One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m2_shift1 ; 14 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_6nt_mkv3_m2_shift1 (oligos_6nt_mkv3_m2)     
; oligos_6nt_mkv3_m2; m=0 (reference); ncol1=10; shift=1; ncol=11; -mcACCACCas
; Alignment reference
a	0	29	19	116	0	0	105	0	0	36	27
c	0	40	47	0	116	108	3	116	116	28	30
g	0	28	25	0	0	3	3	0	0	26	32
t	0	19	25	0	0	5	5	0	0	26	27
MA0694.2_shift1 (ZBTB7B) 
; oligos_6nt_mkv3_m2 versus MA0694.2 (ZBTB7B); m=1/13; ncol2=10; w=0; offset=0; strand=D; shift=1; score=0.854728; -CGACCMCCga
; cor=; Ncor=
a	0	144.0	394.0	1852.0	5.0	0.0	1852.0	5.0	0.0	803.0	1852.0
c	0	1852.0	19.0	238.0	1852.0	1852.0	820.0	1852.0	1852.0	474.0	295.0
g	0	224.0	1852.0	0.0	1.0	2.0	2.0	0.0	0.0	1852.0	221.0
t	0	54.0	78.0	3.0	0.0	0.0	3.0	1.0	7.0	305.0	365.0
MA1990.2_shift1 (Gli1) 
; oligos_6nt_mkv3_m2 versus MA1990.2 (Gli1); m=2/13; ncol2=10; w=0; offset=0; strand=D; shift=1; score=0.790785; -rGACCACCCA
; cor=; Ncor=
a	0	2124.0	113.0	3120.0	100.0	71.0	3653.0	38.0	559.0	153.0	3312.0
c	0	299.0	193.0	331.0	3744.0	3809.0	73.0	3827.0	3231.0	3566.0	188.0
g	0	1104.0	3535.0	498.0	88.0	74.0	87.0	75.0	145.0	110.0	251.0
t	0	476.0	162.0	54.0	71.0	49.0	190.0	63.0	68.0	174.0	252.0
MA0695.2_shift1 (ZBTB7C) 
; oligos_6nt_mkv3_m2 versus MA0695.2 (ZBTB7C); m=3/13; ncol2=8; w=0; offset=0; strand=D; shift=1; score=0.740338; -cgACCACC--
; cor=; Ncor=
a	0	183.0	351.0	1018.0	39.0	0.0	1018.0	18.0	90.0	0	0
c	0	1018.0	128.0	225.0	1018.0	1018.0	269.0	1018.0	1018.0	0	0
g	0	215.0	1018.0	8.0	0.0	5.0	8.0	7.0	54.0	0	0
t	0	110.0	137.0	24.0	0.0	14.0	10.0	17.0	90.0	0	0
MA0734.4_shift2 (Gli2) 
; oligos_6nt_mkv3_m2 versus MA0734.4 (Gli2); m=4/13; ncol2=9; w=0; offset=1; strand=D; shift=2; score=0.722435; --GACCACCCA
; cor=; Ncor=
a	0	0	60.0	1920.0	44.0	8.0	2216.0	9.0	313.0	59.0	2101.0
c	0	0	96.0	227.0	2404.0	2464.0	40.0	2451.0	2145.0	2288.0	85.0
g	0	0	2251.0	337.0	27.0	13.0	82.0	12.0	20.0	77.0	193.0
t	0	0	85.0	8.0	17.0	7.0	154.0	20.0	14.0	68.0	113.0
MA1491.3_shift1 (GLI3) 
; oligos_6nt_mkv3_m2 versus MA1491.3 (GLI3); m=5/13; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.521632; -rGACCACCCA
; cor=; Ncor=
a	0	4051.0	9.0	8515.0	4.0	1.0	8515.0	1.0	727.0	29.0	8515.0
c	0	1748.0	3.0	365.0	8515.0	8515.0	236.0	8515.0	7788.0	8515.0	2.0
g	0	4464.0	8515.0	376.0	0.0	1.0	9.0	0.0	1.0	1.0	53.0
t	0	403.0	96.0	1.0	0.0	1.0	88.0	1.0	1.0	17.0	2.0
MA0103.4_shift5 (ZEB1) 
; oligos_6nt_mkv3_m2 versus MA0103.4 (ZEB1); m=6/13; ncol2=6; w=0; offset=4; strand=D; shift=5; score=0.490629; -----CACCTG
; cor=; Ncor=
a	0	0	0	0	0	114.0	19905.0	32.0	193.0	4.0	441.0
c	0	0	0	0	0	19195.0	0.0	19878.0	19257.0	501.0	178.0
