One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m4_shift5 ; 31 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m4_shift5 (oligos_6nt_mkv3_m4)
; oligos_6nt_mkv3_m4; m=0 (reference); ncol1=10; shift=5; ncol=15; -----amAACAACaa ; Alignment reference a 0 0 0 0 0 64 36 135 135 0 134 135 0 59 46 c 0 0 0 0 0 27 49 0 0 131 0 0 135 31 31 g 0 0 0 0 0 23 29 0 0 0 0 0 0 16 30 t 0 0 0 0 0 21 21 0 0 4 1 0 0 29 28

MA1989.2_shift6 (Bcl11B)
; oligos_6nt_mkv3_m4 versus MA1989.2 (Bcl11B); m=1/30; ncol2=9; w=0; offset=1; strand=D; shift=6; score=0.64486; ------aAACCACAa ; cor=; Ncor= a 0 0 0 0 0 0 24743.0 31408.0 36130.0 1391.0 1058.0 36734.0 1718.0 36053.0 23689.0 c 0 0 0 0 0 0 5084.0 2339.0 1397.0 36798.0 37476.0 940.0 35985.0 1397.0 3546.0 g 0 0 0 0 0 0 3712.0 3044.0 1662.0 762.0 416.0 796.0 1217.0 1246.0 7120.0 t 0 0 0 0 0 0 6252.0 3000.0 602.0 840.0 841.0 1321.0 871.0 1095.0 5436.0

MA1655.2_shift6 (ZNF341)
; oligos_6nt_mkv3_m4 versus MA1655.2 (ZNF341); m=2/30; ncol2=8; w=0; offset=1; strand=D; shift=6; score=0.570026; ------GAACAGCc- ; cor=; Ncor= a 0 0 0 0 0 0 1504.0 17074.0 17700.0 301.0 17627.0 168.0 227.0 3082.0 0 c 0 0 0 0 0 0 2043.0 955.0 211.0 16813.0 399.0 359.0 18003.0 10946.0 0 g 0 0 0 0 0 0 13739.0 513.0 576.0 1033.0 468.0 17972.0 270.0 2289.0 0 t 0 0 0 0 0 0 1442.0 186.0 241.0 581.0 234.0 229.0 228.0 2411.0 0

MA0867.3_shift7 (SOX4)
; oligos_6nt_mkv3_m4 versus MA0867.3 (SOX4); m=3/30; ncol2=8; w=0; offset=2; strand=D; shift=7; score=0.56587; -------aACAAwGr ; cor=; Ncor= a 0 0 0 0 0 0 0 5582.0 5582.0 0.0 5582.0 5582.0 5582.0 1018.0 2093.0 c 0 0 0 0 0 0 0 951.0 0.0 5582.0 1.0 6.0 120.0 64.0 1422.0 g 0 0 0 0 0 0 0 2047.0 0.0 37.0 6.0 11.0 50.0 5582.0 3489.0 t 0 0 0 0 0 0 0 431.0 9.0 33.0 0.0 0.0 2719.0 83.0 174.0

MA0868.3_shift7 (SOX8)
; oligos_6nt_mkv3_m4 versus MA0868.3 (SOX8); m=4/30; ncol2=7; w=0; offset=2; strand=D; shift=7; score=0.531965; -------AACAATr- ; cor=; Ncor= a 0 0 0 0 0 0 0 1827.0 1827.0 3.0 1827.0 1827.0 273.0 1356.0 0 c 0 0 0 0 0 0 0 151.0 0.0 1827.0 0.0 43.0 36.0 208.0 0 g 0 0 0 0 0 0 0 263.0 0.0 35.0 0.0 0.0 20.0 1827.0 0 t 0 0 0 0 0 0 0 222.0 45.0 70.0 16.0 36.0 1827.0 287.0 0

MA0084.2_shift6 (SRY)
; oligos_6nt_mkv3_m4 versus MA0084.2 (SRY); m=5/30; ncol2=7; w=0; offset=1; strand=D; shift=6; score=0.526254; ------waACAAw-- ; cor=; Ncor= a 0 0 0 0 0 0 15.0 18.0 25.0 0.0 28.0 27.0 7.0 0 0 c 0 0 0 0 0 0 0.0 3.0 0.0 26.0 0.0 0.0 0.0 0 0 g 0 0 0 0 0 0 3.0 3.0 0.0 0.0 0.0 1.0 2.0 0 0 t 0 0 0 0 0 0 10.0 4.0 3.0 2.0 0.0 0.0 19.0 0 0

MA0614.1_shift4 (Foxj2)
; oligos_6nt_mkv3_m4 versus MA0614.1 (Foxj2); m=6/30; ncol2=8; w=-1; offset=-1; strand=D; shift=4; score=0.520626; ----rTAAACAa--- ; cor=; Ncor= a 0 0 0 0 461.0 50.0 795.0 977.0 999.0 0.0 999.0 593.0 0 0 0 c 0 0 0 0 0.0 25.0 205.0 0.0 0.0 954.0 0.0 125.0 0 0 0 g 0 0 0 0 538.0 0.0 0.0 0.0 0.0 0.0 0.0 125.0 0 0 0 t 0 0 0 0 0.0 924.0 0.0 22.0 0.0 46.0 0.0 156.0 0 0 0

