | 49 | 6.5e-01 | 2.6 | -0.41 | 2 | 187 | 220 | 189 | 270 | 317 | 364 | 365 | 429 | 397 | 478 | 480 | 501 | 573 | 584 | 610 | 662 | 686 | 706 | 723 | 753 | 742 | 711 | 714 | 749 | 687 | 713 | 688 | 691 | 700 | 744 | 723 | 684 | 685 | 628 | 636 | 634 | 586 | 547 | 480 | 495 | 454 | 437 | 408 | 367 | 342 | 248 | 257 | 232 | 215 | 164 |
| t | t | 25360 | 43.6 | 49 | 6.9e-01 | 2.8 | -0.44 | 3 | 168 | 204 | 235 | 264 | 283 | 325 | 367 | 404 | 473 | 427 | 475 | 524 | 589 | 577 | 636 | 637 | 680 | 652 | 667 | 672 | 663 | 720 | 681 | 696 | 717 | 728 | 749 | 680 | 645 | 724 | 675 | 659 | 641 | 661 | 608 | 591 | 612 | 565 | 516 | 470 | 437 | 419 | 395 | 358 | 345 | 277 | 253 | 231 | 206 | 179 |
| c | c | 26051 | 40.6 | 49 | 8.0e-01 | 3.2 | -0.50 | 4 | 170 | 177 | 253 | 257 | 294 | 352 | 388 | 374 | 433 | 483 | 480 | 508 | 598 | 655 | 622 | 637 | 650 | 716 | 713 | 710 | 716 | 739 | 695 | 712 | 739 | 685 | 692 | 734 | 778 | 695 | 720 | 717 | 719 | 642 | 679 | 653 | 593 | 582 | 519 | 475 | 442 | 403 | 392 | 383 | 330 | 287 | 248 | 249 | 194 | 169 |
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