One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m2_shift1 ; 14 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m2_shift1 (oligos_6nt_mkv3_m2)
; oligos_6nt_mkv3_m2; m=0 (reference); ncol1=10; shift=1; ncol=11; -mcACCACCas ; Alignment reference a 0 29 19 116 0 0 105 0 0 36 27 c 0 40 47 0 116 108 3 116 116 28 30 g 0 28 25 0 0 3 3 0 0 26 32 t 0 19 25 0 0 5 5 0 0 26 27

MA0694.2_shift1 (ZBTB7B)
; oligos_6nt_mkv3_m2 versus MA0694.2 (ZBTB7B); m=1/13; ncol2=10; w=0; offset=0; strand=D; shift=1; score=0.854728; -CGACCMCCga ; cor=; Ncor= a 0 144.0 394.0 1852.0 5.0 0.0 1852.0 5.0 0.0 803.0 1852.0 c 0 1852.0 19.0 238.0 1852.0 1852.0 820.0 1852.0 1852.0 474.0 295.0 g 0 224.0 1852.0 0.0 1.0 2.0 2.0 0.0 0.0 1852.0 221.0 t 0 54.0 78.0 3.0 0.0 0.0 3.0 1.0 7.0 305.0 365.0

MA1990.2_shift1 (Gli1)
; oligos_6nt_mkv3_m2 versus MA1990.2 (Gli1); m=2/13; ncol2=10; w=0; offset=0; strand=D; shift=1; score=0.790785; -rGACCACCCA ; cor=; Ncor= a 0 2124.0 113.0 3120.0 100.0 71.0 3653.0 38.0 559.0 153.0 3312.0 c 0 299.0 193.0 331.0 3744.0 3809.0 73.0 3827.0 3231.0 3566.0 188.0 g 0 1104.0 3535.0 498.0 88.0 74.0 87.0 75.0 145.0 110.0 251.0 t 0 476.0 162.0 54.0 71.0 49.0 190.0 63.0 68.0 174.0 252.0

MA0695.2_shift1 (ZBTB7C)
; oligos_6nt_mkv3_m2 versus MA0695.2 (ZBTB7C); m=3/13; ncol2=8; w=0; offset=0; strand=D; shift=1; score=0.740338; -cgACCACC-- ; cor=; Ncor= a 0 183.0 351.0 1018.0 39.0 0.0 1018.0 18.0 90.0 0 0 c 0 1018.0 128.0 225.0 1018.0 1018.0 269.0 1018.0 1018.0 0 0 g 0 215.0 1018.0 8.0 0.0 5.0 8.0 7.0 54.0 0 0 t 0 110.0 137.0 24.0 0.0 14.0 10.0 17.0 90.0 0 0

MA0734.4_shift2 (Gli2)
; oligos_6nt_mkv3_m2 versus MA0734.4 (Gli2); m=4/13; ncol2=9; w=0; offset=1; strand=D; shift=2; score=0.722435; --GACCACCCA ; cor=; Ncor= a 0 0 60.0 1920.0 44.0 8.0 2216.0 9.0 313.0 59.0 2101.0 c 0 0 96.0 227.0 2404.0 2464.0 40.0 2451.0 2145.0 2288.0 85.0 g 0 0 2251.0 337.0 27.0 13.0 82.0 12.0 20.0 77.0 193.0 t 0 0 85.0 8.0 17.0 7.0 154.0 20.0 14.0 68.0 113.0

MA1491.3_shift1 (GLI3)
; oligos_6nt_mkv3_m2 versus MA1491.3 (GLI3); m=5/13; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.521632; -rGACCACCCA ; cor=; Ncor= a 0 4051.0 9.0 8515.0 4.0 1.0 8515.0 1.0 727.0 29.0 8515.0 c 0 1748.0 3.0 365.0 8515.0 8515.0 236.0 8515.0 7788.0 8515.0 2.0 g 0 4464.0 8515.0 376.0 0.0 1.0 9.0 0.0 1.0 1.0 53.0 t 0 403.0 96.0 1.0 0.0 1.0 88.0 1.0 1.0 17.0 2.0

MA0103.4_shift5 (ZEB1)
; oligos_6nt_mkv3_m2 versus MA0103.4 (ZEB1); m=6/13; ncol2=6; w=0; offset=4; strand=D; shift=5; score=0.490629; -----CACCTG ; cor=; Ncor= a 0 0 0 0 0 114.0 19905.0 32.0 193.0 4.0 441.0 c 0 0 0 0 0 19195.0 0.0 19878.0 19257.0 501.0 178.0 g 0 0 0 0 0 158.0 223.0 97.0 649.0 355.0 19381.0 t 0 0 0 0 0 662.0 1.0 122.0 30.0 19269.0 129.0

MA0130.1_shift2 (ZNF354C)
; oligos_6nt_mkv3_m2 versus MA0130.1 (ZNF354C); m=7/13; ncol2=6; w=0; offset=1; strand=D; shift=2; score=0.484757; --mTCCAC--- ; cor=; Ncor= a 0 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 c 0 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 g 0 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 t 0 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0

MA0820.2_shift5 (FIGLA)
; oligos_6nt_mkv3_m2 versus MA0820.2 (FIGLA); m=8/13; ncol2=6; w=0; offset=4; strand=D; shift=5; score=0.465542; -----CACCTG ; cor=; Ncor= a 0 0 0 0 0 0.0 1780.0 0.0 9.0 56.0 36.0 c 0 0 0 0 0 1780.0 46.0 1780.0 1780.0 0.0 33.0 g 0 0 0 0 0 0.0 0.0 527.0 311.0 17.0 1780.0 t 0 0 0 0 0 29.0 14.0 0.0 0.0 1780.0 65.0

MA0522.4_shift5 (TCF3)
; oligos_6nt_mkv3_m2 versus MA0522.4 (TCF3); m=9/13; ncol2=7; w=0; offset=4; strand=D; shift=5; score=0.445613; -----CACCTG ; cor=; Ncor= a 0 0 0 0 0 469.0 28916.0 309.0 1127.0 380.0 1089.0 c 0 0 0 0 0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 g 0 0 0 0 0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 t 0 0 0 0 0 705.0 375.0 950.0 283.0 27539.0 492.0

MA1648.2_shift5 (TCF12)
; oligos_6nt_mkv3_m2 versus MA1648.2 (TCF12); m=10/13; ncol2=7; w=0; offset=4; strand=D; shift=5; score=0.44532; -----CACCTG ; cor=; Ncor= a 0 0 0 0 0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 c 0 0 0 0 0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 g 0 0 0 0 0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 t 0 0 0 0 0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0

MA1558.2_rc_shift5 (SNAI1_rc)
; oligos_6nt_mkv3_m2 versus MA1558.2_rc (SNAI1_rc); m=11/13; ncol2=7; w=0; offset=4; strand=R; shift=5; score=0.443624; -----CACCTG ; cor=; Ncor= a 0 0 0 0 0 311.0 19982.0 28.0 306.0 568.0 340.0 c 0 0 0 0 0 19982.0 42.0 19982.0 19982.0 91.0 275.0 g 0 0 0 0 0 0.0 0.0 5.0 517.0 297.0 19982.0 t 0 0 0 0 0 706.0 38.0 72.0 1766.0 19982.0 446.0

MA0751.2_shift2 (ZIC4)
; oligos_6nt_mkv3_m2 versus MA0751.2 (ZIC4); m=12/13; ncol2=14; w=0; offset=1; strand=D; shift=2; score=0.428353; --krCCCCCyG ; cor=; Ncor= a 0 0 578.0 3013.0 315.0 209.0 614.0 8.0 114.0 24.0 1095.0 c 0 0 934.0 812.0 2870.0 2890.0 2757.0 2999.0 2985.0 2222.0 68.0 g 0 0 4126.0 1553.0 52.0 121.0 225.0 0.0 0.0 6.0 4795.0 t 0 0 1887.0 21.0 98.0 147.0 275.0 1.0 11.0 1078.0 69.0

MA2324.1_shift0 (BCL11A)
; oligos_6nt_mkv3_m2 versus MA2324.1 (BCL11A); m=13/13; ncol2=7; w=-1; offset=-1; strand=D; shift=0; score=0.410922; CTGACCA---- ; cor=; Ncor= a 343.0 180.0 125.0 5724.0 155.0 143.0 4495.0 0 0 0 0 c 5024.0 120.0 281.0 92.0 5855.0 5964.0 641.0 0 0 0 0 g 591.0 165.0 5747.0 100.0 141.0 55.0 385.0 0 0 0 0 t 307.0 5800.0 112.0 349.0 114.0 103.0 744.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m1_shift1 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m1_shift1 (oligos_7nt_mkv4_m1)
; oligos_7nt_mkv4_m1; m=0 (reference); ncol1=11; shift=1; ncol=12; -wsTACAGTArw ; Alignment reference a 0 114 74 11 274 5 256 15 19 270 83 99 c 0 53 83 17 14 295 10 18 17 15 76 61 g 0 62 91 16 8 5 10 272 8 16 91 66 t 0 82 63 267 15 6 35 6 267 10 61 85

MA1580.1_shift1 (ZBTB32)
; oligos_7nt_mkv4_m1 versus MA1580.1 (ZBTB32); m=1/5; ncol2=10; w=0; offset=0; strand=D; shift=1; score=0.833394; -tGTACAGTaw- ; cor=; Ncor= a 0 882.0 356.0 5.0 3560.0 0.0 3556.0 0.0 0.0 2390.0 1559.0 0 c 0 764.0 3.0 1.0 5.0 3560.0 3.0 3.0 4.0 109.0 213.0 0 g 0 65.0 3057.0 3.0 0.0 1.0 4.0 3562.0 0.0 723.0 215.0 0 t 0 1849.0 156.0 3563.0 0.0 0.0 8.0 6.0 3558.0 339.0 1574.0 0

MA1542.2_rc_shift4 (OSR1_rc)
; oligos_7nt_mkv4_m1 versus MA1542.2_rc (OSR1_rc); m=2/5; ncol2=8; w=0; offset=3; strand=R; shift=4; score=0.588783; ----ACrGTAGC ; cor=; Ncor= a 0 0 0 0 4890.0 24.0 2787.0 0.0 444.0 4890.0 18.0 17.0 c 0 0 0 0 504.0 4890.0 5.0 0.0 38.0 0.0 0.0 4890.0 g 0 0 0 0 612.0 4.0 2103.0 4890.0 83.0 99.0 4890.0 235.0 t 0 0 0 0 407.0 62.0 0.0 10.0 4890.0 4.0 0.0 448.0

MA1585.2_shift4 (ZKSCAN1)
; oligos_7nt_mkv4_m1 versus MA1585.2 (ZKSCAN1); m=3/5; ncol2=9; w=0; offset=3; strand=D; shift=4; score=0.498329; ----AyAGTAGG ; cor=; Ncor= a 0 0 0 0 4633.0 187.0 6054.0 18.0 0.0 6079.0 12.0 13.0 c 0 0 0 0 456.0 2268.0 53.0 5.0 0.0 48.0 101.0 12.0 g 0 0 0 0 584.0 364.0 20.0 6092.0 0.0 0.0 5980.0 6075.0 t 0 0 0 0 454.0 3308.0 0.0 12.0 6127.0 0.0 34.0 27.0

MA1478.2_shift1 (DMRTA2)
; oligos_7nt_mkv4_m1 versus MA1478.2 (DMRTA2); m=4/5; ncol2=6; w=0; offset=0; strand=D; shift=1; score=0.434994; -GwTACA----- ; cor=; Ncor= a 0 0.0 727.0 578.0 1710.0 0.0 1710.0 0 0 0 0 0 c 0 1.0 527.0 147.0 9.0 1710.0 23.0 0 0 0 0 0 g 0 1710.0 10.0 29.0 71.0 0.0 78.0 0 0 0 0 0 t 0 6.0 983.0 1710.0 13.0 3.0 261.0 0 0 0 0 0

MA0610.2_rc_shift0 (DMRT3_rc)
; oligos_7nt_mkv4_m1 versus MA0610.2_rc (DMRT3_rc); m=5/5; ncol2=7; w=-1; offset=-1; strand=R; shift=0; score=0.410521; tGATACA----- ; cor=; Ncor= a 97.0 0.0 694.0 0.0 999.0 0.0 851.0 0 0 0 0 0 c 97.0 0.0 104.0 0.0 0.0 999.0 22.0 0 0 0 0 0 g 188.0 999.0 0.0 0.0 0.0 0.0 22.0 0 0 0 0 0 t 618.0 0.0 202.0 999.0 0.0 0.0 106.0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m1_shift3 ; 104 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m1_shift3 (oligos_6nt_mkv3_m1)
; oligos_6nt_mkv3_m1; m=0 (reference); ncol1=10; shift=3; ncol=13; ---waTAATTAtw ; Alignment reference a 0 0 0 63 94 7 152 163 11 32 168 39 65 c 0 0 0 30 19 1 0 4 6 0 7 32 27 g 0 0 0 28 31 6 0 6 2 0 1 19 28 t 0 0 0 63 40 170 32 11 165 152 8 94 64

MA1518.3_rc_shift3 (Lhx1_rc)
; oligos_6nt_mkv3_m1 versus MA1518.3_rc (Lhx1_rc); m=1/103; ncol2=10; w=0; offset=0; strand=R; shift=3; score=0.80789; ---gcTAATTAgc ; cor=; Ncor= a 0 0 0 45.0 36.0 13.0 407.0 438.0 10.0 3.0 411.0 91.0 74.0 c 0 0 0 59.0 260.0 24.0 28.0 1.0 5.0 16.0 6.0 65.0 276.0 g 0 0 0 276.0 64.0 5.0 16.0 5.0 2.0 30.0 24.0 260.0 58.0 t 0 0 0 74.0 94.0 412.0 3.0 10.0 437.0 405.0 13.0 38.0 46.0

MA0703.3_shift4 (LMX1B)
; oligos_6nt_mkv3_m1 versus MA0703.3 (LMX1B); m=2/103; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.713179; ----TTAATTAa- ; cor=; Ncor= a 0 0 0 0 0.0 0.0 4064.0 4064.0 0.0 0.0 4064.0 2319.0 0 c 0 0 0 0 599.0 0.0 0.0 0.0 0.0 0.0 12.0 785.0 0 g 0 0 0 0 190.0 0.0 0.0 0.0 0.0 0.0 0.0 350.0 0 t 0 0 0 0 3465.0 4064.0 0.0 0.0 4064.0 4064.0 0.0 609.0 0

MA0854.2_shift4 (Alx1)
; oligos_6nt_mkv3_m1 versus MA0854.2 (Alx1); m=3/103; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.705426; ----yTAATTAr- ; cor=; Ncor= a 0 0 0 0 5.0 1.0 98.0 98.0 1.0 0.0 92.0 53.0 0 c 0 0 0 0 40.0 7.0 0.0 0.0 1.0 1.0 0.0 2.0 0 g 0 0 0 0 2.0 0.0 1.0 1.0 0.0 0.0 7.0 40.0 0 t 0 0 0 0 53.0 92.0 0.0 1.0 98.0 98.0 1.0 5.0 0

MA0658.2_rc_shift4 (LHX6_rc)
; oligos_6nt_mkv3_m1 versus MA0658.2_rc (LHX6_rc); m=4/103; ncol2=8; w=0; offset=1; strand=R; shift=4; score=0.704761; ----yTAATTAg- ; cor=; Ncor= a 0 0 0 0 194.0 2.0 4438.0 4438.0 0.0 0.0 4438.0 1422.0 0 c 0 0 0 0 2769.0 243.0 108.0 15.0 0.0 487.0 28.0 791.0 0 g 0 0 0 0 637.0 0.0 766.0 98.0 14.0 90.0 253.0 3015.0 0 t 0 0 0 0 1668.0 4438.0 0.0 0.0 4438.0 4438.0 0.0 529.0 0

MA1463.2_rc_shift4 (ARGFX_rc)
; oligos_6nt_mkv3_m1 versus MA1463.2_rc (ARGFX_rc); m=5/103; ncol2=8; w=0; offset=1; strand=R; shift=4; score=0.697968; ----yTAATTAg- ; cor=; Ncor= a 0 0 0 0 900.0 1048.0 16589.0 16589.0 0.0 4.0 16589.0 4423.0 0 c 0 0 0 0 6249.0 1492.0 0.0 0.0 0.0 0.0 96.0 1748.0 0 g 0 0 0 0 563.0 499.0 44.0 0.0 0.0 46.0 1130.0 16589.0 0 t 0 0 0 0 10340.0 16589.0 0.0 0.0 16589.0 16589.0 270.0 2558.0 0

MA0874.2_shift2 (Arx)
; oligos_6nt_mkv3_m1 versus MA0874.2 (Arx); m=6/103; ncol2=10; w=-1; offset=-1; strand=D; shift=2; score=0.688168; --cryTAATTAr- ; cor=; Ncor= a 0 0 22.0 50.0 1.0 1.0 98.0 99.0 1.0 1.0 86.0 60.0 0 c 0 0 56.0 6.0 38.0 13.0 0.0 0.0 1.0 0.0 0.0 1.0 0 g 0 0 13.0 38.0 1.0 0.0 0.0 1.0 0.0 0.0 13.0 38.0 0 t 0 0 10.0 7.0 60.0 86.0 1.0 1.0 99.0 98.0 1.0 1.0 0

MA0912.2_shift4 (HOXD3)
; oligos_6nt_mkv3_m1 versus MA0912.2 (HOXD3); m=7/103; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.675157; ----CTAATTAc- ; cor=; Ncor= a 0 0 0 0 276.0 0.0 14562.0 14562.0 0.0 0.0 14562.0 714.0 0 c 0 0 0 0 11615.0 94.0 742.0 0.0 0.0 0.0 0.0 8987.0 0 g 0 0 0 0 827.0 0.0 0.0 0.0 0.0 4453.0 2198.0 3187.0 0 t 0 0 0 0 2947.0 14562.0 0.0 0.0 14562.0 14562.0 0.0 1674.0 0

MA0135.2_shift1 (Lhx3)
; oligos_6nt_mkv3_m1 versus MA0135.2 (Lhx3); m=8/103; ncol2=12; w=-2; offset=-2; strand=D; shift=1; score=0.675005; -wAATTAATTAwy ; cor=; Ncor= a 0 9.0 16.0 19.0 0.0 0.0 19.0 20.0 2.0 0.0 16.0 9.0 2.0 c 0 0.0 2.0 0.0 0.0 0.0 0.0 0.0 2.0 1.0 1.0 0.0 8.0 g 0 3.0 2.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 3.0 0.0 t 0 8.0 0.0 1.0 20.0 20.0 1.0 0.0 16.0 19.0 3.0 8.0 10.0

