One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/results/discovered_motifs/oligos_6nt_mkv3_m3/peak-motifs_oligos_6nt_mkv3_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/results/discovered_motifs/oligos_6nt_mkv3_m3/peak-motifs_oligos_6nt_mkv3_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m3_shift7 ; 12 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m3_shift7 (oligos_6nt_mkv3_m3)
; oligos_6nt_mkv3_m3; m=0 (reference); ncol1=10; shift=7; ncol=17; -------rvAGAAAGrr ; Alignment reference a 0 0 0 0 0 0 0 42 29 107 0 108 101 107 0 33 38 c 0 0 0 0 0 0 0 20 27 0 0 0 0 0 0 25 23 g 0 0 0 0 0 0 0 27 34 1 107 0 0 1 105 29 35 t 0 0 0 0 0 0 0 19 18 0 1 0 7 0 3 21 12

MA0508.4_rc_shift8 (PRDM1_rc)
; oligos_6nt_mkv3_m3 versus MA0508.4_rc (PRDM1_rc); m=1/11; ncol2=7; w=0; offset=1; strand=R; shift=8; score=0.654028; --------GAGAAAG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 660.0 49466.0 432.0 52619.0 50943.0 52905.0 829.0 0 0 c 0 0 0 0 0 0 0 0 290.0 1390.0 207.0 561.0 1011.0 826.0 701.0 0 0 g 0 0 0 0 0 0 0 0 52821.0 1076.0 53465.0 488.0 1346.0 467.0 52752.0 0 0 t 0 0 0 0 0 0 0 0 1710.0 3549.0 1377.0 1813.0 2181.0 1283.0 1199.0 0 0

MA2120.1_shift8 (ZNF184)
; oligos_6nt_mkv3_m3 versus MA2120.1 (ZNF184); m=2/11; ncol2=13; w=0; offset=1; strand=D; shift=8; score=0.585529; --------kaGAAAGrk ; cor=; Ncor= a 0 0 0 0 0 0 0 0 34.0 659.0 107.0 992.0 971.0 794.0 44.0 305.0 169.0 c 0 0 0 0 0 0 0 0 3.0 107.0 3.0 3.0 3.0 3.0 13.0 34.0 242.0 g 0 0 0 0 0 0 0 0 326.0 169.0 888.0 3.0 23.0 190.0 909.0 419.0 273.0 t 0 0 0 0 0 0 0 0 638.0 65.0 3.0 3.0 3.0 13.0 34.0 242.0 315.0

MA0869.3_shift7 (Sox11)
; oligos_6nt_mkv3_m3 versus MA0869.3 (Sox11); m=3/11; ncol2=8; w=0; offset=0; strand=D; shift=7; score=0.574354; -------GAACAAAG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1014.0 7912.0 9856.0 119.0 10020.0 9676.0 9276.0 506.0 0 0 c 0 0 0 0 0 0 0 764.0 766.0 100.0 9471.0 108.0 264.0 61.0 148.0 0 0 g 0 0 0 0 0 0 0 8063.0 1298.0 211.0 501.0 49.0 248.0 233.0 9486.0 0 0 t 0 0 0 0 0 0 0 407.0 272.0 81.0 157.0 71.0 60.0 678.0 108.0 0 0

MA0136.4_shift8 (Elf5)
; oligos_6nt_mkv3_m3 versus MA0136.4 (Elf5); m=4/11; ncol2=8; w=0; offset=1; strand=D; shift=8; score=0.57139; --------AAGGAAGT- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 29427.0 38778.0 512.0 587.0 40896.0 40552.0 2609.0 5180.0 0 c 0 0 0 0 0 0 0 0 6065.0 978.0 182.0 510.0 580.0 389.0 1234.0 3355.0 0 g 0 0 0 0 0 0 0 0 5204.0 2049.0 41025.0 40626.0 390.0 481.0 37803.0 4948.0 0 t 0 0 0 0 0 0 0 0 1450.0 341.0 427.0 423.0 280.0 724.0 500.0 28663.0 0

