compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant Program version 1.118 Quick mode Input files file1 $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2.tf file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt Output files match_table_html $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html alignments_1ton_html $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html prefix $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant html_index $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html alignments_1ton $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab match_table_txt $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab Matrices file1 1 matrices $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2.tf file1 1 10 116 file2 879 matrices $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt file2 1 6 20 file2 2 14 43 file2 3 10 25 file2 4 15 10 file2 5 10 17 file2 6 10 18 file2 7 17 25 file2 8 15 33 file2 9 14 16 file2 10 6 16 file2 11 15 1369 ... 869 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| oligos_6nt_mkv3_m2 | MA0694.2 | oligos_6nt_mkv3_m2 | ZBTB7B | 0.855 | 0.855 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv3_m2 | MA1990.2 | oligos_6nt_mkv3_m2 | Gli1 | 0.791 | 0.791 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv3_m2 | MA0695.2 | oligos_6nt_mkv3_m2 | ZBTB7C | 0.925 | 0.740 | 10 | 8 | 8 | 10 | 0.8000 | 0.8000 | 1.0000 | D | 0 |
| oligos_6nt_mkv3_m2 | MA0734.4 | oligos_6nt_mkv3_m2 | Gli2 | 0.803 | 0.722 | 10 | 9 | 9 | 10 | 0.9000 | 0.9000 | 1.0000 | D | 1 |
| oligos_6nt_mkv3_m2 | MA1491.3 | oligos_6nt_mkv3_m2 | GLI3 | 0.782 | 0.522 | 10 | 15 | 10 | 15 | 0.6667 | 1.0000 | 0.6667 | D | 0 |
| oligos_6nt_mkv3_m2 | MA0103.4 | oligos_6nt_mkv3_m2 | ZEB1 | 0.818 | 0.491 | 10 | 6 | 6 | 10 | 0.6000 | 0.6000 | 1.0000 | D | 4 |
| oligos_6nt_mkv3_m2 | MA0130.1 | oligos_6nt_mkv3_m2 | ZNF354C | 0.808 | 0.485 | 10 | 6 | 6 | 10 | 0.6000 | 0.6000 | 1.0000 | D | 1 |
| oligos_6nt_mkv3_m2 | MA0820.2 | oligos_6nt_mkv3_m2 | FIGLA | 0.776 | 0.466 | 10 | 6 | 6 | 10 | 0.6000 | 0.6000 | 1.0000 | D | 4 |
| oligos_6nt_mkv3_m2 | MA0522.4 | oligos_6nt_mkv3_m2 | TCF3 | 0.817 | 0.446 | 10 | 7 | 6 | 11 | 0.5455 | 0.6000 | 0.8571 | D | 4 |
| oligos_6nt_mkv3_m2 | MA1648.2 | oligos_6nt_mkv3_m2 | TCF12 | 0.816 | 0.445 | 10 | 7 | 6 | 11 | 0.5455 | 0.6000 | 0.8571 | D | 4 |
| oligos_6nt_mkv3_m2 | MA1558.2 | oligos_6nt_mkv3_m2 | SNAI1 | 0.813 | 0.444 | 10 | 7 | 6 | 11 | 0.5455 | 0.6000 | 0.8571 | R | 4 |
| oligos_6nt_mkv3_m2 | MA0751.2 | oligos_6nt_mkv3_m2 | ZIC4 | 0.714 | 0.428 | 10 | 14 | 9 | 15 | 0.6000 | 0.9000 | 0.6429 | D | 1 |
| oligos_6nt_mkv3_m2 | MA2324.1 | oligos_6nt_mkv3_m2 | BCL11A | 0.753 | 0.411 | 10 | 7 | 6 | 11 | 0.5455 | 0.6000 | 0.8571 | D | -1 |
Host name rsat Job started 2026-07-17.073815 Job done 2026-07-17.073820 Seconds 1.08 user 1.08 system 0.24 cuser 3.9 ; csystem 0.42