One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/results/discovered_motifs/oligos_7nt_mkv4_m1/peak-motifs_oligos_7nt_mkv4_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/results/discovered_motifs/oligos_7nt_mkv4_m1/peak-motifs_oligos_7nt_mkv4_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m1_shift1 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m1_shift1 (oligos_7nt_mkv4_m1)
; oligos_7nt_mkv4_m1; m=0 (reference); ncol1=11; shift=1; ncol=12; -wsTACAGTArw ; Alignment reference a 0 114 74 11 274 5 256 15 19 270 83 99 c 0 53 83 17 14 295 10 18 17 15 76 61 g 0 62 91 16 8 5 10 272 8 16 91 66 t 0 82 63 267 15 6 35 6 267 10 61 85

MA1580.1_shift1 (ZBTB32)
; oligos_7nt_mkv4_m1 versus MA1580.1 (ZBTB32); m=1/5; ncol2=10; w=0; offset=0; strand=D; shift=1; score=0.833394; -tGTACAGTaw- ; cor=; Ncor= a 0 882.0 356.0 5.0 3560.0 0.0 3556.0 0.0 0.0 2390.0 1559.0 0 c 0 764.0 3.0 1.0 5.0 3560.0 3.0 3.0 4.0 109.0 213.0 0 g 0 65.0 3057.0 3.0 0.0 1.0 4.0 3562.0 0.0 723.0 215.0 0 t 0 1849.0 156.0 3563.0 0.0 0.0 8.0 6.0 3558.0 339.0 1574.0 0

MA1542.2_rc_shift4 (OSR1_rc)
; oligos_7nt_mkv4_m1 versus MA1542.2_rc (OSR1_rc); m=2/5; ncol2=8; w=0; offset=3; strand=R; shift=4; score=0.588783; ----ACrGTAGC ; cor=; Ncor= a 0 0 0 0 4890.0 24.0 2787.0 0.0 444.0 4890.0 18.0 17.0 c 0 0 0 0 504.0 4890.0 5.0 0.0 38.0 0.0 0.0 4890.0 g 0 0 0 0 612.0 4.0 2103.0 4890.0 83.0 99.0 4890.0 235.0 t 0 0 0 0 407.0 62.0 0.0 10.0 4890.0 4.0 0.0 448.0

MA1585.2_shift4 (ZKSCAN1)
; oligos_7nt_mkv4_m1 versus MA1585.2 (ZKSCAN1); m=3/5; ncol2=9; w=0; offset=3; strand=D; shift=4; score=0.498329; ----AyAGTAGG ; cor=; Ncor= a 0 0 0 0 4633.0 187.0 6054.0 18.0 0.0 6079.0 12.0 13.0 c 0 0 0 0 456.0 2268.0 53.0 5.0 0.0 48.0 101.0 12.0 g 0 0 0 0 584.0 364.0 20.0 6092.0 0.0 0.0 5980.0 6075.0 t 0 0 0 0 454.0 3308.0 0.0 12.0 6127.0 0.0 34.0 27.0

MA1478.2_shift1 (DMRTA2)
; oligos_7nt_mkv4_m1 versus MA1478.2 (DMRTA2); m=4/5; ncol2=6; w=0; offset=0; strand=D; shift=1; score=0.434994; -GwTACA----- ; cor=; Ncor= a 0 0.0 727.0 578.0 1710.0 0.0 1710.0 0 0 0 0 0 c 0 1.0 527.0 147.0 9.0 1710.0 23.0 0 0 0 0 0 g 0 1710.0 10.0 29.0 71.0 0.0 78.0 0 0 0 0 0 t 0 6.0 983.0 1710.0 13.0 3.0 261.0 0 0 0 0 0