MA1489.1_shift4 (FOXN3)
; oligos_6nt_mkv3_m4 versus MA1489.1 (FOXN3); m=7/30; ncol2=8; w=-1; offset=-1; strand=D; shift=4; score=0.520046; ----GTAAACAA--- ; cor=; Ncor= a 0 0 0 0 9.0 9.0 971.0 971.0 971.0 9.0 971.0 971.0 0 0 0 c 0 0 0 0 9.0 9.0 9.0 9.0 9.0 971.0 9.0 9.0 0 0 0 g 0 0 0 0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 0 0 0 t 0 0 0 0 9.0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 0 0 0

MA1152.2_rc_shift8 (SOX15_rc)
; oligos_6nt_mkv3_m4 versus MA1152.2_rc (SOX15_rc); m=8/30; ncol2=7; w=0; offset=3; strand=R; shift=8; score=0.518625; --------ACAAwrr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 971.0 5.0 994.0 988.0 362.0 501.0 267.0 c 0 0 0 0 0 0 0 0 3.0 890.0 2.0 6.0 5.0 26.0 147.0 g 0 0 0 0 0 0 0 0 2.0 21.0 2.0 3.0 3.0 412.0 554.0 t 0 0 0 0 0 0 0 0 24.0 83.0 3.0 3.0 631.0 62.0 32.0

MA1561.2_shift3 (SOX12)
; oligos_6nt_mkv3_m4 versus MA1561.2 (SOX12); m=9/30; ncol2=10; w=-2; offset=-2; strand=D; shift=3; score=0.488048; ---aCCGAACAAT-- ; cor=; Ncor= a 0 0 0 854.0 153.0 48.0 47.0 854.0 854.0 0.0 854.0 854.0 129.0 0 0 c 0 0 0 267.0 854.0 854.0 26.0 26.0 2.0 854.0 0.0 91.0 211.0 0 0 g 0 0 0 109.0 58.0 34.0 854.0 2.0 4.0 0.0 0.0 44.0 57.0 0 0 t 0 0 0 138.0 78.0 56.0 48.0 1.0 0.0 3.0 0.0 20.0 854.0 0 0

MA0667.1_shift7 (MYF6)
; oligos_6nt_mkv3_m4 versus MA0667.1 (MYF6); m=10/30; ncol2=10; w=0; offset=2; strand=D; shift=7; score=0.481465; -------AACArCTG ; cor=; Ncor= a 0 0 0 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 c 0 0 0 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 g 0 0 0 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 t 0 0 0 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0

MA0100.4_shift9 (MYB)
; oligos_6nt_mkv3_m4 versus MA0100.4 (MYB); m=11/30; ncol2=6; w=0; offset=4; strand=D; shift=9; score=0.480454; ---------CAACTG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0.0 1478.0 1519.0 0.0 1.0 8.0 c 0 0 0 0 0 0 0 0 0 1513.0 3.0 2.0 1527.0 60.0 3.0 g 0 0 0 0 0 0 0 0 0 5.0 39.0 0.0 0.0 68.0 1516.0 t 0 0 0 0 0 0 0 0 0 9.0 7.0 6.0 0.0 1398.0 0.0

MA0613.1_shift4 (FOXG1)
; oligos_6nt_mkv3_m4 versus MA0613.1 (FOXG1); m=12/30; ncol2=8; w=-1; offset=-1; strand=D; shift=4; score=0.477044; ----rTAAACAw--- ; cor=; Ncor= a 0 0 0 0 374.0 1.0 997.0 997.0 997.0 1.0 997.0 498.0 0 0 0 c 0 0 0 0 1.0 1.0 1.0 1.0 1.0 997.0 1.0 167.0 0 0 0 g 0 0 0 0 623.0 1.0 1.0 1.0 1.0 1.0 1.0 2.0 0 0 0 t 0 0 0 0 1.0 997.0 1.0 1.0 1.0 1.0 1.0 333.0 0 0 0

MA0848.1_shift4 (FOXO4)
; oligos_6nt_mkv3_m4 versus MA0848.1 (FOXO4); m=13/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.446901; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 1669.0 345.0 5378.0 5378.0 5378.0 58.0 5378.0 0 0 0 0 c 0 0 0 0 13.0 69.0 1259.0 146.0 0.0 5378.0 10.0 0 0 0 0 g 0 0 0 0 5378.0 123.0 32.0 19.0 90.0 33.0 10.0 0 0 0 0 t 0 0 0 0 0.0 5378.0 20.0 20.0 10.0 958.0 40.0 0 0 0 0

MA0030.2_shift3 (FOXF2)
; oligos_6nt_mkv3_m4 versus MA0030.2 (FOXF2); m=14/30; ncol2=9; w=-2; offset=-2; strand=D; shift=3; score=0.446054; ---sRTAAACAa--- ; cor=; Ncor= a 0 0 0 3.0 7.0 0.0 27.0 27.0 27.0 0.0 27.0 16.0 0 0 0 c 0 0 0 11.0 0.0 0.0 0.0 0.0 0.0 25.0 0.0 4.0 0 0 0 g 0 0 0 8.0 20.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 0 0 0 t 0 0 0 0.0 0.0 27.0 0.0 0.0 0.0 2.0 0.0 5.0 0 0 0