MA0068.2_rc_shift4 (PAX4_rc)
; oligos_6nt_mkv3_m1 versus MA0068.2_rc (PAX4_rc); m=9/103; ncol2=8; w=0; offset=1; strand=R; shift=4; score=0.667543; ----cTAATTag- ; cor=; Ncor= a 0 0 0 0 41.0 12.0 333.0 333.0 0.0 3.0 333.0 105.0 0 c 0 0 0 0 333.0 11.0 10.0 5.0 0.0 0.0 120.0 47.0 0 g 0 0 0 0 93.0 89.0 11.0 0.0 0.0 2.0 30.0 333.0 0 t 0 0 0 0 150.0 333.0 18.0 0.0 333.0 333.0 58.0 37.0 0

MA0621.2_shift4 (mix-a)
; oligos_6nt_mkv3_m1 versus MA0621.2 (mix-a); m=10/103; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.661644; ----tTAATTA-- ; cor=; Ncor= a 0 0 0 0 130.0 0.0 1000.0 1000.0 0.0 0.0 938.0 0 0 c 0 0 0 0 146.0 0.0 0.0 0.0 0.0 0.0 21.0 0 0 g 0 0 0 0 46.0 0.0 0.0 0.0 0.0 0.0 21.0 0 0 t 0 0 0 0 679.0 1000.0 0.0 0.0 1000.0 1000.0 21.0 0 0

MA0158.2_rc_shift4 (HOXA5_rc)
; oligos_6nt_mkv3_m1 versus MA0158.2_rc (HOXA5_rc); m=11/103; ncol2=8; w=0; offset=1; strand=R; shift=4; score=0.652445; ----sTAATkrs- ; cor=; Ncor= a 0 0 0 0 54.0 0.0 3130.0 3130.0 0.0 0.0 2078.0 397.0 0 c 0 0 0 0 1133.0 0.0 885.0 0.0 0.0 81.0 0.0 1759.0 0 g 0 0 0 0 1463.0 0.0 0.0 0.0 0.0 1632.0 1052.0 832.0 0 t 0 0 0 0 480.0 3130.0 0.0 0.0 3130.0 3130.0 0.0 142.0 0

MA0702.3_shift4 (LMX1A)
; oligos_6nt_mkv3_m1 versus MA0702.3 (LMX1A); m=12/103; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.65001; ----yTAATTA-- ; cor=; Ncor= a 0 0 0 0 90.0 0.0 7355.0 7355.0 0.0 0.0 7355.0 0 0 c 0 0 0 0 2222.0 31.0 0.0 9.0 50.0 0.0 102.0 0 0 g 0 0 0 0 305.0 19.0 0.0 0.0 0.0 0.0 501.0 0 0 t 0 0 0 0 5133.0 7355.0 0.0 0.0 7355.0 7355.0 0.0 0 0

MA1519.2_rc_shift5 (LHX5_rc)
; oligos_6nt_mkv3_m1 versus MA1519.2_rc (LHX5_rc); m=13/103; ncol2=7; w=0; offset=2; strand=R; shift=5; score=0.642197; -----TAATTRs- ; cor=; Ncor= a 0 0 0 0 0 0.0 7142.0 7142.0 0.0 0.0 5049.0 1215.0 0 c 0 0 0 0 0 160.0 28.0 0.0 0.0 0.0 0.0 3721.0 0 g 0 0 0 0 0 0.0 144.0 0.0 0.0 187.0 2093.0 3420.0 0 t 0 0 0 0 0 7142.0 0.0 0.0 7142.0 7142.0 0.0 394.0 0

MA0661.2_rc_shift5 (MEOX1_rc)
; oligos_6nt_mkv3_m1 versus MA0661.2_rc (MEOX1_rc); m=14/103; ncol2=7; w=0; offset=2; strand=R; shift=5; score=0.634142; -----TAATTAs- ; cor=; Ncor= a 0 0 0 0 0 6.0 3000.0 3000.0 3.0 39.0 3000.0 115.0 0 c 0 0 0 0 0 338.0 328.0 0.0 2.0 151.0 53.0 1363.0 0 g 0 0 0 0 0 0.0 242.0 29.0 0.0 848.0 406.0 1637.0 0 t 0 0 0 0 0 3000.0 14.0 8.0 3000.0 3000.0 64.0 150.0 0

MA0075.4_rc_shift5 (PRRX2_rc)
; oligos_6nt_mkv3_m1 versus MA0075.4_rc (PRRX2_rc); m=15/103; ncol2=7; w=0; offset=2; strand=R; shift=5; score=0.633075; -----TAATTrg- ; cor=; Ncor= a 0 0 0 0 0 0.0 6720.0 6720.0 0.0 0.0 4711.0 1933.0 0 c 0 0 0 0 0 399.0 0.0 0.0 0.0 3.0 131.0 1613.0 0 g 0 0 0 0 0 1.0 0.0 0.0 0.0 29.0 2008.0 6720.0 0 t 0 0 0 0 0 6720.0 0.0 0.0 6720.0 6720.0 122.0 778.0 0

MA0722.2_shift4 (VAX1)
; oligos_6nt_mkv3_m1 versus MA0722.2 (VAX1); m=16/103; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.631585; ----yTAATtA-- ; cor=; Ncor= a 0 0 0 0 447.0 679.0 5253.0 5253.0 297.0 508.0 5253.0 0 0 c 0 0 0 0 2775.0 995.0 863.0 153.0 86.0 321.0 87.0 0 0 g 0 0 0 0 455.0 101.0 189.0 46.0 213.0 1951.0 1332.0 0 0 t 0 0 0 0 2479.0 5253.0 302.0 133.0 5253.0 5253.0 398.0 0 0

MA0706.2_rc_shift5 (MEOX2_rc)
; oligos_6nt_mkv3_m1 versus MA0706.2_rc (MEOX2_rc); m=17/103; ncol2=7; w=0; offset=2; strand=R; shift=5; score=0.630057; -----TaATtAs- ; cor=; Ncor= a 0 0 0 0 0 1032.0 23930.0 23930.0 492.0 900.0 23930.0 2754.0 0 c 0 0 0 0 0 4099.0 4974.0 169.0 272.0 3016.0 642.0 14987.0 0 g 0 0 0 0 0 359.0 6039.0 38.0 788.0 8988.0 5055.0 8942.0 0 t 0 0 0 0 0 23930.0 1152.0 76.0 23930.0 23930.0 1469.0 3262.0 0

MA0674.2_rc_shift4 (NKX6-1_rc)
; oligos_6nt_mkv3_m1 versus MA0674.2_rc (NKX6-1_rc); m=18/103; ncol2=7; w=0; offset=1; strand=R; shift=4; score=0.629925; ----tTAATkR-- ; cor=; Ncor= a 0 0 0 0 327.0 17.0 2212.0 2212.0 40.0 195.0 1640.0 0 0 c 0 0 0 0 142.0 132.0 0.0 0.0 12.0 0.0 0.0 0 0 g 0 0 0 0 294.0 27.0 45.0 0.0 200.0 805.0 573.0 0 0 t 0 0 0 0 1450.0 2212.0 58.0 0.0 2212.0 1407.0 0.0 0 0

MA0726.2_shift4 (VSX2)
; oligos_6nt_mkv3_m1 versus MA0726.2 (VSX2); m=19/103; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.628861; ----yTAATTA-- ; cor=; Ncor= a 0 0 0 0 427.0 1080.0 13809.0 13809.0 118.0 626.0 13809.0 0 0 c 0 0 0 0 9554.0 2725.0 397.0 124.0 186.0 567.0 321.0 0 0 g 0 0 0 0 445.0 363.0 343.0 123.0 92.0 447.0 2109.0 0 0 t 0 0 0 0 4255.0 13809.0 402.0 63.0 13809.0 13809.0 1014.0 0 0

MA0725.2_shift4 (VSX1)
; oligos_6nt_mkv3_m1 versus MA0725.2 (VSX1); m=20/103; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.628337; ----yTAATTA-- ; cor=; Ncor= a 0 0 0 0 756.0 1836.0 13572.0 13572.0 172.0 898.0 13572.0 0 0 c 0 0 0 0 8453.0 3131.0 626.0 154.0 199.0 761.0 516.0 0 0 g 0 0 0 0 561.0 572.0 553.0 172.0 103.0 984.0 3337.0 0 0 t 0 0 0 0 5119.0 13572.0 554.0 90.0 13572.0 13572.0 1372.0 0 0

MA0790.2_shift1 (POU4F1)
; oligos_6nt_mkv3_m1 versus MA0790.2 (POU4F1); m=21/103; ncol2=12; w=-2; offset=-2; strand=D; shift=1; score=0.626749; -TgmATwATTaAT ; cor=; Ncor= a 0 153.0 1032.0 1720.0 2950.0 91.0 2811.0 2915.0 465.0 390.0 2825.0 3181.0 276.0 c 0 236.0 376.0 1661.0 47.0 15.0 102.0 124.0 106.0 72.0 668.0 36.0 359.0 g 0 125.0 3857.0 29.0 25.0 15.0 145.0 144.0 129.0 262.0 696.0 54.0 220.0 t 0 3553.0 750.0 76.0 139.0 3511.0 1316.0 638.0 3201.0 3218.0 1116.0 15.0 3102.0

MA0791.2_shift1 (POU4F3)
; oligos_6nt_mkv3_m1 versus MA0791.2 (POU4F3); m=22/103; ncol2=12; w=-2; offset=-2; strand=D; shift=1; score=0.626563; -TgmATwATTaAT ; cor=; Ncor= a 0 292.0 1067.0 1868.0 3264.0 96.0 3041.0 3106.0 433.0 479.0 3100.0 3447.0 212.0 c 0 321.0 374.0 2014.0 42.0 21.0 126.0 121.0 101.0 66.0 651.0 19.0 355.0 g 0 303.0 4723.0 24.0 36.0 25.0 133.0 126.0 166.0 194.0 789.0 25.0 180.0 t 0 4134.0 1067.0 69.0 132.0 4004.0 1579.0 658.0 3805.0 3728.0 868.0 22.0 3774.0

MA2119.1_rc_shift5 (HOXA3_rc)
; oligos_6nt_mkv3_m1 versus MA2119.1_rc (HOXA3_rc); m=23/103; ncol2=7; w=0; offset=2; strand=R; shift=5; score=0.624893; -----TAATKAs- ; cor=; Ncor= a 0 0 0 0 0 0.0 2540.0 2540.0 0.0 0.0 2540.0 138.0 0 c 0 0 0 0 0 361.0 517.0 0.0 0.0 10.0 0.0 1294.0 0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 1022.0 502.0 1246.0 0 t 0 0 0 0 0 2540.0 0.0 0.0 2540.0 2540.0 0.0 93.0 0

MA0644.3_rc_shift5 (ESX1_rc)
; oligos_6nt_mkv3_m1 versus MA0644.3_rc (ESX1_rc); m=24/103; ncol2=7; w=0; offset=2; strand=R; shift=5; score=0.624521; -----TAATTrr- ; cor=; Ncor= a 0 0 0 0 0 557.0 19670.0 19670.0 0.0 181.0 12075.0 7690.0 0 c 0 0 0 0 0 925.0 225.0 0.0 0.0 821.0 0.0 2110.0 0 g 0 0 0 0 0 0.0 1009.0 0.0 95.0 634.0 7595.0 11980.0 0 t 0 0 0 0 0 19670.0 47.0 0.0 19670.0 19670.0 589.0 1070.0 0

MA0701.3_rc_shift5 (LHX9_rc)
; oligos_6nt_mkv3_m1 versus MA0701.3_rc (LHX9_rc); m=25/103; ncol2=7; w=0; offset=2; strand=R; shift=5; score=0.61753; -----TAATTrG- ; cor=; Ncor= a 0 0 0 0 0 0.0 6075.0 6075.0 0.0 20.0 3983.0 1219.0 0 c 0 0 0 0 0 305.0 170.0 0.0 0.0 0.0 0.0 1056.0 0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 505.0 2093.0 6075.0 0 t 0 0 0 0 0 6075.0 0.0 0.0 6075.0 6075.0 0.0 390.0 0

MA2093.1_rc_shift5 (HOXB1_rc)
; oligos_6nt_mkv3_m1 versus MA2093.1_rc (HOXB1_rc); m=26/103; ncol2=7; w=0; offset=2; strand=R; shift=5; score= 0.6132; -----TAATTAs- ; cor=; Ncor= a 0 0 0 0 0 0.0 2003.0 2003.0 0.0 0.0 2003.0 0.0 0 c 0 0 0 0 0 633.0 262.0 1.0 0.0 307.0 0.0 1298.0 0 g 0 0 0 0 0 47.0 253.0 0.0 0.0 450.0 412.0 705.0 0 t 0 0 0 0 0 2003.0 0.0 0.0 2003.0 2003.0 0.0 71.0 0

MA0710.2_rc_shift5 (NOTO_rc)
; oligos_6nt_mkv3_m1 versus MA0710.2_rc (NOTO_rc); m=27/103; ncol2=7; w=0; offset=2; strand=R; shift=5; score=0.611281; -----TAATKar- ; cor=; Ncor= a 0 0 0 0 0 1904.0 21405.0 21405.0 0.0 139.0 21405.0 7419.0 0 c 0 0 0 0 0 2057.0 422.0 0.0 0.0 0.0 573.0 617.0 0 g 0 0 0 0 0 0.0 62.0 0.0 0.0 6310.0 4001.0 13986.0 0 t 0 0 0 0 0 21405.0 374.0 0.0 21405.0 15096.0 7097.0 774.0 0

MA0889.2_rc_shift5 (GBX1_rc)
; oligos_6nt_mkv3_m1 versus MA0889.2_rc (GBX1_rc); m=28/103; ncol2=7; w=0; offset=2; strand=R; shift=5; score=0.610217; -----TAATTrs- ; cor=; Ncor= a 0 0 0 0 0 321.0 27339.0 27339.0 23.0 157.0 13796.0 3723.0 0 c 0 0 0 0 0 8.0 246.0 1.0 29.0 758.0 15.0 6964.0 0 g 0 0 0 0 0 50.0 438.0 128.0 172.0 589.0 13543.0 14978.0 0 t 0 0 0 0 0 27339.0 312.0 45.0 27339.0 27339.0 243.0 1674.0 0

MA1497.2_rc_shift5 (HOXA6_rc)
; oligos_6nt_mkv3_m1 versus MA1497.2_rc (HOXA6_rc); m=29/103; ncol2=7; w=0; offset=2; strand=R; shift=5; score=0.60249; -----TAATkrc- ; cor=; Ncor= a 0 0 0 0 0 663.0 7201.0 7201.0 11.0 1482.0 4234.0 1605.0 0 c 0 0 0 0 0 502.0 553.0 0.0 908.0 833.0 100.0 7201.0 0 g 0 0 0 0 0 94.0 233.0 0.0 745.0 3768.0 2967.0 1725.0 0 t 0 0 0 0 0 7201.0 1911.0 0.0 7201.0 7201.0 87.0 1337.0 0

MA0618.2_shift5 (LBX1)
; oligos_6nt_mkv3_m1 versus MA0618.2 (LBX1); m=30/103; ncol2=7; w=0; offset=2; strand=D; shift=5; score=0.597331; -----TAAYTRG- ; cor=; Ncor= a 0 0 0 0 0 0.0 999.0 999.0 0.0 143.0 731.0 29.0 0 c 0 0 0 0 0 49.0 0.0 0.0 262.0 0.0 0.0 114.0 0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 119.0 268.0 799.0 0 t 0 0 0 0 0 951.0 0.0 0.0 738.0 738.0 0.0 57.0 0

MA0853.2_shift0 (Alx4)
; oligos_6nt_mkv3_m1 versus MA0853.2 (Alx4); m=31/103; ncol2=12; w=-3; offset=-3; strand=D; shift=0; score=0.595645; cgcryTAATTAr- ; cor=; Ncor= a 16.0 10.0 19.0 40.0 2.0 1.0 99.0 98.0 1.0 0.0 92.0 62.0 0 c 59.0 24.0 44.0 15.0 34.0 8.0 1.0 0.0 1.0 1.0 0.0 1.0 0 g 15.0 56.0 16.0 29.0 1.0 0.0 1.0 1.0 0.0 1.0 8.0 34.0 0 t 11.0 10.0 21.0 16.0 62.0 92.0 0.0 1.0 98.0 99.0 1.0 2.0 0

MA0628.2_shift5 (POU6F1)
; oligos_6nt_mkv3_m1 versus MA0628.2 (POU6F1); m=32/103; ncol2=6; w=0; offset=2; strand=D; shift=5; score=0.594227; -----TAATTA-- ; cor=; Ncor= a 0 0 0 0 0 32.0 905.0 938.0 14.0 18.0 950.0 0 0 c 0 0 0 0 0 10.0 70.0 34.0 14.0 8.0 8.0 0 0 g 0 0 0 0 0 8.0 8.0 14.0 34.0 70.0 10.0 0 0 t 0 0 0 0 0 950.0 18.0 14.0 938.0 905.0 32.0 0 0

MA0893.3_rc_shift5 (GSX2_rc)
; oligos_6nt_mkv3_m1 versus MA0893.3_rc (GSX2_rc); m=33/103; ncol2=7; w=0; offset=2; strand=R; shift=5; score=0.593692; -----TAATkrs- ; cor=; Ncor= a 0 0 0 0 0 20.0 4998.0 4998.0 0.0 29.0 4998.0 0.0 0 c 0 0 0 0 0 1005.0 77.0 0.0 708.0 95.0 400.0 2721.0 0 g 0 0 0 0 0 0.0 0.0 121.0 0.0 2223.0 2611.0 2277.0 0 t 0 0 0 0 0 4998.0 0.0 0.0 4998.0 2775.0 503.0 816.0 0

MA1501.2_rc_shift5 (HOXB7_rc)
; oligos_6nt_mkv3_m1 versus MA1501.2_rc (HOXB7_rc); m=34/103; ncol2=7; w=0; offset=2; strand=R; shift=5; score=0.590978; -----TAATTrC- ; cor=; Ncor= a 0 0 0 0 0 0.0 828.0 828.0 0.0 0.0 828.0 87.0 0 c 0 0 0 0 0 151.0 0.0 31.0 0.0 0.0 51.0 828.0 0 g 0 0 0 0 0 0.0 3.0 0.0 29.0 222.0 359.0 0.0 0 t 0 0 0 0 0 828.0 79.0 0.0 828.0 828.0 0.0 0.0 0

MA1496.2_rc_shift5 (HOXA4_rc)
; oligos_6nt_mkv3_m1 versus MA1496.2_rc (HOXA4_rc); m=35/103; ncol2=7; w=0; offset=2; strand=R; shift=5; score=0.58813; -----TAATkRy- ; cor=; Ncor= a 0 0 0 0 0 0.0 2454.0 2454.0 0.0 0.0 2454.0 94.0 0 c 0 0 0 0 0 260.0 171.0 39.0 684.0 176.0 0.0 1365.0 0 g 0 0 0 0 0 146.0 173.0 0.0 0.0 1561.0 967.0 397.0 0 t 0 0 0 0 0 2454.0 0.0 0.0 2454.0 893.0 0.0 1089.0 0

