/var/www/html/rsat/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title brac145 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	145
	Sum of sequence lengths      	104899
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	723
	Possible positions           	104754
 Oligonucleotide statistics:
	Total occurrences    	102992
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	104754
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	37	712
	2	-24	[-479,-460]	-469.5	44	837
	3	-23	[-459,-440]	-449.5	48	932
	4	-22	[-439,-420]	-429.5	54	1039
	5	-21	[-419,-400]	-409.5	65	1196
	6	-20	[-399,-380]	-389.5	74	1407
	7	-19	[-379,-360]	-369.5	77	1515
	8	-18	[-359,-340]	-349.5	84	1619
	9	-17	[-339,-320]	-329.5	87	1700
	10	-16	[-319,-300]	-309.5	95	1828
	11	-15	[-299,-280]	-289.5	101	1957
	12	-14	[-279,-260]	-269.5	107	2079
	13	-13	[-259,-240]	-249.5	118	2301
	14	-12	[-239,-220]	-229.5	124	2420
	15	-11	[-219,-200]	-209.5	128	2542
	16	-10	[-199,-180]	-189.5	135	2623
	17	-9	[-179,-160]	-169.5	140	2719
	18	-8	[-159,-140]	-149.5	141	2814
	19	-7	[-139,-120]	-129.5	145	2856
	20	-6	[-119,-100]	-109.5	145	2900
	21	-5	[-99,-80]	-89.5	145	2900
	22	-4	[-79,-60]	-69.5	145	2900
	23	-3	[-59,-40]	-49.5	145	2900
	24	-2	[-39,-20]	-29.5	145	2900
	25	-1	[-19,0]	-9.5	145	2900
	26	0	[1,20]	10.5	145	2900
	27	1	[21,40]	30.5	145	2900
	28	2	[41,60]	50.5	145	2900
	29	3	[61,80]	70.5	145	2900
	30	4	[81,100]	90.5	145	2900
	31	5	[101,120]	110.5	145	2900
	32	6	[121,140]	130.5	144	2847
	33	7	[141,160]	150.5	141	2812
	34	8	[161,180]	170.5	139	2709
	35	9	[181,200]	190.5	135	2610
	36	10	[201,220]	210.5	128	2534
	37	11	[221,240]	230.5	123	2408
	38	12	[241,260]	250.5	117	2279
	39	13	[261,280]	270.5	106	2068
	40	14	[281,300]	290.5	99	1947
	41	15	[301,320]	310.5	95	1816
	42	16	[321,340]	330.5	86	1696
	43	17	[341,360]	350.5	84	1605
	44	18	[361,380]	370.5	76	1508
	45	19	[381,400]	390.5	74	1393
	46	20	[401,420]	410.5	65	1176
	47	21	[421,440]	430.5	54	1029
	48	22	[441,460]	450.5	48	925
	49	23	[461,480]	470.5	44	825
	50	24	[481,500]	490.5	37	671

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
cc cc 5398 92.7 49 1.6e-04 0.0026 2.59 1 31 30 59 60 58 63 79 72 97 124 94 102 135 153 131 103 129 149 152 145 153 155 142 155 161 139 129 158 199 116 136 157 141 109 162 136 118 118 114 99 92 73 90 82 73 56 53 54 36 26
aa aa 6459 72.3 49 1.7e-02 0.27 0.57 2 34 63 77 58 72 83 87 105 98 98 139 139 126 158 179 149 155 161 167 173 170 156 186 171 183 199 169 172 174 153 159 199 169 198 190 166 157 132 129 117 119 91 93 100 98 93 57 48 42 48
ga ga 6323 72.0 49 1.8e-02 0.28 0.55 3 61 73 52 75 85 87 99 101 88 126 123 131 127 118 147 154 159 173 176 180 188 148 182 186 178 174 173 167 192 189 167 159 169 161 152 154 122 104 121 119 108 128 105 93 85 64 73 43 50 34
tt tt 6196 66.9 49 4.5e-02 0.72 0.14 4 29 60 52 72 80 70 93 86 117 101 109 139 156 136 167 143 151 154 154 164 170 189 169 160 178 189 196 154 140 190 155 180 138 171 136 155 164 142 130 103 91 97 104 88 82 79 67 52 51 43