g	0	0	0	0	0	158.0	223.0	97.0	649.0	355.0	19381.0
t	0	0	0	0	0	662.0	1.0	122.0	30.0	19269.0	129.0
MA0130.1_shift2 (ZNF354C) 
; oligos_6nt_mkv3_m2 versus MA0130.1 (ZNF354C); m=7/13; ncol2=6; w=0; offset=1; strand=D; shift=2; score=0.484757; --mTCCAC---
; cor=; Ncor=
a	0	0	7.0	3.0	0.0	0.0	16.0	0.0	0	0	0
c	0	0	6.0	2.0	16.0	16.0	0.0	15.0	0	0	0
g	0	0	3.0	0.0	0.0	0.0	0.0	1.0	0	0	0
t	0	0	0.0	11.0	0.0	0.0	0.0	0.0	0	0	0
MA0820.2_shift5 (FIGLA) 
; oligos_6nt_mkv3_m2 versus MA0820.2 (FIGLA); m=8/13; ncol2=6; w=0; offset=4; strand=D; shift=5; score=0.465542; -----CACCTG
; cor=; Ncor=
a	0	0	0	0	0	0.0	1780.0	0.0	9.0	56.0	36.0
c	0	0	0	0	0	1780.0	46.0	1780.0	1780.0	0.0	33.0
g	0	0	0	0	0	0.0	0.0	527.0	311.0	17.0	1780.0
t	0	0	0	0	0	29.0	14.0	0.0	0.0	1780.0	65.0
MA0522.4_shift5 (TCF3) 
; oligos_6nt_mkv3_m2 versus MA0522.4 (TCF3); m=9/13; ncol2=7; w=0; offset=4; strand=D; shift=5; score=0.445613; -----CACCTG
; cor=; Ncor=
a	0	0	0	0	0	469.0	28916.0	309.0	1127.0	380.0	1089.0
c	0	0	0	0	0	29379.0	396.0	28640.0	27199.0	2003.0	1038.0
g	0	0	0	0	0	708.0	1574.0	1362.0	2652.0	1339.0	28642.0
t	0	0	0	0	0	705.0	375.0	950.0	283.0	27539.0	492.0
MA1648.2_shift5 (TCF12) 
; oligos_6nt_mkv3_m2 versus MA1648.2 (TCF12); m=10/13; ncol2=7; w=0; offset=4; strand=D; shift=5; score=0.44532; -----CACCTG
; cor=; Ncor=
a	0	0	0	0	0	955.0	52529.0	744.0	1913.0	1380.0	2819.0
c	0	0	0	0	0	57848.0	2007.0	55598.0	55765.0	3886.0	2088.0
g	0	0	0	0	0	1186.0	5607.0	3780.0	3536.0	2625.0	55922.0
t	0	0	0	0	0	1887.0	1733.0	1754.0	662.0	53985.0	1047.0
MA1558.2_rc_shift5 (SNAI1_rc) 
; oligos_6nt_mkv3_m2 versus MA1558.2_rc (SNAI1_rc); m=11/13; ncol2=7; w=0; offset=4; strand=R; shift=5; score=0.443624; -----CACCTG
; cor=; Ncor=
a	0	0	0	0	0	311.0	19982.0	28.0	306.0	568.0	340.0
c	0	0	0	0	0	19982.0	42.0	19982.0	19982.0	91.0	275.0
g	0	0	0	0	0	0.0	0.0	5.0	517.0	297.0	19982.0
t	0	0	0	0	0	706.0	38.0	72.0	1766.0	19982.0	446.0
MA0751.2_shift2 (ZIC4) 
; oligos_6nt_mkv3_m2 versus MA0751.2 (ZIC4); m=12/13; ncol2=14; w=0; offset=1; strand=D; shift=2; score=0.428353; --krCCCCCyG
; cor=; Ncor=
a	0	0	578.0	3013.0	315.0	209.0	614.0	8.0	114.0	24.0	1095.0
c	0	0	934.0	812.0	2870.0	2890.0	2757.0	2999.0	2985.0	2222.0	68.0
g	0	0	4126.0	1553.0	52.0	121.0	225.0	0.0	0.0	6.0	4795.0
t	0	0	1887.0	21.0	98.0	147.0	275.0	1.0	11.0	1078.0	69.0
MA2324.1_shift0 (BCL11A) 
; oligos_6nt_mkv3_m2 versus MA2324.1 (BCL11A); m=13/13; ncol2=7; w=-1; offset=-1; strand=D; shift=0; score=0.410922; CTGACCA----
; cor=; Ncor=
a	343.0	180.0	125.0	5724.0	155.0	143.0	4495.0	0	0	0	0
c	5024.0	120.0	281.0	92.0	5855.0	5964.0	641.0	0	0	0	0
g	591.0	165.0	5747.0	100.0	141.0	55.0	385.0	0	0	0	0
t	307.0	5800.0	112.0	349.0	114.0	103.0	744.0	0	0	0	0