MA0886.2_rc_shift5 (EMX2_rc)
; oligos_6nt_mkv3_m1 versus MA0886.2_rc (EMX2_rc); m=36/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.585556; -----TAATTA-- ; cor=; Ncor= a 0 0 0 0 0 0.0 37262.0 37262.0 0.0 1236.0 29501.0 0 0 c 0 0 0 0 0 0.0 4025.0 0.0 0.0 678.0 0.0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 4938.0 7761.0 0 0 t 0 0 0 0 0 37262.0 0.0 0.0 37262.0 37262.0 834.0 0 0

MA0612.3_rc_shift5 (EMX1_rc)
; oligos_6nt_mkv3_m1 versus MA0612.3_rc (EMX1_rc); m=37/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.583476; -----TAATTA-- ; cor=; Ncor= a 0 0 0 0 0 0.0 9544.0 9544.0 0.0 0.0 7281.0 0 0 c 0 0 0 0 0 0.0 933.0 0.0 0.0 0.0 0.0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 1235.0 2263.0 0 0 t 0 0 0 0 0 9544.0 0.0 0.0 9544.0 9544.0 19.0 0 0

MA1500.2_shift5 (HOXB6)
; oligos_6nt_mkv3_m1 versus MA1500.2 (HOXB6); m=38/103; ncol2=7; w=0; offset=2; strand=D; shift=5; score=0.583349; -----TAATkrc- ; cor=; Ncor= a 0 0 0 0 0 0.0 6192.0 6192.0 0.0 403.0 3128.0 691.0 0 c 0 0 0 0 0 710.0 647.0 0.0 436.0 926.0 0.0 4868.0 0 g 0 0 0 0 0 0.0 0.0 0.0 727.0 4139.0 3064.0 996.0 0 t 0 0 0 0 0 6192.0 564.0 0.0 6192.0 6192.0 0.0 1324.0 0

MA0900.3_rc_shift5 (HOXA2_rc)
; oligos_6nt_mkv3_m1 versus MA0900.3_rc (HOXA2_rc); m=39/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.581928; -----TAATKA-- ; cor=; Ncor= a 0 0 0 0 0 0.0 56949.0 56949.0 0.0 0.0 56949.0 0 0 c 0 0 0 0 0 2052.0 0.0 0.0 0.0 290.0 0.0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 17275.0 3636.0 0 0 t 0 0 0 0 0 56949.0 0.0 0.0 56949.0 39674.0 0.0 0 0

MA0704.2_rc_shift5 (Lhx4_rc)
; oligos_6nt_mkv3_m1 versus MA0704.2_rc (Lhx4_rc); m=40/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.580274; -----TAATTA-- ; cor=; Ncor= a 0 0 0 0 0 135.0 2896.0 2896.0 155.0 255.0 2896.0 0 0 c 0 0 0 0 0 316.0 57.0 0.0 0.0 309.0 0.0 0 0 g 0 0 0 0 0 39.0 446.0 0.0 0.0 428.0 912.0 0 0 t 0 0 0 0 0 2896.0 0.0 0.0 2896.0 2896.0 217.0 0 0

MA0904.3_shift5 (HOXB5)
; oligos_6nt_mkv3_m1 versus MA0904.3 (HOXB5); m=41/103; ncol2=6; w=0; offset=2; strand=D; shift=5; score=0.572508; -----TMATKA-- ; cor=; Ncor= a 0 0 0 0 0 0.0 3067.0 3067.0 0.0 6.0 3067.0 0 0 c 0 0 0 0 0 537.0 1031.0 0.0 0.0 26.0 0.0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 1061.0 564.0 0 0 t 0 0 0 0 0 3067.0 0.0 0.0 3067.0 3067.0 0.0 0 0

MA0642.3_rc_shift5 (EN2_rc)
; oligos_6nt_mkv3_m1 versus MA0642.3_rc (EN2_rc); m=42/103; ncol2=7; w=0; offset=2; strand=R; shift=5; score=0.569938; -----TAATTrs- ; cor=; Ncor= a 0 0 0 0 0 0.0 898.0 898.0 0.0 103.0 321.0 313.0 0 c 0 0 0 0 0 168.0 0.0 0.0 31.0 44.0 0.0 474.0 0 g 0 0 0 0 0 4.0 0.0 0.0 0.0 198.0 577.0 898.0 0 t 0 0 0 0 0 898.0 28.0 0.0 898.0 898.0 0.0 115.0 0

MA1495.2_shift5 (HOXA1)
; oligos_6nt_mkv3_m1 versus MA1495.2 (HOXA1); m=43/103; ncol2=6; w=0; offset=2; strand=D; shift=5; score=0.569092; -----TAATtA-- ; cor=; Ncor= a 0 0 0 0 0 0.0 7406.0 7406.0 0.0 0.0 7406.0 0 0 c 0 0 0 0 0 1546.0 2083.0 0.0 0.0 1310.0 0.0 0 0 g 0 0 0 0 0 0.0 1244.0 0.0 0.0 2265.0 1576.0 0 0 t 0 0 0 0 0 7406.0 0.0 0.0 7406.0 7406.0 0.0 0 0

MA1502.2_rc_shift5 (HOXB8_rc)
; oligos_6nt_mkv3_m1 versus MA1502.2_rc (HOXB8_rc); m=44/103; ncol2=7; w=0; offset=2; strand=R; shift=5; score=0.568283; -----TAATkrc- ; cor=; Ncor= a 0 0 0 0 0 0.0 4474.0 4474.0 0.0 0.0 1914.0 637.0 0 c 0 0 0 0 0 0.0 542.0 0.0 0.0 89.0 0.0 2779.0 0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 3374.0 2560.0 536.0 0 t 0 0 0 0 0 4474.0 284.0 0.0 4474.0 4474.0 0.0 522.0 0

MA0793.2_shift2 (POU6F2)
; oligos_6nt_mkv3_m1 versus MA0793.2 (POU6F2); m=45/103; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.56757; --asCTmATTA-- ; cor=; Ncor= a 0 0 1848.0 714.0 239.0 75.0 1192.0 3297.0 0.0 0.0 3297.0 0 0 c 0 0 321.0 1181.0 3297.0 64.0 2105.0 75.0 4.0 12.0 27.0 0 0 g 0 0 582.0 2116.0 219.0 114.0 50.0 0.0 0.0 41.0 22.0 0 0 t 0 0 546.0 266.0 257.0 3297.0 81.0 21.0 3297.0 3297.0 53.0 0 0

MA0634.2_rc_shift5 (ALX3_rc)
; oligos_6nt_mkv3_m1 versus MA0634.2_rc (ALX3_rc); m=46/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.563995; -----TAATTr-- ; cor=; Ncor= a 0 0 0 0 0 977.0 7877.0 7877.0 231.0 629.0 4510.0 0 0 c 0 0 0 0 0 87.0 239.0 8.0 141.0 885.0 345.0 0 0 g 0 0 0 0 0 449.0 729.0 72.0 317.0 506.0 3367.0 0 0 t 0 0 0 0 0 7877.0 697.0 76.0 7877.0 7877.0 794.0 0 0

MA1481.2_rc_shift5 (DRGX_rc)
; oligos_6nt_mkv3_m1 versus MA1481.2_rc (DRGX_rc); m=47/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.563488; -----TAATTr-- ; cor=; Ncor= a 0 0 0 0 0 144.0 14867.0 14867.0 0.0 0.0 8870.0 0 0 c 0 0 0 0 0 962.0 209.0 0.0 0.0 2037.0 1111.0 0 0 g 0 0 0 0 0 17.0 813.0 0.0 0.0 501.0 5997.0 0 0 t 0 0 0 0 0 14867.0 0.0 0.0 14867.0 14867.0 1079.0 0 0

MA0888.2_rc_shift5 (EVX2_rc)
; oligos_6nt_mkv3_m1 versus MA0888.2_rc (EVX2_rc); m=48/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.563072; -----TAATtA-- ; cor=; Ncor= a 0 0 0 0 0 446.0 20419.0 20419.0 0.0 752.0 20419.0 0 0 c 0 0 0 0 0 1559.0 445.0 702.0 881.0 4541.0 969.0 0 0 g 0 0 0 0 0 0.0 863.0 166.0 156.0 5018.0 5669.0 0 0 t 0 0 0 0 0 20419.0 303.0 5.0 20419.0 10108.0 2541.0 0 0

MA0887.2_rc_shift5 (EVX1_rc)
; oligos_6nt_mkv3_m1 versus MA0887.2_rc (EVX1_rc); m=49/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.562613; -----TAATta-- ; cor=; Ncor= a 0 0 0 0 0 172.0 7894.0 7894.0 0.0 358.0 7894.0 0 0 c 0 0 0 0 0 725.0 171.0 267.0 236.0 1885.0 269.0 0 0 g 0 0 0 0 0 14.0 463.0 67.0 29.0 1752.0 2343.0 0 0 t 0 0 0 0 0 7894.0 232.0 0.0 7894.0 3899.0 1196.0 0 0

MA0132.3_rc_shift5 (PDX1_rc)
; oligos_6nt_mkv3_m1 versus MA0132.3_rc (PDX1_rc); m=50/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.561056; -----TAATkr-- ; cor=; Ncor= a 0 0 0 0 0 0.0 7130.0 7130.0 0.0 78.0 4661.0 0 0 c 0 0 0 0 0 0.0 0.0 0.0 0.0 185.0 0.0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 45.0 2291.0 2469.0 0 0 t 0 0 0 0 0 7130.0 0.0 0.0 7130.0 4839.0 292.0 0 0

MA0910.3_rc_shift5 (HOXD8_rc)
; oligos_6nt_mkv3_m1 versus MA0910.3_rc (HOXD8_rc); m=51/103; ncol2=7; w=0; offset=2; strand=R; shift=5; score=0.561044; -----TAATkrc- ; cor=; Ncor= a 0 0 0 0 0 0.0 3629.0 3629.0 0.0 0.0 1480.0 399.0 0 c 0 0 0 0 0 0.0 507.0 0.0 0.0 47.0 0.0 2287.0 0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 3006.0 2150.0 405.0 0 t 0 0 0 0 0 3629.0 178.0 0.0 3629.0 3629.0 0.0 537.0 0

MA0662.2_rc_shift5 (MIXL1_rc)
; oligos_6nt_mkv3_m1 versus MA0662.2_rc (MIXL1_rc); m=52/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.560452; -----TAATTr-- ; cor=; Ncor= a 0 0 0 0 0 2895.0 27042.0 27042.0 736.0 1038.0 15403.0 0 0 c 0 0 0 0 0 115.0 2031.0 181.0 556.0 3660.0 1245.0 0 0 g 0 0 0 0 0 1903.0 4270.0 510.0 662.0 1911.0 11639.0 0 0 t 0 0 0 0 0 27042.0 1385.0 0.0 27042.0 27042.0 2635.0 0 0

MA0721.2_rc_shift5 (UNCX_rc)
; oligos_6nt_mkv3_m1 versus MA0721.2_rc (UNCX_rc); m=53/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.559627; -----TAATTr-- ; cor=; Ncor= a 0 0 0 0 0 3885.0 36926.0 36926.0 890.0 2629.0 20126.0 0 0 c 0 0 0 0 0 731.0 1782.0 117.0 420.0 4582.0 2086.0 0 0 g 0 0 0 0 0 2211.0 3958.0 806.0 1302.0 2540.0 16800.0 0 0 t 0 0 0 0 0 36926.0 3111.0 481.0 36926.0 36926.0 3975.0 0 0

MA0892.2_rc_shift5 (GSX1_rc)
; oligos_6nt_mkv3_m1 versus MA0892.2_rc (GSX1_rc); m=54/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.559385; -----TAATkr-- ; cor=; Ncor= a 0 0 0 0 0 103.0 1183.0 1183.0 50.0 177.0 733.0 0 0 c 0 0 0 0 0 9.0 0.0 3.0 123.0 60.0 48.0 0 0 g 0 0 0 0 0 0.0 106.0 79.0 106.0 402.0 450.0 0 0 t 0 0 0 0 0 1183.0 106.0 90.0 1183.0 781.0 124.0 0 0

MA0716.2_rc_shift5 (PRRX1_rc)
; oligos_6nt_mkv3_m1 versus MA0716.2_rc (PRRX1_rc); m=55/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.558467; -----TAATTr-- ; cor=; Ncor= a 0 0 0 0 0 1229.0 23897.0 23897.0 209.0 810.0 12775.0 0 0 c 0 0 0 0 0 136.0 1004.0 0.0 202.0 1776.0 1121.0 0 0 g 0 0 0 0 0 644.0 2302.0 3.0 503.0 1088.0 11122.0 0 0 t 0 0 0 0 0 23897.0 1264.0 0.0 23897.0 23897.0 2373.0 0 0

MA0027.3_rc_shift5 (EN1_rc)
; oligos_6nt_mkv3_m1 versus MA0027.3_rc (EN1_rc); m=56/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.557581; -----TAATTr-- ; cor=; Ncor= a 0 0 0 0 0 132.0 2891.0 2891.0 0.0 0.0 1562.0 0 0 c 0 0 0 0 0 30.0 162.0 0.0 0.0 71.0 5.0 0 0 g 0 0 0 0 0 0.0 483.0 0.0 28.0 99.0 1328.0 0 0 t 0 0 0 0 0 2891.0 57.0 0.0 2891.0 2891.0 104.0 0 0

MA0654.2_rc_shift5 (ISX_rc)
; oligos_6nt_mkv3_m1 versus MA0654.2_rc (ISX_rc); m=57/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.557012; -----TAATTr-- ; cor=; Ncor= a 0 0 0 0 0 49.0 2065.0 2065.0 10.0 24.0 1061.0 0 0 c 0 0 0 0 0 0.0 24.0 0.0 0.0 5.0 0.0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 16.0 48.0 1003.0 0 0 t 0 0 0 0 0 2065.0 0.0 0.0 2065.0 2065.0 10.0 0 0

MA0720.2_rc_shift5 (Shox2_rc)
; oligos_6nt_mkv3_m1 versus MA0720.2_rc (Shox2_rc); m=58/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.555906; -----TAATTr-- ; cor=; Ncor= a 0 0 0 0 0 895.0 18179.0 18179.0 79.0 766.0 9152.0 0 0 c 0 0 0 0 0 36.0 870.0 0.0 3.0 426.0 228.0 0 0 g 0 0 0 0 0 193.0 545.0 12.0 138.0 626.0 9027.0 0 0 t 0 0 0 0 0 18179.0 597.0 29.0 18179.0 18179.0 979.0 0 0

MA0153.2_rc_shift3 (HNF1B_rc)
; oligos_6nt_mkv3_m1 versus MA0153.2_rc (HNF1B_rc); m=59/103; ncol2=13; w=0; offset=0; strand=R; shift=3; score=0.55551; ---rTTAATsATT ; cor=; Ncor= a 0 0 0 13724.0 406.0 3119.0 30839.0 30839.0 1047.0 5474.0 30839.0 612.0 49.0 c 0 0 0 725.0 1980.0 5271.0 1.0 1589.0 600.0 9626.0 66.0 140.0 398.0 g 0 0 0 17114.0 1472.0 794.0 665.0 416.0 73.0 9236.0 809.0 1163.0 13.0 t 0 0 0 1790.0 30839.0 30839.0 80.0 1323.0 30839.0 6502.0 1944.0 30839.0 30839.0

MA1577.2_rc_shift5 (TLX2_rc)
; oligos_6nt_mkv3_m1 versus MA1577.2_rc (TLX2_rc); m=60/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.555066; -----TAATTr-- ; cor=; Ncor= a 0 0 0 0 0 0.0 7799.0 7799.0 0.0 0.0 8156.0 0 0 c 0 0 0 0 0 0.0 0.0 0.0 0.0 80.0 1112.0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 7799.0 0 0 t 0 0 0 0 0 7799.0 0.0 0.0 7799.0 7799.0 1435.0 0 0

MA0723.3_rc_shift5 (VAX2_rc)
; oligos_6nt_mkv3_m1 versus MA0723.3_rc (VAX2_rc); m=61/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.55451; -----TAATtr-- ; cor=; Ncor= a 0 0 0 0 0 1082.0 13498.0 13498.0 1850.0 2652.0 7807.0 0 0 c 0 0 0 0 0 0.0 2988.0 0.0 0.0 962.0 117.0 0 0 g 0 0 0 0 0 0.0 133.0 0.0 422.0 5627.0 5691.0 0 0 t 0 0 0 0 0 13498.0 1361.0 357.0 13498.0 13498.0 857.0 0 0

MA0046.3_shift3 (HNF1A)
; oligos_6nt_mkv3_m1 versus MA0046.3 (HNF1A); m=62/103; ncol2=13; w=0; offset=0; strand=D; shift=3; score=0.553804; ---rTTAATsATT ; cor=; Ncor= a 0 0 0 6981.0 376.0 2914.0 14149.0 14149.0 1274.0 3340.0 14149.0 711.0 42.0 c 0 0 0 415.0 1060.0 2170.0 3.0 633.0 423.0 3750.0 9.0 13.0 228.0 g 0 0 0 7168.0 903.0 544.0 246.0 8.0 7.0 4540.0 339.0 845.0 4.0 t 0 0 0 636.0 14149.0 14149.0 14.0 364.0 14149.0 2518.0 651.0 14149.0 14149.0

MA1505.2_rc_shift5 (HOXC8_rc)
; oligos_6nt_mkv3_m1 versus MA1505.2_rc (HOXC8_rc); m=63/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.552972; -----YAATTr-- ; cor=; Ncor= a 0 0 0 0 0 0.0 9273.0 9273.0 0.0 983.0 9273.0 0 0 c 0 0 0 0 0 4325.0 2656.0 211.0 0.0 19.0 0.0 0 0 g 0 0 0 0 0 0.0 99.0 0.0 20.0 2727.0 4555.0 0 0 t 0 0 0 0 0 9273.0 961.0 0.0 9273.0 9273.0 0.0 0 0

MA0705.2_rc_shift5 (Lhx8_rc)
; oligos_6nt_mkv3_m1 versus MA0705.2_rc (Lhx8_rc); m=64/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.552506; -----YRATTR-- ; cor=; Ncor= a 0 0 0 0 0 0.0 5092.0 5092.0 0.0 0.0 5092.0 0 0 c 0 0 0 0 0 1929.0 88.0 0.0 0.0 1670.0 0.0 0 0 g 0 0 0 0 0 0.0 2083.0 0.0 0.0 160.0 1996.0 0 0 t 0 0 0 0 0 5092.0 0.0 0.0 5092.0 5092.0 0.0 0 0