MA0480.3_shift4 (Foxo1)
; oligos_6nt_mkv3_m4 versus MA0480.3 (Foxo1); m=15/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.44356; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 1411.0 945.0 12408.0 12663.0 12972.0 293.0 13332.0 0 0 0 0 c 0 0 0 0 481.0 555.0 934.0 849.0 387.0 12710.0 277.0 0 0 0 0 g 0 0 0 0 11670.0 1025.0 478.0 384.0 508.0 356.0 153.0 0 0 0 0 t 0 0 0 0 554.0 11591.0 296.0 220.0 249.0 757.0 354.0 0 0 0 0

MA0849.1_shift4 (FOXO6)
; oligos_6nt_mkv3_m4 versus MA0849.1 (FOXO6); m=16/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.440627; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 1445.0 154.0 7025.0 7025.0 7025.0 0.0 7025.0 0 0 0 0 c 0 0 0 0 0.0 0.0 1147.0 195.0 0.0 7025.0 0.0 0 0 0 0 g 0 0 0 0 7025.0 32.0 7.0 0.0 0.0 31.0 13.0 0 0 0 0 t 0 0 0 0 0.0 7025.0 0.0 26.0 0.0 385.0 0.0 0 0 0 0

MA0157.4_shift4 (Foxo3)
; oligos_6nt_mkv3_m4 versus MA0157.4 (Foxo3); m=17/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.434444; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 3470.0 1546.0 22240.0 22288.0 22551.0 403.0 22141.0 0 0 0 0 c 0 0 0 0 590.0 435.0 968.0 803.0 483.0 21237.0 587.0 0 0 0 0 g 0 0 0 0 19202.0 1199.0 328.0 333.0 464.0 361.0 361.0 0 0 0 0 t 0 0 0 0 650.0 20732.0 376.0 488.0 414.0 1911.0 823.0 0 0 0 0

MA0852.3_shift4 (FOXK1)
; oligos_6nt_mkv3_m4 versus MA0852.3 (FOXK1); m=18/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.433885; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 143.0 60.0 1003.0 999.0 1022.0 10.0 1015.0 0 0 0 0 c 0 0 0 0 28.0 5.0 37.0 37.0 13.0 958.0 16.0 0 0 0 0 g 0 0 0 0 868.0 44.0 10.0 11.0 10.0 12.0 12.0 0 0 0 0 t 0 0 0 0 17.0 947.0 6.0 9.0 11.0 76.0 13.0 0 0 0 0

MA0593.2_shift3 (FOXP2)
; oligos_6nt_mkv3_m4 versus MA0593.2 (FOXP2); m=19/30; ncol2=9; w=-2; offset=-2; strand=D; shift=3; score=0.433842; ---wGTAAACAr--- ; cor=; Ncor= a 0 0 0 340.0 160.0 59.0 766.0 766.0 766.0 0.0 766.0 297.0 0 0 0 c 0 0 0 7.0 0.0 0.0 0.0 0.0 0.0 757.0 0.0 154.0 0 0 0 g 0 0 0 142.0 606.0 0.0 0.0 0.0 0.0 0.0 0.0 293.0 0 0 0 t 0 0 0 277.0 0.0 707.0 0.0 0.0 0.0 9.0 0.0 22.0 0 0 0

MA0033.2_shift4 (FOXL1)
; oligos_6nt_mkv3_m4 versus MA0033.2 (FOXL1); m=20/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.431946; ----rTAAACA---- ; cor=; Ncor= a 0 0 0 0 2102.0 10.0 4780.0 4780.0 4780.0 0.0 4780.0 0 0 0 0 c 0 0 0 0 13.0 416.0 628.0 38.0 82.0 3723.0 54.0 0 0 0 0 g 0 0 0 0 2678.0 0.0 57.0 0.0 50.0 0.0 0.0 0 0 0 0 t 0 0 0 0 140.0 4780.0 0.0 15.0 0.0 1057.0 17.0 0 0 0 0

MA0042.2_shift4 (FOXI1)
; oligos_6nt_mkv3_m4 versus MA0042.2 (FOXI1); m=21/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.430424; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 618.0 74.0 5175.0 5175.0 5175.0 157.0 5175.0 0 0 0 0 c 0 0 0 0 39.0 60.0 540.0 23.0 23.0 5175.0 12.0 0 0 0 0 g 0 0 0 0 5175.0 35.0 37.0 0.0 29.0 48.0 25.0 0 0 0 0 t 0 0 0 0 0.0 5175.0 0.0 0.0 66.0 810.0 0.0 0 0 0 0

MA2117.1_shift4 (FOXP4)
; oligos_6nt_mkv3_m4 versus MA2117.1 (FOXP4); m=22/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.428788; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 2224.0 543.0 19122.0 19613.0 20280.0 379.0 20230.0 0 0 0 0 c 0 0 0 0 834.0 793.0 1545.0 1330.0 419.0 18349.0 443.0 0 0 0 0 g 0 0 0 0 17315.0 539.0 534.0 368.0 550.0 493.0 218.0 0 0 0 0 t 0 0 0 0 1294.0 19792.0 466.0 356.0 418.0 2446.0 776.0 0 0 0 0