MA0867.3_shift8 (SOX4)
; oligos_6nt_mkv3_m3 versus MA0867.3 (SOX4); m=5/11; ncol2=8; w=0; offset=1; strand=D; shift=8; score=0.564046; --------aACAAwGr- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 5582.0 5582.0 0.0 5582.0 5582.0 5582.0 1018.0 2093.0 0 c 0 0 0 0 0 0 0 0 951.0 0.0 5582.0 1.0 6.0 120.0 64.0 1422.0 0 g 0 0 0 0 0 0 0 0 2047.0 0.0 37.0 6.0 11.0 50.0 5582.0 3489.0 0 t 0 0 0 0 0 0 0 0 431.0 9.0 33.0 0.0 0.0 2719.0 83.0 174.0 0

MA1709.2_shift5 (ZIM3)
; oligos_6nt_mkv3_m3 versus MA1709.2 (ZIM3); m=6/11; ncol2=11; w=-2; offset=-2; strand=D; shift=5; score=0.552566; -----mAACAGAAAcC- ; cor=; Ncor= a 0 0 0 0 0 5336.0 16896.0 16502.0 853.0 17067.0 194.0 15879.0 16933.0 14228.0 2482.0 1365.0 0 c 0 0 0 0 0 8338.0 118.0 107.0 15856.0 38.0 72.0 840.0 90.0 306.0 7474.0 15232.0 0 g 0 0 0 0 0 1327.0 106.0 229.0 435.0 39.0 16877.0 165.0 110.0 575.0 3674.0 109.0 0 t 0 0 0 0 0 2219.0 100.0 382.0 76.0 76.0 77.0 336.0 87.0 2111.0 3590.0 514.0 0

MA1623.2_shift4 (Stat2)
; oligos_6nt_mkv3_m3 versus MA1623.2 (Stat2); m=7/11; ncol2=10; w=-3; offset=-3; strand=D; shift=4; score=0.479002; ----gAAACAGAAA--- ; cor=; Ncor= a 0 0 0 0 969.0 3554.0 3736.0 3738.0 286.0 3146.0 152.0 3700.0 3747.0 3514.0 0 0 0 c 0 0 0 0 306.0 76.0 75.0 72.0 2907.0 151.0 45.0 49.0 45.0 147.0 0 0 0 g 0 0 0 0 2287.0 168.0 71.0 87.0 524.0 74.0 3707.0 163.0 98.0 157.0 0 0 0 t 0 0 0 0 397.0 161.0 77.0 62.0 242.0 588.0 55.0 47.0 69.0 141.0 0 0 0

MA0442.3_shift9 (SOX10)
; oligos_6nt_mkv3_m3 versus MA0442.3 (SOX10); m=8/11; ncol2=6; w=0; offset=2; strand=D; shift=9; score=0.463911; ---------ACAAAG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 2023.0 3.0 2029.0 1968.0 1959.0 10.0 0 0 c 0 0 0 0 0 0 0 0 0 4.0 1989.0 7.0 28.0 23.0 13.0 0 0 g 0 0 0 0 0 0 0 0 0 3.0 11.0 7.0 20.0 12.0 2012.0 0 0 t 0 0 0 0 0 0 0 0 0 25.0 52.0 12.0 39.0 61.0 20.0 0 0

MA2326.1_shift9 (IKZF2)
; oligos_6nt_mkv3_m3 versus MA2326.1 (IKZF2); m=9/11; ncol2=6; w=0; offset=2; strand=D; shift=9; score=0.461258; ---------AGGAAG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 11101.0 2.0 5.0 11264.0 11159.0 21.0 0 0 c 0 0 0 0 0 0 0 0 0 208.0 127.0 7.0 25.0 191.0 57.0 0 0 g 0 0 0 0 0 0 0 0 0 79.0 11244.0 11270.0 17.0 26.0 11273.0 0 0 t 0 0 0 0 0 0 0 0 0 6.0 21.0 112.0 88.0 18.0 43.0 0 0