MA0630.2_shift5 (SHOX)
; oligos_6nt_mkv3_m1 versus MA0630.2 (SHOX); m=65/103; ncol2=6; w=0; offset=2; strand=D; shift=5; score=0.552394; -----TAATTr-- ; cor=; Ncor= a 0 0 0 0 0 74.0 852.0 991.0 15.0 98.0 416.0 0 0 c 0 0 0 0 0 30.0 48.0 2.0 15.0 50.0 48.0 0 0 g 0 0 0 0 0 9.0 55.0 5.0 27.0 84.0 424.0 0 0 t 0 0 0 0 0 886.0 45.0 2.0 943.0 768.0 111.0 0 0

MA0717.2_rc_shift5 (RAX2_rc)
; oligos_6nt_mkv3_m1 versus MA0717.2_rc (RAX2_rc); m=66/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.551156; -----TAATTr-- ; cor=; Ncor= a 0 0 0 0 0 4258.0 38860.0 38860.0 1030.0 2421.0 19215.0 0 0 c 0 0 0 0 0 360.0 2513.0 125.0 757.0 4490.0 1688.0 0 0 g 0 0 0 0 0 2644.0 4232.0 738.0 1523.0 3060.0 19645.0 0 0 t 0 0 0 0 0 38860.0 2167.0 270.0 38860.0 38860.0 3558.0 0 0

MA0718.2_rc_shift5 (RAX_rc)
; oligos_6nt_mkv3_m1 versus MA0718.2_rc (RAX_rc); m=67/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.549912; -----TAATTr-- ; cor=; Ncor= a 0 0 0 0 0 126.0 2412.0 2412.0 24.0 40.0 1131.0 0 0 c 0 0 0 0 0 20.0 49.0 0.0 12.0 3.0 25.0 0 0 g 0 0 0 0 0 0.0 71.0 0.0 38.0 17.0 1281.0 0 0 t 0 0 0 0 0 2412.0 71.0 123.0 2412.0 2412.0 214.0 0 0

MA0894.2_shift5 (HESX1)
; oligos_6nt_mkv3_m1 versus MA0894.2 (HESX1); m=68/103; ncol2=6; w=0; offset=2; strand=D; shift=5; score=0.548817; -----TAATTr-- ; cor=; Ncor= a 0 0 0 0 0 187.0 4072.0 4072.0 0.0 0.0 1892.0 0 0 c 0 0 0 0 0 0.0 0.0 7.0 0.0 15.0 38.0 0 0 g 0 0 0 0 0 34.0 53.0 9.0 15.0 0.0 2180.0 0 0 t 0 0 0 0 0 4072.0 31.0 0.0 4072.0 4072.0 97.0 0 0

MA0902.3_rc_shift5 (HOXB2_rc)
; oligos_6nt_mkv3_m1 versus MA0902.3_rc (HOXB2_rc); m=69/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.547961; -----TAATkr-- ; cor=; Ncor= a 0 0 0 0 0 0.0 6827.0 6827.0 0.0 0.0 3993.0 0 0 c 0 0 0 0 0 0.0 1876.0 0.0 0.0 199.0 0.0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 3276.0 2834.0 0 0 t 0 0 0 0 0 6827.0 0.0 0.0 6827.0 6827.0 51.0 0 0

MA0675.2_rc_shift5 (NKX6-2_rc)
; oligos_6nt_mkv3_m1 versus MA0675.2_rc (NKX6-2_rc); m=70/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.547739; -----TAATkr-- ; cor=; Ncor= a 0 0 0 0 0 678.0 18935.0 18935.0 546.0 2582.0 11104.0 0 0 c 0 0 0 0 0 775.0 551.0 0.0 191.0 1053.0 814.0 0 0 g 0 0 0 0 0 370.0 2233.0 0.0 310.0 7581.0 7831.0 0 0 t 0 0 0 0 0 18935.0 2468.0 584.0 18935.0 11354.0 1172.0 0 0

MA0903.2_rc_shift5 (HOXB3_rc)
; oligos_6nt_mkv3_m1 versus MA0903.2_rc (HOXB3_rc); m=71/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.547657; -----TAATkr-- ; cor=; Ncor= a 0 0 0 0 0 574.0 12899.0 12899.0 242.0 697.0 7920.0 0 0 c 0 0 0 0 0 0.0 0.0 0.0 640.0 838.0 604.0 0 0 g 0 0 0 0 0 119.0 839.0 150.0 545.0 5106.0 4979.0 0 0 t 0 0 0 0 0 12899.0 441.0 0.0 12899.0 7793.0 1744.0 0 0

MA0882.2_rc_shift5 (DLX6_rc)
; oligos_6nt_mkv3_m1 versus MA0882.2_rc (DLX6_rc); m=72/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.547288; -----TAATTr-- ; cor=; Ncor= a 0 0 0 0 0 193.0 2623.0 2623.0 56.0 184.0 1212.0 0 0 c 0 0 0 0 0 16.0 68.0 0.0 0.0 143.0 21.0 0 0 g 0 0 0 0 0 30.0 140.0 0.0 124.0 273.0 1410.0 0 0 t 0 0 0 0 0 2623.0 48.0 12.0 2623.0 2623.0 137.0 0 0

MA0890.2_rc_shift5 (GBX2_rc)
; oligos_6nt_mkv3_m1 versus MA0890.2_rc (GBX2_rc); m=73/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.54387; -----TAATTr-- ; cor=; Ncor= a 0 0 0 0 0 650.0 27366.0 27366.0 25.0 227.0 11855.0 0 0 c 0 0 0 0 0 30.0 673.0 65.0 114.0 1113.0 106.0 0 0 g 0 0 0 0 0 73.0 570.0 61.0 250.0 570.0 15511.0 0 0 t 0 0 0 0 0 27366.0 318.0 0.0 27366.0 27366.0 699.0 0 0

MA1471.2_rc_shift5 (BARX2_rc)
; oligos_6nt_mkv3_m1 versus MA1471.2_rc (BARX2_rc); m=74/103; ncol2=9; w=0; offset=2; strand=R; shift=5; score=0.543503; -----TAAYkrTT ; cor=; Ncor= a 0 0 0 0 0 4259.0 28388.0 28388.0 0.0 3452.0 11453.0 2847.0 7507.0 c 0 0 0 0 0 415.0 0.0 41.0 10009.0 5135.0 1342.0 2920.0 99.0 g 0 0 0 0 0 325.0 2051.0 0.0 49.0 28388.0 16934.0 3348.0 30.0 t 0 0 0 0 0 28388.0 19.0 7.0 28388.0 15759.0 2814.0 28388.0 28388.0

MA0699.2_rc_shift5 (LBX2_rc)
; oligos_6nt_mkv3_m1 versus MA0699.2_rc (LBX2_rc); m=75/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.543334; -----TAATTr-- ; cor=; Ncor= a 0 0 0 0 0 148.0 2996.0 2996.0 89.0 57.0 1362.0 0 0 c 0 0 0 0 0 106.0 293.0 118.0 130.0 325.0 109.0 0 0 g 0 0 0 0 0 34.0 258.0 29.0 290.0 338.0 1634.0 0 0 t 0 0 0 0 0 2996.0 150.0 0.0 2996.0 2996.0 157.0 0 0

MA0880.2_rc_shift5 (Dlx3_rc)
; oligos_6nt_mkv3_m1 versus MA0880.2_rc (Dlx3_rc); m=76/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.54189; -----TAATTr-- ; cor=; Ncor= a 0 0 0 0 0 691.0 7323.0 7323.0 299.0 643.0 3190.0 0 0 c 0 0 0 0 0 101.0 452.0 60.0 62.0 587.0 164.0 0 0 g 0 0 0 0 0 202.0 535.0 66.0 536.0 995.0 4133.0 0 0 t 0 0 0 0 0 7323.0 399.0 173.0 7323.0 7323.0 572.0 0 0

MA0881.2_rc_shift5 (Dlx4_rc)
; oligos_6nt_mkv3_m1 versus MA0881.2_rc (Dlx4_rc); m=77/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.541107; -----TAATTr-- ; cor=; Ncor= a 0 0 0 0 0 1127.0 12054.0 12054.0 499.0 883.0 5213.0 0 0 c 0 0 0 0 0 134.0 542.0 38.0 55.0 739.0 145.0 0 0 g 0 0 0 0 0 316.0 868.0 85.0 744.0 1500.0 6841.0 0 0 t 0 0 0 0 0 12054.0 440.0 88.0 12054.0 12054.0 724.0 0 0

MA1507.2_rc_shift5 (HOXD4_rc)
; oligos_6nt_mkv3_m1 versus MA1507.2_rc (HOXD4_rc); m=78/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.541028; -----TAATkR-- ; cor=; Ncor= a 0 0 0 0 0 0.0 3405.0 3405.0 0.0 0.0 3405.0 0 0 c 0 0 0 0 0 194.0 0.0 0.0 176.0 0.0 0.0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 1862.0 1184.0 0 0 t 0 0 0 0 0 3405.0 0.0 0.0 3405.0 1542.0 0.0 0 0

MA1499.2_rc_shift5 (HOXB4_rc)
; oligos_6nt_mkv3_m1 versus MA1499.2_rc (HOXB4_rc); m=79/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.538413; -----TAATkA-- ; cor=; Ncor= a 0 0 0 0 0 0.0 9080.0 9080.0 0.0 0.0 9080.0 0 0 c 0 0 0 0 0 55.0 271.0 0.0 265.0 0.0 0.0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 5459.0 2103.0 0 0 t 0 0 0 0 0 9080.0 0.0 0.0 9080.0 3621.0 0.0 0 0

MA0125.2_shift5 (Nobox)
; oligos_6nt_mkv3_m1 versus MA0125.2 (Nobox); m=80/103; ncol2=6; w=0; offset=2; strand=D; shift=5; score=0.538077; -----TAATTr-- ; cor=; Ncor= a 0 0 0 0 0 0.0 36.0 38.0 1.0 2.0 15.0 0 0 c 0 0 0 0 0 1.0 0.0 0.0 1.0 0.0 0.0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 2.0 4.0 22.0 0 0 t 0 0 0 0 0 37.0 2.0 0.0 34.0 32.0 1.0 0 0

MA0707.3_rc_shift5 (MNX1_rc)
; oligos_6nt_mkv3_m1 versus MA0707.3_rc (MNX1_rc); m=81/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.534107; -----TAATyr-- ; cor=; Ncor= a 0 0 0 0 0 0.0 19178.0 19178.0 0.0 0.0 11058.0 0 0 c 0 0 0 0 0 0.0 797.0 0.0 0.0 16561.0 0.0 0 0 g 0 0 0 0 0 0.0 2158.0 0.0 0.0 3243.0 8120.0 0 0 t 0 0 0 0 0 19178.0 0.0 0.0 19178.0 19178.0 0.0 0 0

MA1504.2_rc_shift5 (HOXC4_rc)
; oligos_6nt_mkv3_m1 versus MA1504.2_rc (HOXC4_rc); m=82/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.532085; -----TAATkR-- ; cor=; Ncor= a 0 0 0 0 0 0.0 8759.0 8759.0 0.0 0.0 8759.0 0 0 c 0 0 0 0 0 825.0 0.0 0.0 583.0 0.0 0.0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 5152.0 3111.0 0 0 t 0 0 0 0 0 8759.0 0.0 0.0 8759.0 3607.0 188.0 0 0

MA0713.1_rc_shift5 (PHOX2A_rc)
; oligos_6nt_mkv3_m1 versus MA0713.1_rc (PHOX2A_rc); m=83/103; ncol2=11; w=0; offset=2; strand=R; shift=5; score=0.531519; -----TAATTrra ; cor=; Ncor= a 0 0 0 0 0 1657.0 11434.0 11434.0 132.0 437.0 6855.0 6130.0 11434.0 c 0 0 0 0 0 816.0 81.0 2.0 309.0 1896.0 806.0 2300.0 629.0 g 0 0 0 0 0 229.0 778.0 10.0 199.0 717.0 4580.0 5304.0 4424.0 t 0 0 0 0 0 11434.0 1135.0 0.0 11434.0 11434.0 1262.0 639.0 1362.0

MA1549.2_rc_shift4 (POU6F1_rc)
; oligos_6nt_mkv3_m1 versus MA1549.2_rc (POU6F1_rc); m=84/103; ncol2=7; w=0; offset=1; strand=R; shift=4; score=0.525583; ----CTCATTA-- ; cor=; Ncor= a 0 0 0 0 1855.0 411.0 615.0 6413.0 0.0 0.0 6413.0 0 0 c 0 0 0 0 6413.0 0.0 5799.0 298.0 0.0 255.0 10.0 0 0 g 0 0 0 0 851.0 96.0 206.0 0.0 0.0 179.0 273.0 0 0 t 0 0 0 0 314.0 6413.0 67.0 0.0 6413.0 6413.0 164.0 0 0

MA0683.2_shift1 (POU4F2)
; oligos_6nt_mkv3_m1 versus MA0683.2 (POU4F2); m=85/103; ncol2=15; w=-2; offset=-2; strand=D; shift=1; score=0.525497; -TGmATAATTAAT ; cor=; Ncor= a 0 110.0 193.0 1160.0 3079.0 1.0 2990.0 2621.0 76.0 304.0 3098.0 3187.0 19.0 c 0 121.0 34.0 2471.0 6.0 0.0 9.0 82.0 54.0 9.0 26.0 4.0 30.0 g 0 53.0 3440.0 2.0 4.0 0.0 14.0 53.0 28.0 8.0 234.0 9.0 69.0 t 0 2757.0 81.0 5.0 11.0 2829.0 258.0 737.0 2735.0 2669.0 57.0 0.0 2761.0

MA0666.3_rc_shift5 (MSX1_rc)
; oligos_6nt_mkv3_m1 versus MA0666.3_rc (MSX1_rc); m=86/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.522665; -----TAATTr-- ; cor=; Ncor= a 0 0 0 0 0 0.0 5064.0 5064.0 0.0 0.0 2415.0 0 0 c 0 0 0 0 0 159.0 0.0 0.0 0.0 146.0 0.0 0 0 g 0 0 0 0 0 0.0 280.0 0.0 42.0 125.0 5064.0 0 0 t 0 0 0 0 0 5064.0 0.0 0.0 5064.0 5064.0 227.0 0 0

MA0709.2_rc_shift5 (Msx3_rc)
; oligos_6nt_mkv3_m1 versus MA0709.2_rc (Msx3_rc); m=87/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.520675; -----TAATTr-- ; cor=; Ncor= a 0 0 0 0 0 213.0 8380.0 8380.0 5.0 94.0 2582.0 0 0 c 0 0 0 0 0 88.0 105.0 0.0 38.0 237.0 29.0 0 0 g 0 0 0 0 0 59.0 215.0 0.0 89.0 160.0 5798.0 0 0 t 0 0 0 0 0 8380.0 121.0 0.0 8380.0 8380.0 312.0 0 0

MA0879.3_rc_shift5 (DLX1_rc)
; oligos_6nt_mkv3_m1 versus MA0879.3_rc (DLX1_rc); m=88/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.518294; -----TAATTr-- ; cor=; Ncor= a 0 0 0 0 0 614.0 6231.0 6231.0 0.0 540.0 2171.0 0 0 c 0 0 0 0 0 168.0 155.0 0.0 0.0 954.0 0.0 0 0 g 0 0 0 0 0 0.0 639.0 0.0 222.0 1212.0 4059.0 0 0 t 0 0 0 0 0 6231.0 0.0 0.0 6231.0 6231.0 265.0 0 0

MA0708.3_rc_shift5 (MSX2_rc)
; oligos_6nt_mkv3_m1 versus MA0708.3_rc (MSX2_rc); m=89/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.516867; -----TAATTR-- ; cor=; Ncor= a 0 0 0 0 0 0.0 6353.0 6353.0 0.0 0.0 2737.0 0 0 c 0 0 0 0 0 243.0 0.0 0.0 0.0 259.0 0.0 0 0 g 0 0 0 0 0 0.0 600.0 0.0 112.0 175.0 6353.0 0 0 t 0 0 0 0 0 6353.0 62.0 0.0 6353.0 6353.0 220.0 0 0

MA0715.1_rc_shift5 (PROP1_rc)
; oligos_6nt_mkv3_m1 versus MA0715.1_rc (PROP1_rc); m=90/103; ncol2=11; w=0; offset=2; strand=R; shift=5; score=0.515786; -----TAATTwrA ; cor=; Ncor= a 0 0 0 0 0 47.0 575.0 575.0 6.0 33.0 258.0 367.0 575.0 c 0 0 0 0 0 15.0 6.0 0.0 46.0 0.0 78.0 20.0 18.0 g 0 0 0 0 0 0.0 18.0 0.0 3.0 38.0 57.0 209.0 39.0 t 0 0 0 0 0 575.0 13.0 2.0 575.0 575.0 183.0 28.0 41.0

MA0601.2_shift6 (Arid3b)
; oligos_6nt_mkv3_m1 versus MA0601.2 (Arid3b); m=91/103; ncol2=7; w=0; offset=3; strand=D; shift=6; score=0.505232; ------waTTAAT ; cor=; Ncor= a 0 0 0 0 0 0 273.0 609.0 104.0 0.0 1000.0 911.0 89.0 c 0 0 0 0 0 0 80.0 119.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0 80.0 34.0 0.0 0.0 0.0 0.0 0.0 t 0 0 0 0 0 0 566.0 238.0 895.0 1000.0 0.0 89.0 911.0

MA1498.3_rc_shift5 (HOXA7_rc)
; oligos_6nt_mkv3_m1 versus MA1498.3_rc (HOXA7_rc); m=92/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.504943; -----TAATkr-- ; cor=; Ncor= a 0 0 0 0 0 806.0 8075.0 8075.0 306.0 815.0 3085.0 0 0 c 0 0 0 0 0 252.0 0.0 0.0 622.0 525.0 310.0 0 0 g 0 0 0 0 0 478.0 439.0 0.0 199.0 3628.0 4990.0 0 0 t 0 0 0 0 0 8075.0 994.0 2.0 8075.0 4447.0 1082.0 0 0

MA1963.2_shift4 (SATB1)
; oligos_6nt_mkv3_m1 versus MA1963.2 (SATB1); m=93/103; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.500142; ----CTAATAA-- ; cor=; Ncor= a 0 0 0 0 262.0 492.0 33670.0 32708.0 288.0 32009.0 30660.0 0 0 c 0 0 0 0 33122.0 195.0 164.0 115.0 128.0 485.0 881.0 0 0 g 0 0 0 0 140.0 37.0 221.0 120.0 123.0 889.0 1071.0 0 0 t 0 0 0 0 700.0 33500.0 169.0 1281.0 33685.0 841.0 1612.0 0 0