MA0850.1_shift4 (FOXP3)
; oligos_6nt_mkv3_m4 versus MA0850.1 (FOXP3); m=23/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.426944; ----rTAAACA---- ; cor=; Ncor= a 0 0 0 0 74.0 20.0 211.0 211.0 211.0 0.0 211.0 0 0 0 0 c 0 0 0 0 0.0 52.0 0.0 0.0 15.0 211.0 0.0 0 0 0 0 g 0 0 0 0 137.0 0.0 0.0 9.0 49.0 32.0 18.0 0 0 0 0 t 0 0 0 0 0.0 211.0 31.0 8.0 0.0 39.0 0.0 0 0 0 0

MA0031.2_shift4 (FOXD1)
; oligos_6nt_mkv3_m4 versus MA0031.2 (FOXD1); m=24/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.421093; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 1.0 0.0 19.0 20.0 18.0 1.0 20.0 0 0 0 0 c 0 0 0 0 1.0 0.0 1.0 0.0 1.0 18.0 0.0 0 0 0 0 g 0 0 0 0 17.0 0.0 0.0 0.0 1.0 0.0 0.0 0 0 0 0 t 0 0 0 0 1.0 20.0 0.0 0.0 0.0 1.0 0.0 0 0 0 0

MA1606.2_shift4 (Foxf1)
; oligos_6nt_mkv3_m4 versus MA1606.2 (Foxf1); m=25/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.419817; ----rTAAACA---- ; cor=; Ncor= a 0 0 0 0 18534.0 568.0 57293.0 53942.0 57167.0 437.0 56436.0 0 0 0 0 c 0 0 0 0 3754.0 446.0 899.0 2249.0 475.0 54394.0 745.0 0 0 0 0 g 0 0 0 0 33599.0 1158.0 445.0 811.0 1067.0 522.0 443.0 0 0 0 0 t 0 0 0 0 3653.0 57368.0 903.0 2538.0 831.0 4187.0 1916.0 0 0 0 0

MA1103.3_shift4 (FOXK2)
; oligos_6nt_mkv3_m4 versus MA1103.3 (FOXK2); m=26/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.414778; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 2697.0 360.0 15913.0 14387.0 15593.0 499.0 15709.0 0 0 0 0 c 0 0 0 0 551.0 210.0 277.0 1291.0 330.0 14282.0 295.0 0 0 0 0 g 0 0 0 0 12737.0 327.0 148.0 436.0 391.0 426.0 170.0 0 0 0 0 t 0 0 0 0 694.0 15782.0 341.0 565.0 365.0 1472.0 505.0 0 0 0 0

MA1683.2_shift4 (FOXA3)
; oligos_6nt_mkv3_m4 versus MA1683.2 (FOXA3); m=27/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.414745; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 4481.0 758.0 45178.0 43099.0 46046.0 951.0 45552.0 0 0 0 0 c 0 0 0 0 1464.0 903.0 1980.0 3883.0 973.0 39509.0 933.0 0 0 0 0 g 0 0 0 0 40396.0 690.0 636.0 977.0 934.0 1205.0 614.0 0 0 0 0 t 0 0 0 0 2596.0 46586.0 1143.0 978.0 984.0 7272.0 1838.0 0 0 0 0

MA0481.4_shift4 (FOXP1)
; oligos_6nt_mkv3_m4 versus MA0481.4 (FOXP1); m=28/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.41166; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 10463.0 1209.0 69603.0 65236.0 70030.0 1336.0 68456.0 0 0 0 0 c 0 0 0 0 1573.0 727.0 2095.0 5067.0 1487.0 61094.0 1904.0 0 0 0 0 g 0 0 0 0 59571.0 920.0 1073.0 1830.0 1132.0 1493.0 749.0 0 0 0 0 t 0 0 0 0 3111.0 71862.0 1947.0 2585.0 2069.0 10795.0 3609.0 0 0 0 0

MA0846.2_shift1 (FOXC2)
; oligos_6nt_mkv3_m4 versus MA0846.2 (FOXC2); m=29/30; ncol2=11; w=-4; offset=-4; strand=D; shift=1; score=0.407236; -wAwrTAAAYAw--- ; cor=; Ncor= a 0 8939.0 20456.0 11301.0 6418.0 2005.0 20456.0 20456.0 20456.0 31.0 20456.0 13296.0 0 0 0 c 0 1279.0 1652.0 3476.0 440.0 3773.0 6759.0 344.0 105.0 14435.0 101.0 2087.0 0 0 0 g 0 454.0 5093.0 3129.0 14038.0 321.0 87.0 81.0 279.0 68.0 328.0 1710.0 0 0 0 t 0 11517.0 2080.0 9155.0 136.0 20456.0 122.0 107.0 242.0 6021.0 215.0 7160.0 0 0 0