gt gt 6720 58.3 49 1.7e-01 2.7 -0.43 5 53 55 50 68 72 89 85 122 121 117 129 107 149 146 169 182 209 180 184 175 151 199 186 214 174 198 183 179 166 200 183 155 170 171 160 160 175 159 129 116 119 127 105 101 93 58 67 63 52 45
gg gg 5471 57.7 49 1.8e-01 3 -0.47 6 38 37 31 54 66 79 84 98 79 94 102 103 128 121 133 145 138 148 162 186 188 144 148 148 138 144 149 143 150 154 164 155 158 106 126 140 121 121 108 117 103 76 85 62 74 48 52 48 41 34
tg tg 8302 57.5 49 1.9e-01 3 -0.48 7 57 75 62 95 87 115 108 139 164 147 175 179 188 199 204 224 239 222 228 229 235 225 221 233 226 233 236 219 206 230 207 200 197 207 197 189 192 176 146 163 165 141 143 122 115 61 82 84 68 47
tc tc 6454 50.5 49 4.2e-01 6.6 -0.82 8 46 37 74 65 62 80 92 100 128 101 102 113 142 147 141 166 179 169 177 148 158 185 169 183 194 178 190 179 185 205 186 177 187 167 165 155 150 149 146 117 99 110 87 88 87 77 65 59 42 46
ag ag 6622 50.4 49 4.2e-01 6.7 -0.83 9 50 63 56 72 85 98 104 117 88 135 111 124 144 138 142 178 176 168 192 182 178 167 194 197 177 189 159 163 189 190 207 185 185 181 151 159 136 129 129 126 105 126 93 98 85 85 63 48 58 47
at at 5909 47.0 49 5.5e-01 8.8 -0.95 10 46 54 64 55 66 78 89 96 106 89 119 145 128 135 151 140 142 153 160 158 159 151 171 165 163 170 190 189 153 150 144 148 148 156 143 119 126 123 128 108 103 80 98 85 90 74 63 59 46 33
gc gc 7295 44.6 49 6.5e-01 10 -1.02 11 35 55 56 73 94 109 97 108 109 141 126 160 169 199 160 181 180 205 201 212 215 220 198 201 197 196 183 201 192 201 209 214 187 189 195 179 166 159 121 142 122 106 107 111 88 76 62 77 69 42
ct ct 6493 44.2 49 6.7e-01 11 -1.03 12 38 38 71 66 68 91 91 103 127 118 122 125 160 154 153 169 173 178 166 167 193 189 149 166 192 165 174 161 191 183 193 178 174 169 172 152 152 139 120 137 127 105 94 85 76 66 50 59 56 48
ta ta 4365 42.8 49 7.2e-01 12 -1.06 13 36 32 47 32 54 60 74 79 64 78 89 93 103 95 123 104 111 105 108 130 100 120 122 120 119 127 127 128 114 97 127 100 119 115 110 91 105 98 93 85 79 70 60 59 56 55 39 34 45 34
ca ca 8701 40.2 49 8.1e-01 13 -1.11 14 57 66 83 76 97 123 152 121 140 146 167 189 182 229 214 237 213 233 253 242 226 228 253 223 233 232 242 256 229 227 248 239 258 213 201 209 194 201 188 143 148 129 126 132 115 109 82 86 61 50
cg cg 5420 38.8 49 8.5e-01 14 -1.13 15 44 43 40 55 71 75 66 78 69 95 97 92 121 119 124 128 135 156 142 155 144 167 151 168 153 149 147 159 159 169 143 143 145 149 140 154 128 121 95 95 75 95 81 84 65 55 61 50 38 32
ac ac 6864 38.7 49 8.5e-01 14 -1.14 16 57 56 58 63 79 107 115 94 105 118 153 138 143 173 184 176 170 191 187 198 192 175 192 169 194 164 193 199 201 171 183 176 198 170 164 176 162 150 131 122 126 119 107 98 72 80 67 55 50 43 
 Host name	rsat
 Job started	2026-07-17.073711
 Job done	2026-07-17.073712
 Seconds	0.68
	user	0.68
	system	0.03
	cuser	0
;	csystem	0