MA0876.2_rc_shift5 (BSX_rc)
; oligos_6nt_mkv3_m1 versus MA0876.2_rc (BSX_rc); m=94/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.499158; -----TAATkr-- ; cor=; Ncor= a 0 0 0 0 0 0.0 8832.0 8832.0 66.0 116.0 3247.0 0 0 c 0 0 0 0 0 0.0 0.0 0.0 1078.0 2197.0 103.0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 194.0 2483.0 5585.0 0 0 t 0 0 0 0 0 8832.0 96.0 0.0 8832.0 4036.0 688.0 0 0

MA0895.2_shift5 (HMBOX1)
; oligos_6nt_mkv3_m1 versus MA0895.2 (HMBOX1); m=95/103; ncol2=7; w=0; offset=2; strand=D; shift=5; score=0.490327; -----TAGTTAm- ; cor=; Ncor= a 0 0 0 0 0 75.0 1231.0 2.0 26.0 237.0 1231.0 753.0 0 c 0 0 0 0 0 25.0 0.0 51.0 1.0 50.0 4.0 478.0 0 g 0 0 0 0 0 63.0 367.0 1231.0 5.0 8.0 17.0 130.0 0 t 0 0 0 0 0 1231.0 44.0 5.0 1231.0 1231.0 102.0 140.0 0

MA1940.2_rc_shift5 (ETV2::DRGX_rc)
; oligos_6nt_mkv3_m1 versus MA1940.2_rc (ETV2::DRGX_rc); m=96/103; ncol2=12; w=0; offset=2; strand=R; shift=5; score=0.490265; -----TAATtryW ; cor=; Ncor= a 0 0 0 0 0 233.0 1566.0 1566.0 122.0 220.0 836.0 45.0 600.0 c 0 0 0 0 0 73.0 47.0 22.0 137.0 380.0 98.0 870.0 23.0 g 0 0 0 0 0 43.0 178.0 26.0 165.0 250.0 730.0 235.0 94.0 t 0 0 0 0 0 1566.0 163.0 10.0 1566.0 1566.0 50.0 416.0 1566.0

MA0681.3_rc_shift4 (PHOX2B_rc)
; oligos_6nt_mkv3_m1 versus MA0681.3_rc (PHOX2B_rc); m=97/103; ncol2=12; w=0; offset=1; strand=R; shift=4; score=0.487086; ----wTAATTTGA ; cor=; Ncor= a 0 0 0 0 26670.0 6276.0 45978.0 51614.0 1349.0 1815.0 7679.0 12293.0 50412.0 c 0 0 0 0 5569.0 2155.0 1232.0 372.0 761.0 1418.0 588.0 1873.0 467.0 g 0 0 0 0 4909.0 1936.0 1923.0 329.0 451.0 1453.0 1895.0 36619.0 615.0 t 0 0 0 0 16088.0 42869.0 4103.0 921.0 50675.0 48550.0 43074.0 2451.0 1742.0

MA0875.2_rc_shift5 (BARX1_rc)
; oligos_6nt_mkv3_m1 versus MA0875.2_rc (BARX1_rc); m=98/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.480894; -----TAATkg-- ; cor=; Ncor= a 0 0 0 0 0 0.0 6805.0 6805.0 0.0 87.0 1667.0 0 0 c 0 0 0 0 0 0.0 0.0 0.0 192.0 1386.0 246.0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 207.0 1992.0 5138.0 0 0 t 0 0 0 0 0 6805.0 0.0 0.0 6805.0 3339.0 590.0 0 0

MA0151.1_rc_shift3 (Arid3a_rc)
; oligos_6nt_mkv3_m1 versus MA0151.1_rc (Arid3a_rc); m=99/103; ncol2=6; w=0; offset=0; strand=R; shift=3; score=0.476253; ---TTTrAT---- ; cor=; Ncor= a 0 0 0 6.0 0.0 0.0 17.0 27.0 0.0 0 0 0 0 c 0 0 0 1.0 0.0 0.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0.0 0.0 0.0 9.0 0.0 0.0 0 0 0 0 t 0 0 0 20.0 27.0 27.0 1.0 0.0 27.0 0 0 0 0

MA0700.3_rc_shift5 (LHX2_rc)
; oligos_6nt_mkv3_m1 versus MA0700.3_rc (LHX2_rc); m=100/103; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.473819; -----TAATTG-- ; cor=; Ncor= a 0 0 0 0 0 39.0 6256.0 6082.0 133.0 420.0 640.0 0 0 c 0 0 0 0 0 6.0 5.0 64.0 77.0 52.0 37.0 0 0 g 0 0 0 0 0 13.0 5.0 58.0 101.0 71.0 5612.0 0 0 t 0 0 0 0 0 6275.0 67.0 129.0 6022.0 5790.0 44.0 0 0

MA1948.2_rc_shift5 (ETV5::HOXA2_rc)
; oligos_6nt_mkv3_m1 versus MA1948.2_rc (ETV5::HOXA2_rc); m=101/103; ncol2=12; w=0; offset=2; strand=R; shift=5; score=0.459384; -----TAATkACw ; cor=; Ncor= a 0 0 0 0 0 30.0 345.0 345.0 9.0 19.0 345.0 3.0 137.0 c 0 0 0 0 0 0.0 34.0 4.0 95.0 62.0 0.0 345.0 21.0 g 0 0 0 0 0 15.0 95.0 31.0 17.0 144.0 89.0 24.0 35.0 t 0 0 0 0 0 345.0 0.0 0.0 345.0 201.0 0.0 26.0 208.0

MA1944.2_rc_shift5 (ETV5::DRGX_rc)
; oligos_6nt_mkv3_m1 versus MA1944.2_rc (ETV5::DRGX_rc); m=102/103; ncol2=12; w=0; offset=2; strand=R; shift=5; score=0.452171; -----TAATTrCT ; cor=; Ncor= a 0 0 0 0 0 37.0 440.0 440.0 56.0 3.0 262.0 0.0 111.0 c 0 0 0 0 0 88.0 32.0 29.0 79.0 141.0 35.0 440.0 15.0 g 0 0 0 0 0 20.0 79.0 13.0 51.0 18.0 178.0 51.0 29.0 t 0 0 0 0 0 440.0 37.0 16.0 440.0 440.0 31.0 51.0 329.0

MA1949.2_rc_shift5 (FLI1::DRGX_rc)
; oligos_6nt_mkv3_m1 versus MA1949.2_rc (FLI1::DRGX_rc); m=103/103; ncol2=14; w=0; offset=2; strand=R; shift=5; score=0.418706; -----TAATTrCw ; cor=; Ncor= a 0 0 0 0 0 53.0 418.0 418.0 30.0 44.0 281.0 37.0 130.0 c 0 0 0 0 0 61.0 23.0 50.0 93.0 35.0 13.0 418.0 14.0 g 0 0 0 0 0 59.0 103.0 38.0 15.0 75.0 137.0 65.0 0.0 t 0 0 0 0 0 418.0 41.0 5.0 418.0 343.0 8.0 68.0 287.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m3_shift7 ; 12 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m3_shift7 (oligos_6nt_mkv3_m3)
; oligos_6nt_mkv3_m3; m=0 (reference); ncol1=10; shift=7; ncol=17; -------rvAGAAAGrr ; Alignment reference a 0 0 0 0 0 0 0 42 29 107 0 108 101 107 0 33 38 c 0 0 0 0 0 0 0 20 27 0 0 0 0 0 0 25 23 g 0 0 0 0 0 0 0 27 34 1 107 0 0 1 105 29 35 t 0 0 0 0 0 0 0 19 18 0 1 0 7 0 3 21 12

MA0508.4_rc_shift8 (PRDM1_rc)
; oligos_6nt_mkv3_m3 versus MA0508.4_rc (PRDM1_rc); m=1/11; ncol2=7; w=0; offset=1; strand=R; shift=8; score=0.654028; --------GAGAAAG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 660.0 49466.0 432.0 52619.0 50943.0 52905.0 829.0 0 0 c 0 0 0 0 0 0 0 0 290.0 1390.0 207.0 561.0 1011.0 826.0 701.0 0 0 g 0 0 0 0 0 0 0 0 52821.0 1076.0 53465.0 488.0 1346.0 467.0 52752.0 0 0 t 0 0 0 0 0 0 0 0 1710.0 3549.0 1377.0 1813.0 2181.0 1283.0 1199.0 0 0

MA2120.1_shift8 (ZNF184)
; oligos_6nt_mkv3_m3 versus MA2120.1 (ZNF184); m=2/11; ncol2=13; w=0; offset=1; strand=D; shift=8; score=0.585529; --------kaGAAAGrk ; cor=; Ncor= a 0 0 0 0 0 0 0 0 34.0 659.0 107.0 992.0 971.0 794.0 44.0 305.0 169.0 c 0 0 0 0 0 0 0 0 3.0 107.0 3.0 3.0 3.0 3.0 13.0 34.0 242.0 g 0 0 0 0 0 0 0 0 326.0 169.0 888.0 3.0 23.0 190.0 909.0 419.0 273.0 t 0 0 0 0 0 0 0 0 638.0 65.0 3.0 3.0 3.0 13.0 34.0 242.0 315.0

MA0869.3_shift7 (Sox11)
; oligos_6nt_mkv3_m3 versus MA0869.3 (Sox11); m=3/11; ncol2=8; w=0; offset=0; strand=D; shift=7; score=0.574354; -------GAACAAAG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1014.0 7912.0 9856.0 119.0 10020.0 9676.0 9276.0 506.0 0 0 c 0 0 0 0 0 0 0 764.0 766.0 100.0 9471.0 108.0 264.0 61.0 148.0 0 0 g 0 0 0 0 0 0 0 8063.0 1298.0 211.0 501.0 49.0 248.0 233.0 9486.0 0 0 t 0 0 0 0 0 0 0 407.0 272.0 81.0 157.0 71.0 60.0 678.0 108.0 0 0

MA0136.4_shift8 (Elf5)
; oligos_6nt_mkv3_m3 versus MA0136.4 (Elf5); m=4/11; ncol2=8; w=0; offset=1; strand=D; shift=8; score=0.57139; --------AAGGAAGT- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 29427.0 38778.0 512.0 587.0 40896.0 40552.0 2609.0 5180.0 0 c 0 0 0 0 0 0 0 0 6065.0 978.0 182.0 510.0 580.0 389.0 1234.0 3355.0 0 g 0 0 0 0 0 0 0 0 5204.0 2049.0 41025.0 40626.0 390.0 481.0 37803.0 4948.0 0 t 0 0 0 0 0 0 0 0 1450.0 341.0 427.0 423.0 280.0 724.0 500.0 28663.0 0

MA0867.3_shift8 (SOX4)
; oligos_6nt_mkv3_m3 versus MA0867.3 (SOX4); m=5/11; ncol2=8; w=0; offset=1; strand=D; shift=8; score=0.564046; --------aACAAwGr- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 5582.0 5582.0 0.0 5582.0 5582.0 5582.0 1018.0 2093.0 0 c 0 0 0 0 0 0 0 0 951.0 0.0 5582.0 1.0 6.0 120.0 64.0 1422.0 0 g 0 0 0 0 0 0 0 0 2047.0 0.0 37.0 6.0 11.0 50.0 5582.0 3489.0 0 t 0 0 0 0 0 0 0 0 431.0 9.0 33.0 0.0 0.0 2719.0 83.0 174.0 0

MA1709.2_shift5 (ZIM3)
; oligos_6nt_mkv3_m3 versus MA1709.2 (ZIM3); m=6/11; ncol2=11; w=-2; offset=-2; strand=D; shift=5; score=0.552566; -----mAACAGAAAcC- ; cor=; Ncor= a 0 0 0 0 0 5336.0 16896.0 16502.0 853.0 17067.0 194.0 15879.0 16933.0 14228.0 2482.0 1365.0 0 c 0 0 0 0 0 8338.0 118.0 107.0 15856.0 38.0 72.0 840.0 90.0 306.0 7474.0 15232.0 0 g 0 0 0 0 0 1327.0 106.0 229.0 435.0 39.0 16877.0 165.0 110.0 575.0 3674.0 109.0 0 t 0 0 0 0 0 2219.0 100.0 382.0 76.0 76.0 77.0 336.0 87.0 2111.0 3590.0 514.0 0

MA1623.2_shift4 (Stat2)
; oligos_6nt_mkv3_m3 versus MA1623.2 (Stat2); m=7/11; ncol2=10; w=-3; offset=-3; strand=D; shift=4; score=0.479002; ----gAAACAGAAA--- ; cor=; Ncor= a 0 0 0 0 969.0 3554.0 3736.0 3738.0 286.0 3146.0 152.0 3700.0 3747.0 3514.0 0 0 0 c 0 0 0 0 306.0 76.0 75.0 72.0 2907.0 151.0 45.0 49.0 45.0 147.0 0 0 0 g 0 0 0 0 2287.0 168.0 71.0 87.0 524.0 74.0 3707.0 163.0 98.0 157.0 0 0 0 t 0 0 0 0 397.0 161.0 77.0 62.0 242.0 588.0 55.0 47.0 69.0 141.0 0 0 0

MA0442.3_shift9 (SOX10)
; oligos_6nt_mkv3_m3 versus MA0442.3 (SOX10); m=8/11; ncol2=6; w=0; offset=2; strand=D; shift=9; score=0.463911; ---------ACAAAG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 2023.0 3.0 2029.0 1968.0 1959.0 10.0 0 0 c 0 0 0 0 0 0 0 0 0 4.0 1989.0 7.0 28.0 23.0 13.0 0 0 g 0 0 0 0 0 0 0 0 0 3.0 11.0 7.0 20.0 12.0 2012.0 0 0 t 0 0 0 0 0 0 0 0 0 25.0 52.0 12.0 39.0 61.0 20.0 0 0

MA2326.1_shift9 (IKZF2)
; oligos_6nt_mkv3_m3 versus MA2326.1 (IKZF2); m=9/11; ncol2=6; w=0; offset=2; strand=D; shift=9; score=0.461258; ---------AGGAAG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 11101.0 2.0 5.0 11264.0 11159.0 21.0 0 0 c 0 0 0 0 0 0 0 0 0 208.0 127.0 7.0 25.0 191.0 57.0 0 0 g 0 0 0 0 0 0 0 0 0 79.0 11244.0 11270.0 17.0 26.0 11273.0 0 0 t 0 0 0 0 0 0 0 0 0 6.0 21.0 112.0 88.0 18.0 43.0 0 0

MA0731.1_rc_shift0 (BCL6B_rc)
; oligos_6nt_mkv3_m3 versus MA0731.1_rc (BCL6B_rc); m=10/11; ncol2=17; w=-7; offset=-7; strand=R; shift=0; score=0.440193; kkAATTCCTAGAAAGCA ; cor=; Ncor= a 0.0 0.0 211.0 215.0 0.0 0.0 0.0 0.0 0.0 214.0 0.0 212.0 213.0 212.0 2.0 1.0 207.0 c 7.0 9.0 0.0 0.0 0.0 2.0 171.0 173.0 0.0 34.0 0.0 2.0 0.0 0.0 0.0 186.0 0.0 g 146.0 243.0 16.0 2.0 0.0 0.0 0.0 0.0 0.0 12.0 384.0 0.0 0.0 0.0 367.0 0.0 19.0 t 183.0 113.0 0.0 0.0 290.0 289.0 0.0 0.0 280.0 0.0 0.0 0.0 0.0 0.0 0.0 3.0 0.0

MA1625.2_shift4 (Stat5b)
; oligos_6nt_mkv3_m3 versus MA1625.2 (Stat5b); m=11/11; ncol2=9; w=-3; offset=-3; strand=D; shift=4; score=0.400753; ----TTCCcAGAA---- ; cor=; Ncor= a 0 0 0 0 51.0 92.0 32.0 74.0 462.0 2474.0 10.0 2554.0 2664.0 0 0 0 0 c 0 0 0 0 54.0 34.0 2666.0 2176.0 1746.0 60.0 16.0 35.0 25.0 0 0 0 0 g 0 0 0 0 51.0 34.0 23.0 43.0 127.0 150.0 2717.0 86.0 50.0 0 0 0 0 t 0 0 0 0 2604.0 2600.0 39.0 467.0 425.0 76.0 17.0 85.0 21.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m4_shift5 ; 31 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m4_shift5 (oligos_6nt_mkv3_m4)
; oligos_6nt_mkv3_m4; m=0 (reference); ncol1=10; shift=5; ncol=15; -----amAACAACaa ; Alignment reference a 0 0 0 0 0 64 36 135 135 0 134 135 0 59 46 c 0 0 0 0 0 27 49 0 0 131 0 0 135 31 31 g 0 0 0 0 0 23 29 0 0 0 0 0 0 16 30 t 0 0 0 0 0 21 21 0 0 4 1 0 0 29 28

MA1989.2_shift6 (Bcl11B)
; oligos_6nt_mkv3_m4 versus MA1989.2 (Bcl11B); m=1/30; ncol2=9; w=0; offset=1; strand=D; shift=6; score=0.64486; ------aAACCACAa ; cor=; Ncor= a 0 0 0 0 0 0 24743.0 31408.0 36130.0 1391.0 1058.0 36734.0 1718.0 36053.0 23689.0 c 0 0 0 0 0 0 5084.0 2339.0 1397.0 36798.0 37476.0 940.0 35985.0 1397.0 3546.0 g 0 0 0 0 0 0 3712.0 3044.0 1662.0 762.0 416.0 796.0 1217.0 1246.0 7120.0 t 0 0 0 0 0 0 6252.0 3000.0 602.0 840.0 841.0 1321.0 871.0 1095.0 5436.0

MA1655.2_shift6 (ZNF341)
; oligos_6nt_mkv3_m4 versus MA1655.2 (ZNF341); m=2/30; ncol2=8; w=0; offset=1; strand=D; shift=6; score=0.570026; ------GAACAGCc- ; cor=; Ncor= a 0 0 0 0 0 0 1504.0 17074.0 17700.0 301.0 17627.0 168.0 227.0 3082.0 0 c 0 0 0 0 0 0 2043.0 955.0 211.0 16813.0 399.0 359.0 18003.0 10946.0 0 g 0 0 0 0 0 0 13739.0 513.0 576.0 1033.0 468.0 17972.0 270.0 2289.0 0 t 0 0 0 0 0 0 1442.0 186.0 241.0 581.0 234.0 229.0 228.0 2411.0 0

MA0867.3_shift7 (SOX4)
; oligos_6nt_mkv3_m4 versus MA0867.3 (SOX4); m=3/30; ncol2=8; w=0; offset=2; strand=D; shift=7; score=0.56587; -------aACAAwGr ; cor=; Ncor= a 0 0 0 0 0 0 0 5582.0 5582.0 0.0 5582.0 5582.0 5582.0 1018.0 2093.0 c 0 0 0 0 0 0 0 951.0 0.0 5582.0 1.0 6.0 120.0 64.0 1422.0 g 0 0 0 0 0 0 0 2047.0 0.0 37.0 6.0 11.0 50.0 5582.0 3489.0 t 0 0 0 0 0 0 0 431.0 9.0 33.0 0.0 0.0 2719.0 83.0 174.0