MA1487.3_shift0 (FOXE1)
; oligos_6nt_mkv3_m4 versus MA1487.3 (FOXE1); m=30/30; ncol2=12; w=-5; offset=-5; strand=D; shift=0; score=0.404554; yTAARyAAACAa--- ; cor=; Ncor= a 86.0 581.0 3126.0 2547.0 2255.0 587.0 3126.0 3126.0 3126.0 0.0 3126.0 2026.0 0 0 0 c 1646.0 43.0 28.0 113.0 117.0 1062.0 362.0 90.0 0.0 3126.0 32.0 392.0 0 0 0 g 57.0 0.0 402.0 116.0 871.0 17.0 0.0 0.0 23.0 0.0 18.0 258.0 0 0 0 t 1479.0 2545.0 43.0 579.0 27.0 2064.0 20.0 53.0 9.0 85.0 110.0 450.0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m4_shift5 (oligos_6nt_mkv3_m4)				; oligos_6nt_mkv3_m4; m=0 (reference); ncol1=10; shift=5; ncol=15; -----amAACAACaa ; Alignment reference a 0 0 0 0 0 64 36 135 135 0 134 135 0 59 46 c 0 0 0 0 0 27 49 0 0 131 0 0 135 31 31 g 0 0 0 0 0 23 29 0 0 0 0 0 0 16 30 t 0 0 0 0 0 21 21 0 0 4 1 0 0 29 28
MA1989.2_shift6 (Bcl11B)				; oligos_6nt_mkv3_m4 versus MA1989.2 (Bcl11B); m=1/30; ncol2=9; w=0; offset=1; strand=D; shift=6; score=0.64486; ------aAACCACAa ; cor=; Ncor= a 0 0 0 0 0 0 24743.0 31408.0 36130.0 1391.0 1058.0 36734.0 1718.0 36053.0 23689.0 c 0 0 0 0 0 0 5084.0 2339.0 1397.0 36798.0 37476.0 940.0 35985.0 1397.0 3546.0 g 0 0 0 0 0 0 3712.0 3044.0 1662.0 762.0 416.0 796.0 1217.0 1246.0 7120.0 t 0 0 0 0 0 0 6252.0 3000.0 602.0 840.0 841.0 1321.0 871.0 1095.0 5436.0
MA1655.2_shift6 (ZNF341)				; oligos_6nt_mkv3_m4 versus MA1655.2 (ZNF341); m=2/30; ncol2=8; w=0; offset=1; strand=D; shift=6; score=0.570026; ------GAACAGCc- ; cor=; Ncor= a 0 0 0 0 0 0 1504.0 17074.0 17700.0 301.0 17627.0 168.0 227.0 3082.0 0 c 0 0 0 0 0 0 2043.0 955.0 211.0 16813.0 399.0 359.0 18003.0 10946.0 0 g 0 0 0 0 0 0 13739.0 513.0 576.0 1033.0 468.0 17972.0 270.0 2289.0 0 t 0 0 0 0 0 0 1442.0 186.0 241.0 581.0 234.0 229.0 228.0 2411.0 0
MA0867.3_shift7 (SOX4)				; oligos_6nt_mkv3_m4 versus MA0867.3 (SOX4); m=3/30; ncol2=8; w=0; offset=2; strand=D; shift=7; score=0.56587; -------aACAAwGr ; cor=; Ncor= a 0 0 0 0 0 0 0 5582.0 5582.0 0.0 5582.0 5582.0 5582.0 1018.0 2093.0 c 0 0 0 0 0 0 0 951.0 0.0 5582.0 1.0 6.0 120.0 64.0 1422.0 g 0 0 0 0 0 0 0 2047.0 0.0 37.0 6.0 11.0 50.0 5582.0 3489.0 t 0 0 0 0 0 0 0 431.0 9.0 33.0 0.0 0.0 2719.0 83.0 174.0
MA0868.3_shift7 (SOX8)				; oligos_6nt_mkv3_m4 versus MA0868.3 (SOX8); m=4/30; ncol2=7; w=0; offset=2; strand=D; shift=7; score=0.531965; -------AACAATr- ; cor=; Ncor= a 0 0 0 0 0 0 0 1827.0 1827.0 3.0 1827.0 1827.0 273.0 1356.0 0 c 0 0 0 0 0 0 0 151.0 0.0 1827.0 0.0 43.0 36.0 208.0 0 g 0 0 0 0 0 0 0 263.0 0.0 35.0 0.0 0.0 20.0 1827.0 0 t 0 0 0 0 0 0 0 222.0 45.0 70.0 16.0 36.0 1827.0 287.0 0
MA0084.2_shift6 (SRY)				; oligos_6nt_mkv3_m4 versus MA0084.2 (SRY); m=5/30; ncol2=7; w=0; offset=1; strand=D; shift=6; score=0.526254; ------waACAAw-- ; cor=; Ncor= a 0 0 0 0 0 0 15.0 18.0 25.0 0.0 28.0 27.0 7.0 0 0 c 0 0 0 0 0 0 0.0 3.0 0.0 26.0 0.0 0.0 0.0 0 0 g 0 0 0 0 0 0 3.0 3.0 0.0 0.0 0.0 1.0 2.0 0 0 t 0 0 0 0 0 0 10.0 4.0 3.0 2.0 0.0 0.0 19.0 0 0
MA0614.1_shift4 (Foxj2)				; oligos_6nt_mkv3_m4 versus MA0614.1 (Foxj2); m=6/30; ncol2=8; w=-1; offset=-1; strand=D; shift=4; score=0.520626; ----rTAAACAa--- ; cor=; Ncor= a 0 0 0 0 461.0 50.0 795.0 977.0 999.0 0.0 999.0 593.0 0 0 0 c 0 0 0 0 0.0 25.0 205.0 0.0 0.0 954.0 0.0 125.0 0 0 0 g 0 0 0 0 538.0 0.0 0.0 0.0 0.0 0.0 0.0 125.0 0 0 0 t 0 0 0 0 0.0 924.0 0.0 22.0 0.0 46.0 0.0 156.0 0 0 0