MA0731.1_rc_shift0 (BCL6B_rc)
; oligos_6nt_mkv3_m3 versus MA0731.1_rc (BCL6B_rc); m=10/11; ncol2=17; w=-7; offset=-7; strand=R; shift=0; score=0.440193; kkAATTCCTAGAAAGCA ; cor=; Ncor= a 0.0 0.0 211.0 215.0 0.0 0.0 0.0 0.0 0.0 214.0 0.0 212.0 213.0 212.0 2.0 1.0 207.0 c 7.0 9.0 0.0 0.0 0.0 2.0 171.0 173.0 0.0 34.0 0.0 2.0 0.0 0.0 0.0 186.0 0.0 g 146.0 243.0 16.0 2.0 0.0 0.0 0.0 0.0 0.0 12.0 384.0 0.0 0.0 0.0 367.0 0.0 19.0 t 183.0 113.0 0.0 0.0 290.0 289.0 0.0 0.0 280.0 0.0 0.0 0.0 0.0 0.0 0.0 3.0 0.0

MA1625.2_shift4 (Stat5b)
; oligos_6nt_mkv3_m3 versus MA1625.2 (Stat5b); m=11/11; ncol2=9; w=-3; offset=-3; strand=D; shift=4; score=0.400753; ----TTCCcAGAA---- ; cor=; Ncor= a 0 0 0 0 51.0 92.0 32.0 74.0 462.0 2474.0 10.0 2554.0 2664.0 0 0 0 0 c 0 0 0 0 54.0 34.0 2666.0 2176.0 1746.0 60.0 16.0 35.0 25.0 0 0 0 0 g 0 0 0 0 51.0 34.0 23.0 43.0 127.0 150.0 2717.0 86.0 50.0 0 0 0 0 t 0 0 0 0 2604.0 2600.0 39.0 467.0 425.0 76.0 17.0 85.0 21.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m3_shift7 (oligos_6nt_mkv3_m3)				; oligos_6nt_mkv3_m3; m=0 (reference); ncol1=10; shift=7; ncol=17; -------rvAGAAAGrr ; Alignment reference a 0 0 0 0 0 0 0 42 29 107 0 108 101 107 0 33 38 c 0 0 0 0 0 0 0 20 27 0 0 0 0 0 0 25 23 g 0 0 0 0 0 0 0 27 34 1 107 0 0 1 105 29 35 t 0 0 0 0 0 0 0 19 18 0 1 0 7 0 3 21 12
MA0508.4_rc_shift8 (PRDM1_rc)				; oligos_6nt_mkv3_m3 versus MA0508.4_rc (PRDM1_rc); m=1/11; ncol2=7; w=0; offset=1; strand=R; shift=8; score=0.654028; --------GAGAAAG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 660.0 49466.0 432.0 52619.0 50943.0 52905.0 829.0 0 0 c 0 0 0 0 0 0 0 0 290.0 1390.0 207.0 561.0 1011.0 826.0 701.0 0 0 g 0 0 0 0 0 0 0 0 52821.0 1076.0 53465.0 488.0 1346.0 467.0 52752.0 0 0 t 0 0 0 0 0 0 0 0 1710.0 3549.0 1377.0 1813.0 2181.0 1283.0 1199.0 0 0
MA2120.1_shift8 (ZNF184)				; oligos_6nt_mkv3_m3 versus MA2120.1 (ZNF184); m=2/11; ncol2=13; w=0; offset=1; strand=D; shift=8; score=0.585529; --------kaGAAAGrk ; cor=; Ncor= a 0 0 0 0 0 0 0 0 34.0 659.0 107.0 992.0 971.0 794.0 44.0 305.0 169.0 c 0 0 0 0 0 0 0 0 3.0 107.0 3.0 3.0 3.0 3.0 13.0 34.0 242.0 g 0 0 0 0 0 0 0 0 326.0 169.0 888.0 3.0 23.0 190.0 909.0 419.0 273.0 t 0 0 0 0 0 0 0 0 638.0 65.0 3.0 3.0 3.0 13.0 34.0 242.0 315.0