MA0868.3_shift7 (SOX8)
; oligos_6nt_mkv3_m4 versus MA0868.3 (SOX8); m=4/30; ncol2=7; w=0; offset=2; strand=D; shift=7; score=0.531965; -------AACAATr- ; cor=; Ncor= a 0 0 0 0 0 0 0 1827.0 1827.0 3.0 1827.0 1827.0 273.0 1356.0 0 c 0 0 0 0 0 0 0 151.0 0.0 1827.0 0.0 43.0 36.0 208.0 0 g 0 0 0 0 0 0 0 263.0 0.0 35.0 0.0 0.0 20.0 1827.0 0 t 0 0 0 0 0 0 0 222.0 45.0 70.0 16.0 36.0 1827.0 287.0 0

MA0084.2_shift6 (SRY)
; oligos_6nt_mkv3_m4 versus MA0084.2 (SRY); m=5/30; ncol2=7; w=0; offset=1; strand=D; shift=6; score=0.526254; ------waACAAw-- ; cor=; Ncor= a 0 0 0 0 0 0 15.0 18.0 25.0 0.0 28.0 27.0 7.0 0 0 c 0 0 0 0 0 0 0.0 3.0 0.0 26.0 0.0 0.0 0.0 0 0 g 0 0 0 0 0 0 3.0 3.0 0.0 0.0 0.0 1.0 2.0 0 0 t 0 0 0 0 0 0 10.0 4.0 3.0 2.0 0.0 0.0 19.0 0 0

MA0614.1_shift4 (Foxj2)
; oligos_6nt_mkv3_m4 versus MA0614.1 (Foxj2); m=6/30; ncol2=8; w=-1; offset=-1; strand=D; shift=4; score=0.520626; ----rTAAACAa--- ; cor=; Ncor= a 0 0 0 0 461.0 50.0 795.0 977.0 999.0 0.0 999.0 593.0 0 0 0 c 0 0 0 0 0.0 25.0 205.0 0.0 0.0 954.0 0.0 125.0 0 0 0 g 0 0 0 0 538.0 0.0 0.0 0.0 0.0 0.0 0.0 125.0 0 0 0 t 0 0 0 0 0.0 924.0 0.0 22.0 0.0 46.0 0.0 156.0 0 0 0

MA1489.1_shift4 (FOXN3)
; oligos_6nt_mkv3_m4 versus MA1489.1 (FOXN3); m=7/30; ncol2=8; w=-1; offset=-1; strand=D; shift=4; score=0.520046; ----GTAAACAA--- ; cor=; Ncor= a 0 0 0 0 9.0 9.0 971.0 971.0 971.0 9.0 971.0 971.0 0 0 0 c 0 0 0 0 9.0 9.0 9.0 9.0 9.0 971.0 9.0 9.0 0 0 0 g 0 0 0 0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 0 0 0 t 0 0 0 0 9.0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 0 0 0

MA1152.2_rc_shift8 (SOX15_rc)
; oligos_6nt_mkv3_m4 versus MA1152.2_rc (SOX15_rc); m=8/30; ncol2=7; w=0; offset=3; strand=R; shift=8; score=0.518625; --------ACAAwrr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 971.0 5.0 994.0 988.0 362.0 501.0 267.0 c 0 0 0 0 0 0 0 0 3.0 890.0 2.0 6.0 5.0 26.0 147.0 g 0 0 0 0 0 0 0 0 2.0 21.0 2.0 3.0 3.0 412.0 554.0 t 0 0 0 0 0 0 0 0 24.0 83.0 3.0 3.0 631.0 62.0 32.0

MA1561.2_shift3 (SOX12)
; oligos_6nt_mkv3_m4 versus MA1561.2 (SOX12); m=9/30; ncol2=10; w=-2; offset=-2; strand=D; shift=3; score=0.488048; ---aCCGAACAAT-- ; cor=; Ncor= a 0 0 0 854.0 153.0 48.0 47.0 854.0 854.0 0.0 854.0 854.0 129.0 0 0 c 0 0 0 267.0 854.0 854.0 26.0 26.0 2.0 854.0 0.0 91.0 211.0 0 0 g 0 0 0 109.0 58.0 34.0 854.0 2.0 4.0 0.0 0.0 44.0 57.0 0 0 t 0 0 0 138.0 78.0 56.0 48.0 1.0 0.0 3.0 0.0 20.0 854.0 0 0

MA0667.1_shift7 (MYF6)
; oligos_6nt_mkv3_m4 versus MA0667.1 (MYF6); m=10/30; ncol2=10; w=0; offset=2; strand=D; shift=7; score=0.481465; -------AACArCTG ; cor=; Ncor= a 0 0 0 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 c 0 0 0 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 g 0 0 0 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 t 0 0 0 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0

MA0100.4_shift9 (MYB)
; oligos_6nt_mkv3_m4 versus MA0100.4 (MYB); m=11/30; ncol2=6; w=0; offset=4; strand=D; shift=9; score=0.480454; ---------CAACTG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0.0 1478.0 1519.0 0.0 1.0 8.0 c 0 0 0 0 0 0 0 0 0 1513.0 3.0 2.0 1527.0 60.0 3.0 g 0 0 0 0 0 0 0 0 0 5.0 39.0 0.0 0.0 68.0 1516.0 t 0 0 0 0 0 0 0 0 0 9.0 7.0 6.0 0.0 1398.0 0.0

MA0613.1_shift4 (FOXG1)
; oligos_6nt_mkv3_m4 versus MA0613.1 (FOXG1); m=12/30; ncol2=8; w=-1; offset=-1; strand=D; shift=4; score=0.477044; ----rTAAACAw--- ; cor=; Ncor= a 0 0 0 0 374.0 1.0 997.0 997.0 997.0 1.0 997.0 498.0 0 0 0 c 0 0 0 0 1.0 1.0 1.0 1.0 1.0 997.0 1.0 167.0 0 0 0 g 0 0 0 0 623.0 1.0 1.0 1.0 1.0 1.0 1.0 2.0 0 0 0 t 0 0 0 0 1.0 997.0 1.0 1.0 1.0 1.0 1.0 333.0 0 0 0

MA0848.1_shift4 (FOXO4)
; oligos_6nt_mkv3_m4 versus MA0848.1 (FOXO4); m=13/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.446901; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 1669.0 345.0 5378.0 5378.0 5378.0 58.0 5378.0 0 0 0 0 c 0 0 0 0 13.0 69.0 1259.0 146.0 0.0 5378.0 10.0 0 0 0 0 g 0 0 0 0 5378.0 123.0 32.0 19.0 90.0 33.0 10.0 0 0 0 0 t 0 0 0 0 0.0 5378.0 20.0 20.0 10.0 958.0 40.0 0 0 0 0

MA0030.2_shift3 (FOXF2)
; oligos_6nt_mkv3_m4 versus MA0030.2 (FOXF2); m=14/30; ncol2=9; w=-2; offset=-2; strand=D; shift=3; score=0.446054; ---sRTAAACAa--- ; cor=; Ncor= a 0 0 0 3.0 7.0 0.0 27.0 27.0 27.0 0.0 27.0 16.0 0 0 0 c 0 0 0 11.0 0.0 0.0 0.0 0.0 0.0 25.0 0.0 4.0 0 0 0 g 0 0 0 8.0 20.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 0 0 0 t 0 0 0 0.0 0.0 27.0 0.0 0.0 0.0 2.0 0.0 5.0 0 0 0

MA0480.3_shift4 (Foxo1)
; oligos_6nt_mkv3_m4 versus MA0480.3 (Foxo1); m=15/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.44356; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 1411.0 945.0 12408.0 12663.0 12972.0 293.0 13332.0 0 0 0 0 c 0 0 0 0 481.0 555.0 934.0 849.0 387.0 12710.0 277.0 0 0 0 0 g 0 0 0 0 11670.0 1025.0 478.0 384.0 508.0 356.0 153.0 0 0 0 0 t 0 0 0 0 554.0 11591.0 296.0 220.0 249.0 757.0 354.0 0 0 0 0

MA0849.1_shift4 (FOXO6)
; oligos_6nt_mkv3_m4 versus MA0849.1 (FOXO6); m=16/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.440627; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 1445.0 154.0 7025.0 7025.0 7025.0 0.0 7025.0 0 0 0 0 c 0 0 0 0 0.0 0.0 1147.0 195.0 0.0 7025.0 0.0 0 0 0 0 g 0 0 0 0 7025.0 32.0 7.0 0.0 0.0 31.0 13.0 0 0 0 0 t 0 0 0 0 0.0 7025.0 0.0 26.0 0.0 385.0 0.0 0 0 0 0

MA0157.4_shift4 (Foxo3)
; oligos_6nt_mkv3_m4 versus MA0157.4 (Foxo3); m=17/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.434444; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 3470.0 1546.0 22240.0 22288.0 22551.0 403.0 22141.0 0 0 0 0 c 0 0 0 0 590.0 435.0 968.0 803.0 483.0 21237.0 587.0 0 0 0 0 g 0 0 0 0 19202.0 1199.0 328.0 333.0 464.0 361.0 361.0 0 0 0 0 t 0 0 0 0 650.0 20732.0 376.0 488.0 414.0 1911.0 823.0 0 0 0 0

MA0852.3_shift4 (FOXK1)
; oligos_6nt_mkv3_m4 versus MA0852.3 (FOXK1); m=18/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.433885; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 143.0 60.0 1003.0 999.0 1022.0 10.0 1015.0 0 0 0 0 c 0 0 0 0 28.0 5.0 37.0 37.0 13.0 958.0 16.0 0 0 0 0 g 0 0 0 0 868.0 44.0 10.0 11.0 10.0 12.0 12.0 0 0 0 0 t 0 0 0 0 17.0 947.0 6.0 9.0 11.0 76.0 13.0 0 0 0 0

MA0593.2_shift3 (FOXP2)
; oligos_6nt_mkv3_m4 versus MA0593.2 (FOXP2); m=19/30; ncol2=9; w=-2; offset=-2; strand=D; shift=3; score=0.433842; ---wGTAAACAr--- ; cor=; Ncor= a 0 0 0 340.0 160.0 59.0 766.0 766.0 766.0 0.0 766.0 297.0 0 0 0 c 0 0 0 7.0 0.0 0.0 0.0 0.0 0.0 757.0 0.0 154.0 0 0 0 g 0 0 0 142.0 606.0 0.0 0.0 0.0 0.0 0.0 0.0 293.0 0 0 0 t 0 0 0 277.0 0.0 707.0 0.0 0.0 0.0 9.0 0.0 22.0 0 0 0

MA0033.2_shift4 (FOXL1)
; oligos_6nt_mkv3_m4 versus MA0033.2 (FOXL1); m=20/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.431946; ----rTAAACA---- ; cor=; Ncor= a 0 0 0 0 2102.0 10.0 4780.0 4780.0 4780.0 0.0 4780.0 0 0 0 0 c 0 0 0 0 13.0 416.0 628.0 38.0 82.0 3723.0 54.0 0 0 0 0 g 0 0 0 0 2678.0 0.0 57.0 0.0 50.0 0.0 0.0 0 0 0 0 t 0 0 0 0 140.0 4780.0 0.0 15.0 0.0 1057.0 17.0 0 0 0 0

MA0042.2_shift4 (FOXI1)
; oligos_6nt_mkv3_m4 versus MA0042.2 (FOXI1); m=21/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.430424; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 618.0 74.0 5175.0 5175.0 5175.0 157.0 5175.0 0 0 0 0 c 0 0 0 0 39.0 60.0 540.0 23.0 23.0 5175.0 12.0 0 0 0 0 g 0 0 0 0 5175.0 35.0 37.0 0.0 29.0 48.0 25.0 0 0 0 0 t 0 0 0 0 0.0 5175.0 0.0 0.0 66.0 810.0 0.0 0 0 0 0

MA2117.1_shift4 (FOXP4)
; oligos_6nt_mkv3_m4 versus MA2117.1 (FOXP4); m=22/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.428788; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 2224.0 543.0 19122.0 19613.0 20280.0 379.0 20230.0 0 0 0 0 c 0 0 0 0 834.0 793.0 1545.0 1330.0 419.0 18349.0 443.0 0 0 0 0 g 0 0 0 0 17315.0 539.0 534.0 368.0 550.0 493.0 218.0 0 0 0 0 t 0 0 0 0 1294.0 19792.0 466.0 356.0 418.0 2446.0 776.0 0 0 0 0

MA0850.1_shift4 (FOXP3)
; oligos_6nt_mkv3_m4 versus MA0850.1 (FOXP3); m=23/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.426944; ----rTAAACA---- ; cor=; Ncor= a 0 0 0 0 74.0 20.0 211.0 211.0 211.0 0.0 211.0 0 0 0 0 c 0 0 0 0 0.0 52.0 0.0 0.0 15.0 211.0 0.0 0 0 0 0 g 0 0 0 0 137.0 0.0 0.0 9.0 49.0 32.0 18.0 0 0 0 0 t 0 0 0 0 0.0 211.0 31.0 8.0 0.0 39.0 0.0 0 0 0 0

MA0031.2_shift4 (FOXD1)
; oligos_6nt_mkv3_m4 versus MA0031.2 (FOXD1); m=24/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.421093; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 1.0 0.0 19.0 20.0 18.0 1.0 20.0 0 0 0 0 c 0 0 0 0 1.0 0.0 1.0 0.0 1.0 18.0 0.0 0 0 0 0 g 0 0 0 0 17.0 0.0 0.0 0.0 1.0 0.0 0.0 0 0 0 0 t 0 0 0 0 1.0 20.0 0.0 0.0 0.0 1.0 0.0 0 0 0 0

MA1606.2_shift4 (Foxf1)
; oligos_6nt_mkv3_m4 versus MA1606.2 (Foxf1); m=25/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.419817; ----rTAAACA---- ; cor=; Ncor= a 0 0 0 0 18534.0 568.0 57293.0 53942.0 57167.0 437.0 56436.0 0 0 0 0 c 0 0 0 0 3754.0 446.0 899.0 2249.0 475.0 54394.0 745.0 0 0 0 0 g 0 0 0 0 33599.0 1158.0 445.0 811.0 1067.0 522.0 443.0 0 0 0 0 t 0 0 0 0 3653.0 57368.0 903.0 2538.0 831.0 4187.0 1916.0 0 0 0 0

MA1103.3_shift4 (FOXK2)
; oligos_6nt_mkv3_m4 versus MA1103.3 (FOXK2); m=26/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.414778; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 2697.0 360.0 15913.0 14387.0 15593.0 499.0 15709.0 0 0 0 0 c 0 0 0 0 551.0 210.0 277.0 1291.0 330.0 14282.0 295.0 0 0 0 0 g 0 0 0 0 12737.0 327.0 148.0 436.0 391.0 426.0 170.0 0 0 0 0 t 0 0 0 0 694.0 15782.0 341.0 565.0 365.0 1472.0 505.0 0 0 0 0

MA1683.2_shift4 (FOXA3)
; oligos_6nt_mkv3_m4 versus MA1683.2 (FOXA3); m=27/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.414745; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 4481.0 758.0 45178.0 43099.0 46046.0 951.0 45552.0 0 0 0 0 c 0 0 0 0 1464.0 903.0 1980.0 3883.0 973.0 39509.0 933.0 0 0 0 0 g 0 0 0 0 40396.0 690.0 636.0 977.0 934.0 1205.0 614.0 0 0 0 0 t 0 0 0 0 2596.0 46586.0 1143.0 978.0 984.0 7272.0 1838.0 0 0 0 0

MA0481.4_shift4 (FOXP1)
; oligos_6nt_mkv3_m4 versus MA0481.4 (FOXP1); m=28/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.41166; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 10463.0 1209.0 69603.0 65236.0 70030.0 1336.0 68456.0 0 0 0 0 c 0 0 0 0 1573.0 727.0 2095.0 5067.0 1487.0 61094.0 1904.0 0 0 0 0 g 0 0 0 0 59571.0 920.0 1073.0 1830.0 1132.0 1493.0 749.0 0 0 0 0 t 0 0 0 0 3111.0 71862.0 1947.0 2585.0 2069.0 10795.0 3609.0 0 0 0 0

MA0846.2_shift1 (FOXC2)
; oligos_6nt_mkv3_m4 versus MA0846.2 (FOXC2); m=29/30; ncol2=11; w=-4; offset=-4; strand=D; shift=1; score=0.407236; -wAwrTAAAYAw--- ; cor=; Ncor= a 0 8939.0 20456.0 11301.0 6418.0 2005.0 20456.0 20456.0 20456.0 31.0 20456.0 13296.0 0 0 0 c 0 1279.0 1652.0 3476.0 440.0 3773.0 6759.0 344.0 105.0 14435.0 101.0 2087.0 0 0 0 g 0 454.0 5093.0 3129.0 14038.0 321.0 87.0 81.0 279.0 68.0 328.0 1710.0 0 0 0 t 0 11517.0 2080.0 9155.0 136.0 20456.0 122.0 107.0 242.0 6021.0 215.0 7160.0 0 0 0