MA1489.1_shift4 (FOXN3)				; oligos_6nt_mkv3_m4 versus MA1489.1 (FOXN3); m=7/30; ncol2=8; w=-1; offset=-1; strand=D; shift=4; score=0.520046; ----GTAAACAA--- ; cor=; Ncor= a 0 0 0 0 9.0 9.0 971.0 971.0 971.0 9.0 971.0 971.0 0 0 0 c 0 0 0 0 9.0 9.0 9.0 9.0 9.0 971.0 9.0 9.0 0 0 0 g 0 0 0 0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 0 0 0 t 0 0 0 0 9.0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 0 0 0
MA1152.2_rc_shift8 (SOX15_rc)				; oligos_6nt_mkv3_m4 versus MA1152.2_rc (SOX15_rc); m=8/30; ncol2=7; w=0; offset=3; strand=R; shift=8; score=0.518625; --------ACAAwrr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 971.0 5.0 994.0 988.0 362.0 501.0 267.0 c 0 0 0 0 0 0 0 0 3.0 890.0 2.0 6.0 5.0 26.0 147.0 g 0 0 0 0 0 0 0 0 2.0 21.0 2.0 3.0 3.0 412.0 554.0 t 0 0 0 0 0 0 0 0 24.0 83.0 3.0 3.0 631.0 62.0 32.0
MA1561.2_shift3 (SOX12)				; oligos_6nt_mkv3_m4 versus MA1561.2 (SOX12); m=9/30; ncol2=10; w=-2; offset=-2; strand=D; shift=3; score=0.488048; ---aCCGAACAAT-- ; cor=; Ncor= a 0 0 0 854.0 153.0 48.0 47.0 854.0 854.0 0.0 854.0 854.0 129.0 0 0 c 0 0 0 267.0 854.0 854.0 26.0 26.0 2.0 854.0 0.0 91.0 211.0 0 0 g 0 0 0 109.0 58.0 34.0 854.0 2.0 4.0 0.0 0.0 44.0 57.0 0 0 t 0 0 0 138.0 78.0 56.0 48.0 1.0 0.0 3.0 0.0 20.0 854.0 0 0
MA0667.1_shift7 (MYF6)				; oligos_6nt_mkv3_m4 versus MA0667.1 (MYF6); m=10/30; ncol2=10; w=0; offset=2; strand=D; shift=7; score=0.481465; -------AACArCTG ; cor=; Ncor= a 0 0 0 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 c 0 0 0 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 g 0 0 0 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 t 0 0 0 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0
MA0100.4_shift9 (MYB)				; oligos_6nt_mkv3_m4 versus MA0100.4 (MYB); m=11/30; ncol2=6; w=0; offset=4; strand=D; shift=9; score=0.480454; ---------CAACTG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0.0 1478.0 1519.0 0.0 1.0 8.0 c 0 0 0 0 0 0 0 0 0 1513.0 3.0 2.0 1527.0 60.0 3.0 g 0 0 0 0 0 0 0 0 0 5.0 39.0 0.0 0.0 68.0 1516.0 t 0 0 0 0 0 0 0 0 0 9.0 7.0 6.0 0.0 1398.0 0.0
MA0613.1_shift4 (FOXG1)				; oligos_6nt_mkv3_m4 versus MA0613.1 (FOXG1); m=12/30; ncol2=8; w=-1; offset=-1; strand=D; shift=4; score=0.477044; ----rTAAACAw--- ; cor=; Ncor= a 0 0 0 0 374.0 1.0 997.0 997.0 997.0 1.0 997.0 498.0 0 0 0 c 0 0 0 0 1.0 1.0 1.0 1.0 1.0 997.0 1.0 167.0 0 0 0 g 0 0 0 0 623.0 1.0 1.0 1.0 1.0 1.0 1.0 2.0 0 0 0 t 0 0 0 0 1.0 997.0 1.0 1.0 1.0 1.0 1.0 333.0 0 0 0
MA0848.1_shift4 (FOXO4)				; oligos_6nt_mkv3_m4 versus MA0848.1 (FOXO4); m=13/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.446901; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 1669.0 345.0 5378.0 5378.0 5378.0 58.0 5378.0 0 0 0 0 c 0 0 0 0 13.0 69.0 1259.0 146.0 0.0 5378.0 10.0 0 0 0 0 g 0 0 0 0 5378.0 123.0 32.0 19.0 90.0 33.0 10.0 0 0 0 0 t 0 0 0 0 0.0 5378.0 20.0 20.0 10.0 958.0 40.0 0 0 0 0
MA0030.2_shift3 (FOXF2)				; oligos_6nt_mkv3_m4 versus MA0030.2 (FOXF2); m=14/30; ncol2=9; w=-2; offset=-2; strand=D; shift=3; score=0.446054; ---sRTAAACAa--- ; cor=; Ncor= a 0 0 0 3.0 7.0 0.0 27.0 27.0 27.0 0.0 27.0 16.0 0 0 0 c 0 0 0 11.0 0.0 0.0 0.0 0.0 0.0 25.0 0.0 4.0 0 0 0 g 0 0 0 8.0 20.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 0 0 0 t 0 0 0 0.0 0.0 27.0 0.0 0.0 0.0 2.0 0.0 5.0 0 0 0