MA0869.3_shift7 (Sox11)				; oligos_6nt_mkv3_m3 versus MA0869.3 (Sox11); m=3/11; ncol2=8; w=0; offset=0; strand=D; shift=7; score=0.574354; -------GAACAAAG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1014.0 7912.0 9856.0 119.0 10020.0 9676.0 9276.0 506.0 0 0 c 0 0 0 0 0 0 0 764.0 766.0 100.0 9471.0 108.0 264.0 61.0 148.0 0 0 g 0 0 0 0 0 0 0 8063.0 1298.0 211.0 501.0 49.0 248.0 233.0 9486.0 0 0 t 0 0 0 0 0 0 0 407.0 272.0 81.0 157.0 71.0 60.0 678.0 108.0 0 0
MA0136.4_shift8 (Elf5)				; oligos_6nt_mkv3_m3 versus MA0136.4 (Elf5); m=4/11; ncol2=8; w=0; offset=1; strand=D; shift=8; score=0.57139; --------AAGGAAGT- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 29427.0 38778.0 512.0 587.0 40896.0 40552.0 2609.0 5180.0 0 c 0 0 0 0 0 0 0 0 6065.0 978.0 182.0 510.0 580.0 389.0 1234.0 3355.0 0 g 0 0 0 0 0 0 0 0 5204.0 2049.0 41025.0 40626.0 390.0 481.0 37803.0 4948.0 0 t 0 0 0 0 0 0 0 0 1450.0 341.0 427.0 423.0 280.0 724.0 500.0 28663.0 0
MA0867.3_shift8 (SOX4)				; oligos_6nt_mkv3_m3 versus MA0867.3 (SOX4); m=5/11; ncol2=8; w=0; offset=1; strand=D; shift=8; score=0.564046; --------aACAAwGr- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 5582.0 5582.0 0.0 5582.0 5582.0 5582.0 1018.0 2093.0 0 c 0 0 0 0 0 0 0 0 951.0 0.0 5582.0 1.0 6.0 120.0 64.0 1422.0 0 g 0 0 0 0 0 0 0 0 2047.0 0.0 37.0 6.0 11.0 50.0 5582.0 3489.0 0 t 0 0 0 0 0 0 0 0 431.0 9.0 33.0 0.0 0.0 2719.0 83.0 174.0 0
MA1709.2_shift5 (ZIM3)				; oligos_6nt_mkv3_m3 versus MA1709.2 (ZIM3); m=6/11; ncol2=11; w=-2; offset=-2; strand=D; shift=5; score=0.552566; -----mAACAGAAAcC- ; cor=; Ncor= a 0 0 0 0 0 5336.0 16896.0 16502.0 853.0 17067.0 194.0 15879.0 16933.0 14228.0 2482.0 1365.0 0 c 0 0 0 0 0 8338.0 118.0 107.0 15856.0 38.0 72.0 840.0 90.0 306.0 7474.0 15232.0 0 g 0 0 0 0 0 1327.0 106.0 229.0 435.0 39.0 16877.0 165.0 110.0 575.0 3674.0 109.0 0 t 0 0 0 0 0 2219.0 100.0 382.0 76.0 76.0 77.0 336.0 87.0 2111.0 3590.0 514.0 0