MA1487.3_shift0 (FOXE1)
; oligos_6nt_mkv3_m4 versus MA1487.3 (FOXE1); m=30/30; ncol2=12; w=-5; offset=-5; strand=D; shift=0; score=0.404554; yTAARyAAACAa--- ; cor=; Ncor= a 86.0 581.0 3126.0 2547.0 2255.0 587.0 3126.0 3126.0 3126.0 0.0 3126.0 2026.0 0 0 0 c 1646.0 43.0 28.0 113.0 117.0 1062.0 362.0 90.0 0.0 3126.0 32.0 392.0 0 0 0 g 57.0 0.0 402.0 116.0 871.0 17.0 0.0 0.0 23.0 0.0 18.0 258.0 0 0 0 t 1479.0 2545.0 43.0 579.0 27.0 2064.0 20.0 53.0 9.0 85.0 110.0 450.0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m2_shift1 (oligos_6nt_mkv3_m2)				; oligos_6nt_mkv3_m2; m=0 (reference); ncol1=10; shift=1; ncol=11; -mcACCACCas ; Alignment reference a 0 29 19 116 0 0 105 0 0 36 27 c 0 40 47 0 116 108 3 116 116 28 30 g 0 28 25 0 0 3 3 0 0 26 32 t 0 19 25 0 0 5 5 0 0 26 27
MA0694.2_shift1 (ZBTB7B)				; oligos_6nt_mkv3_m2 versus MA0694.2 (ZBTB7B); m=1/13; ncol2=10; w=0; offset=0; strand=D; shift=1; score=0.854728; -CGACCMCCga ; cor=; Ncor= a 0 144.0 394.0 1852.0 5.0 0.0 1852.0 5.0 0.0 803.0 1852.0 c 0 1852.0 19.0 238.0 1852.0 1852.0 820.0 1852.0 1852.0 474.0 295.0 g 0 224.0 1852.0 0.0 1.0 2.0 2.0 0.0 0.0 1852.0 221.0 t 0 54.0 78.0 3.0 0.0 0.0 3.0 1.0 7.0 305.0 365.0
MA1990.2_shift1 (Gli1)				; oligos_6nt_mkv3_m2 versus MA1990.2 (Gli1); m=2/13; ncol2=10; w=0; offset=0; strand=D; shift=1; score=0.790785; -rGACCACCCA ; cor=; Ncor= a 0 2124.0 113.0 3120.0 100.0 71.0 3653.0 38.0 559.0 153.0 3312.0 c 0 299.0 193.0 331.0 3744.0 3809.0 73.0 3827.0 3231.0 3566.0 188.0 g 0 1104.0 3535.0 498.0 88.0 74.0 87.0 75.0 145.0 110.0 251.0 t 0 476.0 162.0 54.0 71.0 49.0 190.0 63.0 68.0 174.0 252.0
MA0695.2_shift1 (ZBTB7C)				; oligos_6nt_mkv3_m2 versus MA0695.2 (ZBTB7C); m=3/13; ncol2=8; w=0; offset=0; strand=D; shift=1; score=0.740338; -cgACCACC-- ; cor=; Ncor= a 0 183.0 351.0 1018.0 39.0 0.0 1018.0 18.0 90.0 0 0 c 0 1018.0 128.0 225.0 1018.0 1018.0 269.0 1018.0 1018.0 0 0 g 0 215.0 1018.0 8.0 0.0 5.0 8.0 7.0 54.0 0 0 t 0 110.0 137.0 24.0 0.0 14.0 10.0 17.0 90.0 0 0
MA0734.4_shift2 (Gli2)				; oligos_6nt_mkv3_m2 versus MA0734.4 (Gli2); m=4/13; ncol2=9; w=0; offset=1; strand=D; shift=2; score=0.722435; --GACCACCCA ; cor=; Ncor= a 0 0 60.0 1920.0 44.0 8.0 2216.0 9.0 313.0 59.0 2101.0 c 0 0 96.0 227.0 2404.0 2464.0 40.0 2451.0 2145.0 2288.0 85.0 g 0 0 2251.0 337.0 27.0 13.0 82.0 12.0 20.0 77.0 193.0 t 0 0 85.0 8.0 17.0 7.0 154.0 20.0 14.0 68.0 113.0
MA1491.3_shift1 (GLI3)				; oligos_6nt_mkv3_m2 versus MA1491.3 (GLI3); m=5/13; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.521632; -rGACCACCCA ; cor=; Ncor= a 0 4051.0 9.0 8515.0 4.0 1.0 8515.0 1.0 727.0 29.0 8515.0 c 0 1748.0 3.0 365.0 8515.0 8515.0 236.0 8515.0 7788.0 8515.0 2.0 g 0 4464.0 8515.0 376.0 0.0 1.0 9.0 0.0 1.0 1.0 53.0 t 0 403.0 96.0 1.0 0.0 1.0 88.0 1.0 1.0 17.0 2.0
MA0103.4_shift5 (ZEB1)				; oligos_6nt_mkv3_m2 versus MA0103.4 (ZEB1); m=6/13; ncol2=6; w=0; offset=4; strand=D; shift=5; score=0.490629; -----CACCTG ; cor=; Ncor= a 0 0 0 0 0 114.0 19905.0 32.0 193.0 4.0 441.0 c 0 0 0 0 0 19195.0 0.0 19878.0 19257.0 501.0 178.0 g 0 0 0 0 0 158.0 223.0 97.0 649.0 355.0 19381.0 t 0 0 0 0 0 662.0 1.0 122.0 30.0 19269.0 129.0
MA0130.1_shift2 (ZNF354C)				; oligos_6nt_mkv3_m2 versus MA0130.1 (ZNF354C); m=7/13; ncol2=6; w=0; offset=1; strand=D; shift=2; score=0.484757; --mTCCAC--- ; cor=; Ncor= a 0 0 7.0 3.0 0.0 0.0 16.0 0.0 0 0 0 c 0 0 6.0 2.0 16.0 16.0 0.0 15.0 0 0 0 g 0 0 3.0 0.0 0.0 0.0 0.0 1.0 0 0 0 t 0 0 0.0 11.0 0.0 0.0 0.0 0.0 0 0 0
MA0820.2_shift5 (FIGLA)				; oligos_6nt_mkv3_m2 versus MA0820.2 (FIGLA); m=8/13; ncol2=6; w=0; offset=4; strand=D; shift=5; score=0.465542; -----CACCTG ; cor=; Ncor= a 0 0 0 0 0 0.0 1780.0 0.0 9.0 56.0 36.0 c 0 0 0 0 0 1780.0 46.0 1780.0 1780.0 0.0 33.0 g 0 0 0 0 0 0.0 0.0 527.0 311.0 17.0 1780.0 t 0 0 0 0 0 29.0 14.0 0.0 0.0 1780.0 65.0
MA0522.4_shift5 (TCF3)				; oligos_6nt_mkv3_m2 versus MA0522.4 (TCF3); m=9/13; ncol2=7; w=0; offset=4; strand=D; shift=5; score=0.445613; -----CACCTG ; cor=; Ncor= a 0 0 0 0 0 469.0 28916.0 309.0 1127.0 380.0 1089.0 c 0 0 0 0 0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 g 0 0 0 0 0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 t 0 0 0 0 0 705.0 375.0 950.0 283.0 27539.0 492.0
MA1648.2_shift5 (TCF12)				; oligos_6nt_mkv3_m2 versus MA1648.2 (TCF12); m=10/13; ncol2=7; w=0; offset=4; strand=D; shift=5; score=0.44532; -----CACCTG ; cor=; Ncor= a 0 0 0 0 0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 c 0 0 0 0 0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 g 0 0 0 0 0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 t 0 0 0 0 0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0
MA1558.2_rc_shift5 (SNAI1_rc)				; oligos_6nt_mkv3_m2 versus MA1558.2_rc (SNAI1_rc); m=11/13; ncol2=7; w=0; offset=4; strand=R; shift=5; score=0.443624; -----CACCTG ; cor=; Ncor= a 0 0 0 0 0 311.0 19982.0 28.0 306.0 568.0 340.0 c 0 0 0 0 0 19982.0 42.0 19982.0 19982.0 91.0 275.0 g 0 0 0 0 0 0.0 0.0 5.0 517.0 297.0 19982.0 t 0 0 0 0 0 706.0 38.0 72.0 1766.0 19982.0 446.0
MA0751.2_shift2 (ZIC4)				; oligos_6nt_mkv3_m2 versus MA0751.2 (ZIC4); m=12/13; ncol2=14; w=0; offset=1; strand=D; shift=2; score=0.428353; --krCCCCCyG ; cor=; Ncor= a 0 0 578.0 3013.0 315.0 209.0 614.0 8.0 114.0 24.0 1095.0 c 0 0 934.0 812.0 2870.0 2890.0 2757.0 2999.0 2985.0 2222.0 68.0 g 0 0 4126.0 1553.0 52.0 121.0 225.0 0.0 0.0 6.0 4795.0 t 0 0 1887.0 21.0 98.0 147.0 275.0 1.0 11.0 1078.0 69.0
MA2324.1_shift0 (BCL11A)				; oligos_6nt_mkv3_m2 versus MA2324.1 (BCL11A); m=13/13; ncol2=7; w=-1; offset=-1; strand=D; shift=0; score=0.410922; CTGACCA---- ; cor=; Ncor= a 343.0 180.0 125.0 5724.0 155.0 143.0 4495.0 0 0 0 0 c 5024.0 120.0 281.0 92.0 5855.0 5964.0 641.0 0 0 0 0 g 591.0 165.0 5747.0 100.0 141.0 55.0 385.0 0 0 0 0 t 307.0 5800.0 112.0 349.0 114.0 103.0 744.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv4_m1_shift1 (oligos_7nt_mkv4_m1)				; oligos_7nt_mkv4_m1; m=0 (reference); ncol1=11; shift=1; ncol=12; -wsTACAGTArw ; Alignment reference a 0 114 74 11 274 5 256 15 19 270 83 99 c 0 53 83 17 14 295 10 18 17 15 76 61 g 0 62 91 16 8 5 10 272 8 16 91 66 t 0 82 63 267 15 6 35 6 267 10 61 85
MA1580.1_shift1 (ZBTB32)				; oligos_7nt_mkv4_m1 versus MA1580.1 (ZBTB32); m=1/5; ncol2=10; w=0; offset=0; strand=D; shift=1; score=0.833394; -tGTACAGTaw- ; cor=; Ncor= a 0 882.0 356.0 5.0 3560.0 0.0 3556.0 0.0 0.0 2390.0 1559.0 0 c 0 764.0 3.0 1.0 5.0 3560.0 3.0 3.0 4.0 109.0 213.0 0 g 0 65.0 3057.0 3.0 0.0 1.0 4.0 3562.0 0.0 723.0 215.0 0 t 0 1849.0 156.0 3563.0 0.0 0.0 8.0 6.0 3558.0 339.0 1574.0 0
MA1542.2_rc_shift4 (OSR1_rc)				; oligos_7nt_mkv4_m1 versus MA1542.2_rc (OSR1_rc); m=2/5; ncol2=8; w=0; offset=3; strand=R; shift=4; score=0.588783; ----ACrGTAGC ; cor=; Ncor= a 0 0 0 0 4890.0 24.0 2787.0 0.0 444.0 4890.0 18.0 17.0 c 0 0 0 0 504.0 4890.0 5.0 0.0 38.0 0.0 0.0 4890.0 g 0 0 0 0 612.0 4.0 2103.0 4890.0 83.0 99.0 4890.0 235.0 t 0 0 0 0 407.0 62.0 0.0 10.0 4890.0 4.0 0.0 448.0
MA1585.2_shift4 (ZKSCAN1)				; oligos_7nt_mkv4_m1 versus MA1585.2 (ZKSCAN1); m=3/5; ncol2=9; w=0; offset=3; strand=D; shift=4; score=0.498329; ----AyAGTAGG ; cor=; Ncor= a 0 0 0 0 4633.0 187.0 6054.0 18.0 0.0 6079.0 12.0 13.0 c 0 0 0 0 456.0 2268.0 53.0 5.0 0.0 48.0 101.0 12.0 g 0 0 0 0 584.0 364.0 20.0 6092.0 0.0 0.0 5980.0 6075.0 t 0 0 0 0 454.0 3308.0 0.0 12.0 6127.0 0.0 34.0 27.0
MA1478.2_shift1 (DMRTA2)				; oligos_7nt_mkv4_m1 versus MA1478.2 (DMRTA2); m=4/5; ncol2=6; w=0; offset=0; strand=D; shift=1; score=0.434994; -GwTACA----- ; cor=; Ncor= a 0 0.0 727.0 578.0 1710.0 0.0 1710.0 0 0 0 0 0 c 0 1.0 527.0 147.0 9.0 1710.0 23.0 0 0 0 0 0 g 0 1710.0 10.0 29.0 71.0 0.0 78.0 0 0 0 0 0 t 0 6.0 983.0 1710.0 13.0 3.0 261.0 0 0 0 0 0
MA0610.2_rc_shift0 (DMRT3_rc)				; oligos_7nt_mkv4_m1 versus MA0610.2_rc (DMRT3_rc); m=5/5; ncol2=7; w=-1; offset=-1; strand=R; shift=0; score=0.410521; tGATACA----- ; cor=; Ncor= a 97.0 0.0 694.0 0.0 999.0 0.0 851.0 0 0 0 0 0 c 97.0 0.0 104.0 0.0 0.0 999.0 22.0 0 0 0 0 0 g 188.0 999.0 0.0 0.0 0.0 0.0 22.0 0 0 0 0 0 t 618.0 0.0 202.0 999.0 0.0 0.0 106.0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m3_shift7 (oligos_6nt_mkv3_m3)				; oligos_6nt_mkv3_m3; m=0 (reference); ncol1=10; shift=7; ncol=17; -------rvAGAAAGrr ; Alignment reference a 0 0 0 0 0 0 0 42 29 107 0 108 101 107 0 33 38 c 0 0 0 0 0 0 0 20 27 0 0 0 0 0 0 25 23 g 0 0 0 0 0 0 0 27 34 1 107 0 0 1 105 29 35 t 0 0 0 0 0 0 0 19 18 0 1 0 7 0 3 21 12
MA0508.4_rc_shift8 (PRDM1_rc)				; oligos_6nt_mkv3_m3 versus MA0508.4_rc (PRDM1_rc); m=1/11; ncol2=7; w=0; offset=1; strand=R; shift=8; score=0.654028; --------GAGAAAG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 660.0 49466.0 432.0 52619.0 50943.0 52905.0 829.0 0 0 c 0 0 0 0 0 0 0 0 290.0 1390.0 207.0 561.0 1011.0 826.0 701.0 0 0 g 0 0 0 0 0 0 0 0 52821.0 1076.0 53465.0 488.0 1346.0 467.0 52752.0 0 0 t 0 0 0 0 0 0 0 0 1710.0 3549.0 1377.0 1813.0 2181.0 1283.0 1199.0 0 0
MA2120.1_shift8 (ZNF184)				; oligos_6nt_mkv3_m3 versus MA2120.1 (ZNF184); m=2/11; ncol2=13; w=0; offset=1; strand=D; shift=8; score=0.585529; --------kaGAAAGrk ; cor=; Ncor= a 0 0 0 0 0 0 0 0 34.0 659.0 107.0 992.0 971.0 794.0 44.0 305.0 169.0 c 0 0 0 0 0 0 0 0 3.0 107.0 3.0 3.0 3.0 3.0 13.0 34.0 242.0 g 0 0 0 0 0 0 0 0 326.0 169.0 888.0 3.0 23.0 190.0 909.0 419.0 273.0 t 0 0 0 0 0 0 0 0 638.0 65.0 3.0 3.0 3.0 13.0 34.0 242.0 315.0
MA0869.3_shift7 (Sox11)				; oligos_6nt_mkv3_m3 versus MA0869.3 (Sox11); m=3/11; ncol2=8; w=0; offset=0; strand=D; shift=7; score=0.574354; -------GAACAAAG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1014.0 7912.0 9856.0 119.0 10020.0 9676.0 9276.0 506.0 0 0 c 0 0 0 0 0 0 0 764.0 766.0 100.0 9471.0 108.0 264.0 61.0 148.0 0 0 g 0 0 0 0 0 0 0 8063.0 1298.0 211.0 501.0 49.0 248.0 233.0 9486.0 0 0 t 0 0 0 0 0 0 0 407.0 272.0 81.0 157.0 71.0 60.0 678.0 108.0 0 0
MA0136.4_shift8 (Elf5)				; oligos_6nt_mkv3_m3 versus MA0136.4 (Elf5); m=4/11; ncol2=8; w=0; offset=1; strand=D; shift=8; score=0.57139; --------AAGGAAGT- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 29427.0 38778.0 512.0 587.0 40896.0 40552.0 2609.0 5180.0 0 c 0 0 0 0 0 0 0 0 6065.0 978.0 182.0 510.0 580.0 389.0 1234.0 3355.0 0 g 0 0 0 0 0 0 0 0 5204.0 2049.0 41025.0 40626.0 390.0 481.0 37803.0 4948.0 0 t 0 0 0 0 0 0 0 0 1450.0 341.0 427.0 423.0 280.0 724.0 500.0 28663.0 0
MA0867.3_shift8 (SOX4)				; oligos_6nt_mkv3_m3 versus MA0867.3 (SOX4); m=5/11; ncol2=8; w=0; offset=1; strand=D; shift=8; score=0.564046; --------aACAAwGr- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 5582.0 5582.0 0.0 5582.0 5582.0 5582.0 1018.0 2093.0 0 c 0 0 0 0 0 0 0 0 951.0 0.0 5582.0 1.0 6.0 120.0 64.0 1422.0 0 g 0 0 0 0 0 0 0 0 2047.0 0.0 37.0 6.0 11.0 50.0 5582.0 3489.0 0 t 0 0 0 0 0 0 0 0 431.0 9.0 33.0 0.0 0.0 2719.0 83.0 174.0 0
MA1709.2_shift5 (ZIM3)				; oligos_6nt_mkv3_m3 versus MA1709.2 (ZIM3); m=6/11; ncol2=11; w=-2; offset=-2; strand=D; shift=5; score=0.552566; -----mAACAGAAAcC- ; cor=; Ncor= a 0 0 0 0 0 5336.0 16896.0 16502.0 853.0 17067.0 194.0 15879.0 16933.0 14228.0 2482.0 1365.0 0 c 0 0 0 0 0 8338.0 118.0 107.0 15856.0 38.0 72.0 840.0 90.0 306.0 7474.0 15232.0 0 g 0 0 0 0 0 1327.0 106.0 229.0 435.0 39.0 16877.0 165.0 110.0 575.0 3674.0 109.0 0 t 0 0 0 0 0 2219.0 100.0 382.0 76.0 76.0 77.0 336.0 87.0 2111.0 3590.0 514.0 0
MA1623.2_shift4 (Stat2)				; oligos_6nt_mkv3_m3 versus MA1623.2 (Stat2); m=7/11; ncol2=10; w=-3; offset=-3; strand=D; shift=4; score=0.479002; ----gAAACAGAAA--- ; cor=; Ncor= a 0 0 0 0 969.0 3554.0 3736.0 3738.0 286.0 3146.0 152.0 3700.0 3747.0 3514.0 0 0 0 c 0 0 0 0 306.0 76.0 75.0 72.0 2907.0 151.0 45.0 49.0 45.0 147.0 0 0 0 g 0 0 0 0 2287.0 168.0 71.0 87.0 524.0 74.0 3707.0 163.0 98.0 157.0 0 0 0 t 0 0 0 0 397.0 161.0 77.0 62.0 242.0 588.0 55.0 47.0 69.0 141.0 0 0 0