MA0480.3_shift4 (Foxo1)				; oligos_6nt_mkv3_m4 versus MA0480.3 (Foxo1); m=15/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.44356; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 1411.0 945.0 12408.0 12663.0 12972.0 293.0 13332.0 0 0 0 0 c 0 0 0 0 481.0 555.0 934.0 849.0 387.0 12710.0 277.0 0 0 0 0 g 0 0 0 0 11670.0 1025.0 478.0 384.0 508.0 356.0 153.0 0 0 0 0 t 0 0 0 0 554.0 11591.0 296.0 220.0 249.0 757.0 354.0 0 0 0 0
MA0849.1_shift4 (FOXO6)				; oligos_6nt_mkv3_m4 versus MA0849.1 (FOXO6); m=16/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.440627; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 1445.0 154.0 7025.0 7025.0 7025.0 0.0 7025.0 0 0 0 0 c 0 0 0 0 0.0 0.0 1147.0 195.0 0.0 7025.0 0.0 0 0 0 0 g 0 0 0 0 7025.0 32.0 7.0 0.0 0.0 31.0 13.0 0 0 0 0 t 0 0 0 0 0.0 7025.0 0.0 26.0 0.0 385.0 0.0 0 0 0 0
MA0157.4_shift4 (Foxo3)				; oligos_6nt_mkv3_m4 versus MA0157.4 (Foxo3); m=17/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.434444; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 3470.0 1546.0 22240.0 22288.0 22551.0 403.0 22141.0 0 0 0 0 c 0 0 0 0 590.0 435.0 968.0 803.0 483.0 21237.0 587.0 0 0 0 0 g 0 0 0 0 19202.0 1199.0 328.0 333.0 464.0 361.0 361.0 0 0 0 0 t 0 0 0 0 650.0 20732.0 376.0 488.0 414.0 1911.0 823.0 0 0 0 0
MA0852.3_shift4 (FOXK1)				; oligos_6nt_mkv3_m4 versus MA0852.3 (FOXK1); m=18/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.433885; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 143.0 60.0 1003.0 999.0 1022.0 10.0 1015.0 0 0 0 0 c 0 0 0 0 28.0 5.0 37.0 37.0 13.0 958.0 16.0 0 0 0 0 g 0 0 0 0 868.0 44.0 10.0 11.0 10.0 12.0 12.0 0 0 0 0 t 0 0 0 0 17.0 947.0 6.0 9.0 11.0 76.0 13.0 0 0 0 0
MA0593.2_shift3 (FOXP2)				; oligos_6nt_mkv3_m4 versus MA0593.2 (FOXP2); m=19/30; ncol2=9; w=-2; offset=-2; strand=D; shift=3; score=0.433842; ---wGTAAACAr--- ; cor=; Ncor= a 0 0 0 340.0 160.0 59.0 766.0 766.0 766.0 0.0 766.0 297.0 0 0 0 c 0 0 0 7.0 0.0 0.0 0.0 0.0 0.0 757.0 0.0 154.0 0 0 0 g 0 0 0 142.0 606.0 0.0 0.0 0.0 0.0 0.0 0.0 293.0 0 0 0 t 0 0 0 277.0 0.0 707.0 0.0 0.0 0.0 9.0 0.0 22.0 0 0 0
MA0033.2_shift4 (FOXL1)				; oligos_6nt_mkv3_m4 versus MA0033.2 (FOXL1); m=20/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.431946; ----rTAAACA---- ; cor=; Ncor= a 0 0 0 0 2102.0 10.0 4780.0 4780.0 4780.0 0.0 4780.0 0 0 0 0 c 0 0 0 0 13.0 416.0 628.0 38.0 82.0 3723.0 54.0 0 0 0 0 g 0 0 0 0 2678.0 0.0 57.0 0.0 50.0 0.0 0.0 0 0 0 0 t 0 0 0 0 140.0 4780.0 0.0 15.0 0.0 1057.0 17.0 0 0 0 0
MA0042.2_shift4 (FOXI1)				; oligos_6nt_mkv3_m4 versus MA0042.2 (FOXI1); m=21/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.430424; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 618.0 74.0 5175.0 5175.0 5175.0 157.0 5175.0 0 0 0 0 c 0 0 0 0 39.0 60.0 540.0 23.0 23.0 5175.0 12.0 0 0 0 0 g 0 0 0 0 5175.0 35.0 37.0 0.0 29.0 48.0 25.0 0 0 0 0 t 0 0 0 0 0.0 5175.0 0.0 0.0 66.0 810.0 0.0 0 0 0 0
MA2117.1_shift4 (FOXP4)				; oligos_6nt_mkv3_m4 versus MA2117.1 (FOXP4); m=22/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.428788; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 2224.0 543.0 19122.0 19613.0 20280.0 379.0 20230.0 0 0 0 0 c 0 0 0 0 834.0 793.0 1545.0 1330.0 419.0 18349.0 443.0 0 0 0 0 g 0 0 0 0 17315.0 539.0 534.0 368.0 550.0 493.0 218.0 0 0 0 0 t 0 0 0 0 1294.0 19792.0 466.0 356.0 418.0 2446.0 776.0 0 0 0 0