MA1623.2_shift4 (Stat2)				; oligos_6nt_mkv3_m3 versus MA1623.2 (Stat2); m=7/11; ncol2=10; w=-3; offset=-3; strand=D; shift=4; score=0.479002; ----gAAACAGAAA--- ; cor=; Ncor= a 0 0 0 0 969.0 3554.0 3736.0 3738.0 286.0 3146.0 152.0 3700.0 3747.0 3514.0 0 0 0 c 0 0 0 0 306.0 76.0 75.0 72.0 2907.0 151.0 45.0 49.0 45.0 147.0 0 0 0 g 0 0 0 0 2287.0 168.0 71.0 87.0 524.0 74.0 3707.0 163.0 98.0 157.0 0 0 0 t 0 0 0 0 397.0 161.0 77.0 62.0 242.0 588.0 55.0 47.0 69.0 141.0 0 0 0
MA0442.3_shift9 (SOX10)				; oligos_6nt_mkv3_m3 versus MA0442.3 (SOX10); m=8/11; ncol2=6; w=0; offset=2; strand=D; shift=9; score=0.463911; ---------ACAAAG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 2023.0 3.0 2029.0 1968.0 1959.0 10.0 0 0 c 0 0 0 0 0 0 0 0 0 4.0 1989.0 7.0 28.0 23.0 13.0 0 0 g 0 0 0 0 0 0 0 0 0 3.0 11.0 7.0 20.0 12.0 2012.0 0 0 t 0 0 0 0 0 0 0 0 0 25.0 52.0 12.0 39.0 61.0 20.0 0 0
MA2326.1_shift9 (IKZF2)				; oligos_6nt_mkv3_m3 versus MA2326.1 (IKZF2); m=9/11; ncol2=6; w=0; offset=2; strand=D; shift=9; score=0.461258; ---------AGGAAG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 11101.0 2.0 5.0 11264.0 11159.0 21.0 0 0 c 0 0 0 0 0 0 0 0 0 208.0 127.0 7.0 25.0 191.0 57.0 0 0 g 0 0 0 0 0 0 0 0 0 79.0 11244.0 11270.0 17.0 26.0 11273.0 0 0 t 0 0 0 0 0 0 0 0 0 6.0 21.0 112.0 88.0 18.0 43.0 0 0
MA0731.1_rc_shift0 (BCL6B_rc)				; oligos_6nt_mkv3_m3 versus MA0731.1_rc (BCL6B_rc); m=10/11; ncol2=17; w=-7; offset=-7; strand=R; shift=0; score=0.440193; kkAATTCCTAGAAAGCA ; cor=; Ncor= a 0.0 0.0 211.0 215.0 0.0 0.0 0.0 0.0 0.0 214.0 0.0 212.0 213.0 212.0 2.0 1.0 207.0 c 7.0 9.0 0.0 0.0 0.0 2.0 171.0 173.0 0.0 34.0 0.0 2.0 0.0 0.0 0.0 186.0 0.0 g 146.0 243.0 16.0 2.0 0.0 0.0 0.0 0.0 0.0 12.0 384.0 0.0 0.0 0.0 367.0 0.0 19.0 t 183.0 113.0 0.0 0.0 290.0 289.0 0.0 0.0 280.0 0.0 0.0 0.0 0.0 0.0 0.0 3.0 0.0
MA1625.2_shift4 (Stat5b)				; oligos_6nt_mkv3_m3 versus MA1625.2 (Stat5b); m=11/11; ncol2=9; w=-3; offset=-3; strand=D; shift=4; score=0.400753; ----TTCCcAGAA---- ; cor=; Ncor= a 0 0 0 0 51.0 92.0 32.0 74.0 462.0 2474.0 10.0 2554.0 2664.0 0 0 0 0 c 0 0 0 0 54.0 34.0 2666.0 2176.0 1746.0 60.0 16.0 35.0 25.0 0 0 0 0 g 0 0 0 0 51.0 34.0 23.0 43.0 127.0 150.0 2717.0 86.0 50.0 0 0 0 0 t 0 0 0 0 2604.0 2600.0 39.0 467.0 425.0 76.0 17.0 85.0 21.0 0 0 0 0