/var/www/html/rsat/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
	file1 	$RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4.tf
 Output files
	match_table_html	$RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
	html_index   	$RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
	prefix       	$RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4.tf
		file1	1	10	135
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv3_m4 MA1989.2 oligos_6nt_mkv3_m4 Bcl11B 0.717 0.645 10 9 9 10 0.9000 0.9000 1.0000 D 1
oligos_6nt_mkv3_m4 MA1655.2 oligos_6nt_mkv3_m4 ZNF341 0.713 0.570 10 8 8 10 0.8000 0.8000 1.0000 D 1
oligos_6nt_mkv3_m4 MA0867.3 oligos_6nt_mkv3_m4 SOX4 0.707 0.566 10 8 8 10 0.8000 0.8000 1.0000 D 2
oligos_6nt_mkv3_m4 MA0868.3 oligos_6nt_mkv3_m4 SOX8 0.760 0.532 10 7 7 10 0.7000 0.7000 1.0000 D 2
oligos_6nt_mkv3_m4 MA0084.2 oligos_6nt_mkv3_m4 SRY 0.752 0.526 10 7 7 10 0.7000 0.7000 1.0000 D 1
oligos_6nt_mkv3_m4 MA0614.1 oligos_6nt_mkv3_m4 Foxj2 0.818 0.521 10 8 7 11 0.6364 0.7000 0.8750 D -1
oligos_6nt_mkv3_m4 MA1489.1 oligos_6nt_mkv3_m4 FOXN3 0.817 0.520 10 8 7 11 0.6364 0.7000 0.8750 D -1
oligos_6nt_mkv3_m4 MA1152.2 oligos_6nt_mkv3_m4 SOX15 0.741 0.519 10 7 7 10 0.7000 0.7000 1.0000 R 3
oligos_6nt_mkv3_m4 MA1561.2 oligos_6nt_mkv3_m4 SOX12 0.732 0.488 10 10 8 12 0.6667 0.8000 0.8000 D -2
oligos_6nt_mkv3_m4 MA0667.1 oligos_6nt_mkv3_m4 MYF6 0.722 0.481 10 10 8 12 0.6667 0.8000 0.8000 D 2
oligos_6nt_mkv3_m4 MA0100.4 oligos_6nt_mkv3_m4 MYB 0.801 0.480 10 6 6 10 0.6000 0.6000 1.0000 D 4
oligos_6nt_mkv3_m4 MA0613.1 oligos_6nt_mkv3_m4 FOXG1 0.750 0.477 10 8 7 11 0.6364 0.7000 0.8750 D -1
oligos_6nt_mkv3_m4 MA0848.1 oligos_6nt_mkv3_m4 FOXO4 0.819 0.447 10 7 6 11 0.5455 0.6000 0.8571 D -1
oligos_6nt_mkv3_m4 MA0030.2 oligos_6nt_mkv3_m4 FOXF2 0.765 0.446 10 9 7 12 0.5833 0.7000 0.7778 D -2
oligos_6nt_mkv3_m4 MA0480.3 oligos_6nt_mkv3_m4 Foxo1 0.813 0.444 10 7 6 11 0.5455 0.6000 0.8571 D -1
oligos_6nt_mkv3_m4 MA0849.1 oligos_6nt_mkv3_m4 FOXO6 0.808 0.441 10 7 6 11 0.5455 0.6000 0.8571 D -1
oligos_6nt_mkv3_m4 MA0157.4 oligos_6nt_mkv3_m4 Foxo3 0.796 0.434 10 7 6 11 0.5455 0.6000 0.8571 D -1
oligos_6nt_mkv3_m4 MA0852.3 oligos_6nt_mkv3_m4 FOXK1 0.795 0.434 10 7 6 11 0.5455 0.6000 0.8571 D -1
oligos_6nt_mkv3_m4 MA0593.2 oligos_6nt_mkv3_m4 FOXP2 0.744 0.434 10 9 7 12 0.5833 0.7000 0.7778 D -2
oligos_6nt_mkv3_m4 MA0033.2 oligos_6nt_mkv3_m4 FOXL1 0.792 0.432 10 7 6 11 0.5455 0.6000 0.8571 D -1
oligos_6nt_mkv3_m4 MA0042.2 oligos_6nt_mkv3_m4 FOXI1 0.789 0.430 10 7 6 11 0.5455 0.6000 0.8571 D -1
oligos_6nt_mkv3_m4 MA2117.1 oligos_6nt_mkv3_m4 FOXP4 0.786 0.429 10 7 6 11 0.5455 0.6000 0.8571 D -1
oligos_6nt_mkv3_m4 MA0850.1 oligos_6nt_mkv3_m4 FOXP3 0.783 0.427 10 7 6 11 0.5455 0.6000 0.8571 D -1
oligos_6nt_mkv3_m4 MA0031.2 oligos_6nt_mkv3_m4 FOXD1 0.772 0.421 10 7 6 11 0.5455 0.6000 0.8571 D -1
oligos_6nt_mkv3_m4 MA1606.2 oligos_6nt_mkv3_m4 Foxf1 0.770 0.420 10 7 6 11 0.5455 0.6000 0.8571 D -1
oligos_6nt_mkv3_m4 MA1103.3 oligos_6nt_mkv3_m4 FOXK2 0.760 0.415 10 7 6 11 0.5455 0.6000 0.8571 D -1
oligos_6nt_mkv3_m4 MA1683.2 oligos_6nt_mkv3_m4 FOXA3 0.760 0.415 10 7 6 11 0.5455 0.6000 0.8571 D -1
oligos_6nt_mkv3_m4 MA0481.4 oligos_6nt_mkv3_m4 FOXP1 0.755 0.412 10 7 6 11 0.5455 0.6000 0.8571 D -1
oligos_6nt_mkv3_m4 MA0846.2 oligos_6nt_mkv3_m4 FOXC2 0.814 0.407 10 11 7 14 0.5000 0.7000 0.6364 D -4
oligos_6nt_mkv3_m4 MA1487.3 oligos_6nt_mkv3_m4 FOXE1 0.867 0.405 10 12 7 15 0.4667 0.7000 0.5833 D -5 
 Host name	rsat
 Job started	2026-07-17.073827
 Job done	2026-07-17.073840
 Seconds	2.03
	user	2.03
	system	0.74
	cuser	9.91
;	csystem	1.02