MA0850.1_shift4 (FOXP3)				; oligos_6nt_mkv3_m4 versus MA0850.1 (FOXP3); m=23/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.426944; ----rTAAACA---- ; cor=; Ncor= a 0 0 0 0 74.0 20.0 211.0 211.0 211.0 0.0 211.0 0 0 0 0 c 0 0 0 0 0.0 52.0 0.0 0.0 15.0 211.0 0.0 0 0 0 0 g 0 0 0 0 137.0 0.0 0.0 9.0 49.0 32.0 18.0 0 0 0 0 t 0 0 0 0 0.0 211.0 31.0 8.0 0.0 39.0 0.0 0 0 0 0
MA0031.2_shift4 (FOXD1)				; oligos_6nt_mkv3_m4 versus MA0031.2 (FOXD1); m=24/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.421093; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 1.0 0.0 19.0 20.0 18.0 1.0 20.0 0 0 0 0 c 0 0 0 0 1.0 0.0 1.0 0.0 1.0 18.0 0.0 0 0 0 0 g 0 0 0 0 17.0 0.0 0.0 0.0 1.0 0.0 0.0 0 0 0 0 t 0 0 0 0 1.0 20.0 0.0 0.0 0.0 1.0 0.0 0 0 0 0
MA1606.2_shift4 (Foxf1)				; oligos_6nt_mkv3_m4 versus MA1606.2 (Foxf1); m=25/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.419817; ----rTAAACA---- ; cor=; Ncor= a 0 0 0 0 18534.0 568.0 57293.0 53942.0 57167.0 437.0 56436.0 0 0 0 0 c 0 0 0 0 3754.0 446.0 899.0 2249.0 475.0 54394.0 745.0 0 0 0 0 g 0 0 0 0 33599.0 1158.0 445.0 811.0 1067.0 522.0 443.0 0 0 0 0 t 0 0 0 0 3653.0 57368.0 903.0 2538.0 831.0 4187.0 1916.0 0 0 0 0
MA1103.3_shift4 (FOXK2)				; oligos_6nt_mkv3_m4 versus MA1103.3 (FOXK2); m=26/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.414778; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 2697.0 360.0 15913.0 14387.0 15593.0 499.0 15709.0 0 0 0 0 c 0 0 0 0 551.0 210.0 277.0 1291.0 330.0 14282.0 295.0 0 0 0 0 g 0 0 0 0 12737.0 327.0 148.0 436.0 391.0 426.0 170.0 0 0 0 0 t 0 0 0 0 694.0 15782.0 341.0 565.0 365.0 1472.0 505.0 0 0 0 0
MA1683.2_shift4 (FOXA3)				; oligos_6nt_mkv3_m4 versus MA1683.2 (FOXA3); m=27/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.414745; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 4481.0 758.0 45178.0 43099.0 46046.0 951.0 45552.0 0 0 0 0 c 0 0 0 0 1464.0 903.0 1980.0 3883.0 973.0 39509.0 933.0 0 0 0 0 g 0 0 0 0 40396.0 690.0 636.0 977.0 934.0 1205.0 614.0 0 0 0 0 t 0 0 0 0 2596.0 46586.0 1143.0 978.0 984.0 7272.0 1838.0 0 0 0 0
MA0481.4_shift4 (FOXP1)				; oligos_6nt_mkv3_m4 versus MA0481.4 (FOXP1); m=28/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.41166; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 10463.0 1209.0 69603.0 65236.0 70030.0 1336.0 68456.0 0 0 0 0 c 0 0 0 0 1573.0 727.0 2095.0 5067.0 1487.0 61094.0 1904.0 0 0 0 0 g 0 0 0 0 59571.0 920.0 1073.0 1830.0 1132.0 1493.0 749.0 0 0 0 0 t 0 0 0 0 3111.0 71862.0 1947.0 2585.0 2069.0 10795.0 3609.0 0 0 0 0
MA0846.2_shift1 (FOXC2)				; oligos_6nt_mkv3_m4 versus MA0846.2 (FOXC2); m=29/30; ncol2=11; w=-4; offset=-4; strand=D; shift=1; score=0.407236; -wAwrTAAAYAw--- ; cor=; Ncor= a 0 8939.0 20456.0 11301.0 6418.0 2005.0 20456.0 20456.0 20456.0 31.0 20456.0 13296.0 0 0 0 c 0 1279.0 1652.0 3476.0 440.0 3773.0 6759.0 344.0 105.0 14435.0 101.0 2087.0 0 0 0 g 0 454.0 5093.0 3129.0 14038.0 321.0 87.0 81.0 279.0 68.0 328.0 1710.0 0 0 0 t 0 11517.0 2080.0 9155.0 136.0 20456.0 122.0 107.0 242.0 6021.0 215.0 7160.0 0 0 0
MA1487.3_shift0 (FOXE1)				; oligos_6nt_mkv3_m4 versus MA1487.3 (FOXE1); m=30/30; ncol2=12; w=-5; offset=-5; strand=D; shift=0; score=0.404554; yTAARyAAACAa--- ; cor=; Ncor= a 86.0 581.0 3126.0 2547.0 2255.0 587.0 3126.0 3126.0 3126.0 0.0 3126.0 2026.0 0 0 0 c 1646.0 43.0 28.0 113.0 117.0 1062.0 362.0 90.0 0.0 3126.0 32.0 392.0 0 0 0 g 57.0 0.0 402.0 116.0 871.0 17.0 0.0 0.0 23.0 0.0 18.0 258.0 0 0 0 t 1479.0 2545.0 43.0 579.0 27.0 2064.0 20.0 53.0 9.0 85.0 110.0 450.0 0 0 0