MA0610.2_rc_shift0 (DMRT3_rc)
; oligos_7nt_mkv4_m1 versus MA0610.2_rc (DMRT3_rc); m=5/5; ncol2=7; w=-1; offset=-1; strand=R; shift=0; score=0.410521; tGATACA----- ; cor=; Ncor= a 97.0 0.0 694.0 0.0 999.0 0.0 851.0 0 0 0 0 0 c 97.0 0.0 104.0 0.0 0.0 999.0 22.0 0 0 0 0 0 g 188.0 999.0 0.0 0.0 0.0 0.0 22.0 0 0 0 0 0 t 618.0 0.0 202.0 999.0 0.0 0.0 106.0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv4_m1_shift1 (oligos_7nt_mkv4_m1)				; oligos_7nt_mkv4_m1; m=0 (reference); ncol1=11; shift=1; ncol=12; -wsTACAGTArw ; Alignment reference a 0 114 74 11 274 5 256 15 19 270 83 99 c 0 53 83 17 14 295 10 18 17 15 76 61 g 0 62 91 16 8 5 10 272 8 16 91 66 t 0 82 63 267 15 6 35 6 267 10 61 85
MA1580.1_shift1 (ZBTB32)				; oligos_7nt_mkv4_m1 versus MA1580.1 (ZBTB32); m=1/5; ncol2=10; w=0; offset=0; strand=D; shift=1; score=0.833394; -tGTACAGTaw- ; cor=; Ncor= a 0 882.0 356.0 5.0 3560.0 0.0 3556.0 0.0 0.0 2390.0 1559.0 0 c 0 764.0 3.0 1.0 5.0 3560.0 3.0 3.0 4.0 109.0 213.0 0 g 0 65.0 3057.0 3.0 0.0 1.0 4.0 3562.0 0.0 723.0 215.0 0 t 0 1849.0 156.0 3563.0 0.0 0.0 8.0 6.0 3558.0 339.0 1574.0 0
MA1542.2_rc_shift4 (OSR1_rc)				; oligos_7nt_mkv4_m1 versus MA1542.2_rc (OSR1_rc); m=2/5; ncol2=8; w=0; offset=3; strand=R; shift=4; score=0.588783; ----ACrGTAGC ; cor=; Ncor= a 0 0 0 0 4890.0 24.0 2787.0 0.0 444.0 4890.0 18.0 17.0 c 0 0 0 0 504.0 4890.0 5.0 0.0 38.0 0.0 0.0 4890.0 g 0 0 0 0 612.0 4.0 2103.0 4890.0 83.0 99.0 4890.0 235.0 t 0 0 0 0 407.0 62.0 0.0 10.0 4890.0 4.0 0.0 448.0
MA1585.2_shift4 (ZKSCAN1)				; oligos_7nt_mkv4_m1 versus MA1585.2 (ZKSCAN1); m=3/5; ncol2=9; w=0; offset=3; strand=D; shift=4; score=0.498329; ----AyAGTAGG ; cor=; Ncor= a 0 0 0 0 4633.0 187.0 6054.0 18.0 0.0 6079.0 12.0 13.0 c 0 0 0 0 456.0 2268.0 53.0 5.0 0.0 48.0 101.0 12.0 g 0 0 0 0 584.0 364.0 20.0 6092.0 0.0 0.0 5980.0 6075.0 t 0 0 0 0 454.0 3308.0 0.0 12.0 6127.0 0.0 34.0 27.0
MA1478.2_shift1 (DMRTA2)				; oligos_7nt_mkv4_m1 versus MA1478.2 (DMRTA2); m=4/5; ncol2=6; w=0; offset=0; strand=D; shift=1; score=0.434994; -GwTACA----- ; cor=; Ncor= a 0 0.0 727.0 578.0 1710.0 0.0 1710.0 0 0 0 0 0 c 0 1.0 527.0 147.0 9.0 1710.0 23.0 0 0 0 0 0 g 0 1710.0 10.0 29.0 71.0 0.0 78.0 0 0 0 0 0 t 0 6.0 983.0 1710.0 13.0 3.0 261.0 0 0 0 0 0
MA0610.2_rc_shift0 (DMRT3_rc)				; oligos_7nt_mkv4_m1 versus MA0610.2_rc (DMRT3_rc); m=5/5; ncol2=7; w=-1; offset=-1; strand=R; shift=0; score=0.410521; tGATACA----- ; cor=; Ncor= a 97.0 0.0 694.0 0.0 999.0 0.0 851.0 0 0 0 0 0 c 97.0 0.0 104.0 0.0 0.0 999.0 22.0 0 0 0 0 0 g 188.0 999.0 0.0 0.0 0.0 0.0 22.0 0 0 0 0 0 t 618.0 0.0 202.0 999.0 0.0 0.0 106.0 0 0 0 0 0