MA0442.3_shift9 (SOX10)				; oligos_6nt_mkv3_m3 versus MA0442.3 (SOX10); m=8/11; ncol2=6; w=0; offset=2; strand=D; shift=9; score=0.463911; ---------ACAAAG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 2023.0 3.0 2029.0 1968.0 1959.0 10.0 0 0 c 0 0 0 0 0 0 0 0 0 4.0 1989.0 7.0 28.0 23.0 13.0 0 0 g 0 0 0 0 0 0 0 0 0 3.0 11.0 7.0 20.0 12.0 2012.0 0 0 t 0 0 0 0 0 0 0 0 0 25.0 52.0 12.0 39.0 61.0 20.0 0 0
MA2326.1_shift9 (IKZF2)				; oligos_6nt_mkv3_m3 versus MA2326.1 (IKZF2); m=9/11; ncol2=6; w=0; offset=2; strand=D; shift=9; score=0.461258; ---------AGGAAG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 11101.0 2.0 5.0 11264.0 11159.0 21.0 0 0 c 0 0 0 0 0 0 0 0 0 208.0 127.0 7.0 25.0 191.0 57.0 0 0 g 0 0 0 0 0 0 0 0 0 79.0 11244.0 11270.0 17.0 26.0 11273.0 0 0 t 0 0 0 0 0 0 0 0 0 6.0 21.0 112.0 88.0 18.0 43.0 0 0
MA0731.1_rc_shift0 (BCL6B_rc)				; oligos_6nt_mkv3_m3 versus MA0731.1_rc (BCL6B_rc); m=10/11; ncol2=17; w=-7; offset=-7; strand=R; shift=0; score=0.440193; kkAATTCCTAGAAAGCA ; cor=; Ncor= a 0.0 0.0 211.0 215.0 0.0 0.0 0.0 0.0 0.0 214.0 0.0 212.0 213.0 212.0 2.0 1.0 207.0 c 7.0 9.0 0.0 0.0 0.0 2.0 171.0 173.0 0.0 34.0 0.0 2.0 0.0 0.0 0.0 186.0 0.0 g 146.0 243.0 16.0 2.0 0.0 0.0 0.0 0.0 0.0 12.0 384.0 0.0 0.0 0.0 367.0 0.0 19.0 t 183.0 113.0 0.0 0.0 290.0 289.0 0.0 0.0 280.0 0.0 0.0 0.0 0.0 0.0 0.0 3.0 0.0
MA1625.2_shift4 (Stat5b)				; oligos_6nt_mkv3_m3 versus MA1625.2 (Stat5b); m=11/11; ncol2=9; w=-3; offset=-3; strand=D; shift=4; score=0.400753; ----TTCCcAGAA---- ; cor=; Ncor= a 0 0 0 0 51.0 92.0 32.0 74.0 462.0 2474.0 10.0 2554.0 2664.0 0 0 0 0 c 0 0 0 0 54.0 34.0 2666.0 2176.0 1746.0 60.0 16.0 35.0 25.0 0 0 0 0 g 0 0 0 0 51.0 34.0 23.0 43.0 127.0 150.0 2717.0 86.0 50.0 0 0 0 0 t 0 0 0 0 2604.0 2600.0 39.0 467.0 425.0 76.0 17.0 85.0 21.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m4_shift5 (oligos_6nt_mkv3_m4)				; oligos_6nt_mkv3_m4; m=0 (reference); ncol1=10; shift=5; ncol=15; -----amAACAACaa ; Alignment reference a 0 0 0 0 0 64 36 135 135 0 134 135 0 59 46 c 0 0 0 0 0 27 49 0 0 131 0 0 135 31 31 g 0 0 0 0 0 23 29 0 0 0 0 0 0 16 30 t 0 0 0 0 0 21 21 0 0 4 1 0 0 29 28
MA1989.2_shift6 (Bcl11B)				; oligos_6nt_mkv3_m4 versus MA1989.2 (Bcl11B); m=1/30; ncol2=9; w=0; offset=1; strand=D; shift=6; score=0.64486; ------aAACCACAa ; cor=; Ncor= a 0 0 0 0 0 0 24743.0 31408.0 36130.0 1391.0 1058.0 36734.0 1718.0 36053.0 23689.0 c 0 0 0 0 0 0 5084.0 2339.0 1397.0 36798.0 37476.0 940.0 35985.0 1397.0 3546.0 g 0 0 0 0 0 0 3712.0 3044.0 1662.0 762.0 416.0 796.0 1217.0 1246.0 7120.0 t 0 0 0 0 0 0 6252.0 3000.0 602.0 840.0 841.0 1321.0 871.0 1095.0 5436.0
MA1655.2_shift6 (ZNF341)				; oligos_6nt_mkv3_m4 versus MA1655.2 (ZNF341); m=2/30; ncol2=8; w=0; offset=1; strand=D; shift=6; score=0.570026; ------GAACAGCc- ; cor=; Ncor= a 0 0 0 0 0 0 1504.0 17074.0 17700.0 301.0 17627.0 168.0 227.0 3082.0 0 c 0 0 0 0 0 0 2043.0 955.0 211.0 16813.0 399.0 359.0 18003.0 10946.0 0 g 0 0 0 0 0 0 13739.0 513.0 576.0 1033.0 468.0 17972.0 270.0 2289.0 0 t 0 0 0 0 0 0 1442.0 186.0 241.0 581.0 234.0 229.0 228.0 2411.0 0
MA0867.3_shift7 (SOX4)				; oligos_6nt_mkv3_m4 versus MA0867.3 (SOX4); m=3/30; ncol2=8; w=0; offset=2; strand=D; shift=7; score=0.56587; -------aACAAwGr ; cor=; Ncor= a 0 0 0 0 0 0 0 5582.0 5582.0 0.0 5582.0 5582.0 5582.0 1018.0 2093.0 c 0 0 0 0 0 0 0 951.0 0.0 5582.0 1.0 6.0 120.0 64.0 1422.0 g 0 0 0 0 0 0 0 2047.0 0.0 37.0 6.0 11.0 50.0 5582.0 3489.0 t 0 0 0 0 0 0 0 431.0 9.0 33.0 0.0 0.0 2719.0 83.0 174.0
MA0868.3_shift7 (SOX8)				; oligos_6nt_mkv3_m4 versus MA0868.3 (SOX8); m=4/30; ncol2=7; w=0; offset=2; strand=D; shift=7; score=0.531965; -------AACAATr- ; cor=; Ncor= a 0 0 0 0 0 0 0 1827.0 1827.0 3.0 1827.0 1827.0 273.0 1356.0 0 c 0 0 0 0 0 0 0 151.0 0.0 1827.0 0.0 43.0 36.0 208.0 0 g 0 0 0 0 0 0 0 263.0 0.0 35.0 0.0 0.0 20.0 1827.0 0 t 0 0 0 0 0 0 0 222.0 45.0 70.0 16.0 36.0 1827.0 287.0 0
MA0084.2_shift6 (SRY)				; oligos_6nt_mkv3_m4 versus MA0084.2 (SRY); m=5/30; ncol2=7; w=0; offset=1; strand=D; shift=6; score=0.526254; ------waACAAw-- ; cor=; Ncor= a 0 0 0 0 0 0 15.0 18.0 25.0 0.0 28.0 27.0 7.0 0 0 c 0 0 0 0 0 0 0.0 3.0 0.0 26.0 0.0 0.0 0.0 0 0 g 0 0 0 0 0 0 3.0 3.0 0.0 0.0 0.0 1.0 2.0 0 0 t 0 0 0 0 0 0 10.0 4.0 3.0 2.0 0.0 0.0 19.0 0 0
MA0614.1_shift4 (Foxj2)				; oligos_6nt_mkv3_m4 versus MA0614.1 (Foxj2); m=6/30; ncol2=8; w=-1; offset=-1; strand=D; shift=4; score=0.520626; ----rTAAACAa--- ; cor=; Ncor= a 0 0 0 0 461.0 50.0 795.0 977.0 999.0 0.0 999.0 593.0 0 0 0 c 0 0 0 0 0.0 25.0 205.0 0.0 0.0 954.0 0.0 125.0 0 0 0 g 0 0 0 0 538.0 0.0 0.0 0.0 0.0 0.0 0.0 125.0 0 0 0 t 0 0 0 0 0.0 924.0 0.0 22.0 0.0 46.0 0.0 156.0 0 0 0
MA1489.1_shift4 (FOXN3)				; oligos_6nt_mkv3_m4 versus MA1489.1 (FOXN3); m=7/30; ncol2=8; w=-1; offset=-1; strand=D; shift=4; score=0.520046; ----GTAAACAA--- ; cor=; Ncor= a 0 0 0 0 9.0 9.0 971.0 971.0 971.0 9.0 971.0 971.0 0 0 0 c 0 0 0 0 9.0 9.0 9.0 9.0 9.0 971.0 9.0 9.0 0 0 0 g 0 0 0 0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 0 0 0 t 0 0 0 0 9.0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 0 0 0
MA1152.2_rc_shift8 (SOX15_rc)				; oligos_6nt_mkv3_m4 versus MA1152.2_rc (SOX15_rc); m=8/30; ncol2=7; w=0; offset=3; strand=R; shift=8; score=0.518625; --------ACAAwrr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 971.0 5.0 994.0 988.0 362.0 501.0 267.0 c 0 0 0 0 0 0 0 0 3.0 890.0 2.0 6.0 5.0 26.0 147.0 g 0 0 0 0 0 0 0 0 2.0 21.0 2.0 3.0 3.0 412.0 554.0 t 0 0 0 0 0 0 0 0 24.0 83.0 3.0 3.0 631.0 62.0 32.0
MA1561.2_shift3 (SOX12)				; oligos_6nt_mkv3_m4 versus MA1561.2 (SOX12); m=9/30; ncol2=10; w=-2; offset=-2; strand=D; shift=3; score=0.488048; ---aCCGAACAAT-- ; cor=; Ncor= a 0 0 0 854.0 153.0 48.0 47.0 854.0 854.0 0.0 854.0 854.0 129.0 0 0 c 0 0 0 267.0 854.0 854.0 26.0 26.0 2.0 854.0 0.0 91.0 211.0 0 0 g 0 0 0 109.0 58.0 34.0 854.0 2.0 4.0 0.0 0.0 44.0 57.0 0 0 t 0 0 0 138.0 78.0 56.0 48.0 1.0 0.0 3.0 0.0 20.0 854.0 0 0
MA0667.1_shift7 (MYF6)				; oligos_6nt_mkv3_m4 versus MA0667.1 (MYF6); m=10/30; ncol2=10; w=0; offset=2; strand=D; shift=7; score=0.481465; -------AACArCTG ; cor=; Ncor= a 0 0 0 0 0 0 0 444.0 444.0 0.0 444.0 159.0 12.0 11.0 0.0 c 0 0 0 0 0 0 0 12.0 18.0 444.0 3.0 30.0 353.0 0.0 2.0 g 0 0 0 0 0 0 0 70.0 24.0 0.0 7.0 256.0 35.0 0.0 444.0 t 0 0 0 0 0 0 0 7.0 1.0 0.0 0.0 12.0 56.0 444.0 0.0
MA0100.4_shift9 (MYB)				; oligos_6nt_mkv3_m4 versus MA0100.4 (MYB); m=11/30; ncol2=6; w=0; offset=4; strand=D; shift=9; score=0.480454; ---------CAACTG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0.0 1478.0 1519.0 0.0 1.0 8.0 c 0 0 0 0 0 0 0 0 0 1513.0 3.0 2.0 1527.0 60.0 3.0 g 0 0 0 0 0 0 0 0 0 5.0 39.0 0.0 0.0 68.0 1516.0 t 0 0 0 0 0 0 0 0 0 9.0 7.0 6.0 0.0 1398.0 0.0
MA0613.1_shift4 (FOXG1)				; oligos_6nt_mkv3_m4 versus MA0613.1 (FOXG1); m=12/30; ncol2=8; w=-1; offset=-1; strand=D; shift=4; score=0.477044; ----rTAAACAw--- ; cor=; Ncor= a 0 0 0 0 374.0 1.0 997.0 997.0 997.0 1.0 997.0 498.0 0 0 0 c 0 0 0 0 1.0 1.0 1.0 1.0 1.0 997.0 1.0 167.0 0 0 0 g 0 0 0 0 623.0 1.0 1.0 1.0 1.0 1.0 1.0 2.0 0 0 0 t 0 0 0 0 1.0 997.0 1.0 1.0 1.0 1.0 1.0 333.0 0 0 0
MA0848.1_shift4 (FOXO4)				; oligos_6nt_mkv3_m4 versus MA0848.1 (FOXO4); m=13/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.446901; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 1669.0 345.0 5378.0 5378.0 5378.0 58.0 5378.0 0 0 0 0 c 0 0 0 0 13.0 69.0 1259.0 146.0 0.0 5378.0 10.0 0 0 0 0 g 0 0 0 0 5378.0 123.0 32.0 19.0 90.0 33.0 10.0 0 0 0 0 t 0 0 0 0 0.0 5378.0 20.0 20.0 10.0 958.0 40.0 0 0 0 0
MA0030.2_shift3 (FOXF2)				; oligos_6nt_mkv3_m4 versus MA0030.2 (FOXF2); m=14/30; ncol2=9; w=-2; offset=-2; strand=D; shift=3; score=0.446054; ---sRTAAACAa--- ; cor=; Ncor= a 0 0 0 3.0 7.0 0.0 27.0 27.0 27.0 0.0 27.0 16.0 0 0 0 c 0 0 0 11.0 0.0 0.0 0.0 0.0 0.0 25.0 0.0 4.0 0 0 0 g 0 0 0 8.0 20.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 0 0 0 t 0 0 0 0.0 0.0 27.0 0.0 0.0 0.0 2.0 0.0 5.0 0 0 0
MA0480.3_shift4 (Foxo1)				; oligos_6nt_mkv3_m4 versus MA0480.3 (Foxo1); m=15/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.44356; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 1411.0 945.0 12408.0 12663.0 12972.0 293.0 13332.0 0 0 0 0 c 0 0 0 0 481.0 555.0 934.0 849.0 387.0 12710.0 277.0 0 0 0 0 g 0 0 0 0 11670.0 1025.0 478.0 384.0 508.0 356.0 153.0 0 0 0 0 t 0 0 0 0 554.0 11591.0 296.0 220.0 249.0 757.0 354.0 0 0 0 0
MA0849.1_shift4 (FOXO6)				; oligos_6nt_mkv3_m4 versus MA0849.1 (FOXO6); m=16/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.440627; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 1445.0 154.0 7025.0 7025.0 7025.0 0.0 7025.0 0 0 0 0 c 0 0 0 0 0.0 0.0 1147.0 195.0 0.0 7025.0 0.0 0 0 0 0 g 0 0 0 0 7025.0 32.0 7.0 0.0 0.0 31.0 13.0 0 0 0 0 t 0 0 0 0 0.0 7025.0 0.0 26.0 0.0 385.0 0.0 0 0 0 0
MA0157.4_shift4 (Foxo3)				; oligos_6nt_mkv3_m4 versus MA0157.4 (Foxo3); m=17/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.434444; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 3470.0 1546.0 22240.0 22288.0 22551.0 403.0 22141.0 0 0 0 0 c 0 0 0 0 590.0 435.0 968.0 803.0 483.0 21237.0 587.0 0 0 0 0 g 0 0 0 0 19202.0 1199.0 328.0 333.0 464.0 361.0 361.0 0 0 0 0 t 0 0 0 0 650.0 20732.0 376.0 488.0 414.0 1911.0 823.0 0 0 0 0
MA0852.3_shift4 (FOXK1)				; oligos_6nt_mkv3_m4 versus MA0852.3 (FOXK1); m=18/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.433885; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 143.0 60.0 1003.0 999.0 1022.0 10.0 1015.0 0 0 0 0 c 0 0 0 0 28.0 5.0 37.0 37.0 13.0 958.0 16.0 0 0 0 0 g 0 0 0 0 868.0 44.0 10.0 11.0 10.0 12.0 12.0 0 0 0 0 t 0 0 0 0 17.0 947.0 6.0 9.0 11.0 76.0 13.0 0 0 0 0
MA0593.2_shift3 (FOXP2)				; oligos_6nt_mkv3_m4 versus MA0593.2 (FOXP2); m=19/30; ncol2=9; w=-2; offset=-2; strand=D; shift=3; score=0.433842; ---wGTAAACAr--- ; cor=; Ncor= a 0 0 0 340.0 160.0 59.0 766.0 766.0 766.0 0.0 766.0 297.0 0 0 0 c 0 0 0 7.0 0.0 0.0 0.0 0.0 0.0 757.0 0.0 154.0 0 0 0 g 0 0 0 142.0 606.0 0.0 0.0 0.0 0.0 0.0 0.0 293.0 0 0 0 t 0 0 0 277.0 0.0 707.0 0.0 0.0 0.0 9.0 0.0 22.0 0 0 0
MA0033.2_shift4 (FOXL1)				; oligos_6nt_mkv3_m4 versus MA0033.2 (FOXL1); m=20/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.431946; ----rTAAACA---- ; cor=; Ncor= a 0 0 0 0 2102.0 10.0 4780.0 4780.0 4780.0 0.0 4780.0 0 0 0 0 c 0 0 0 0 13.0 416.0 628.0 38.0 82.0 3723.0 54.0 0 0 0 0 g 0 0 0 0 2678.0 0.0 57.0 0.0 50.0 0.0 0.0 0 0 0 0 t 0 0 0 0 140.0 4780.0 0.0 15.0 0.0 1057.0 17.0 0 0 0 0
MA0042.2_shift4 (FOXI1)				; oligos_6nt_mkv3_m4 versus MA0042.2 (FOXI1); m=21/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.430424; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 618.0 74.0 5175.0 5175.0 5175.0 157.0 5175.0 0 0 0 0 c 0 0 0 0 39.0 60.0 540.0 23.0 23.0 5175.0 12.0 0 0 0 0 g 0 0 0 0 5175.0 35.0 37.0 0.0 29.0 48.0 25.0 0 0 0 0 t 0 0 0 0 0.0 5175.0 0.0 0.0 66.0 810.0 0.0 0 0 0 0
MA2117.1_shift4 (FOXP4)				; oligos_6nt_mkv3_m4 versus MA2117.1 (FOXP4); m=22/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.428788; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 2224.0 543.0 19122.0 19613.0 20280.0 379.0 20230.0 0 0 0 0 c 0 0 0 0 834.0 793.0 1545.0 1330.0 419.0 18349.0 443.0 0 0 0 0 g 0 0 0 0 17315.0 539.0 534.0 368.0 550.0 493.0 218.0 0 0 0 0 t 0 0 0 0 1294.0 19792.0 466.0 356.0 418.0 2446.0 776.0 0 0 0 0
MA0850.1_shift4 (FOXP3)				; oligos_6nt_mkv3_m4 versus MA0850.1 (FOXP3); m=23/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.426944; ----rTAAACA---- ; cor=; Ncor= a 0 0 0 0 74.0 20.0 211.0 211.0 211.0 0.0 211.0 0 0 0 0 c 0 0 0 0 0.0 52.0 0.0 0.0 15.0 211.0 0.0 0 0 0 0 g 0 0 0 0 137.0 0.0 0.0 9.0 49.0 32.0 18.0 0 0 0 0 t 0 0 0 0 0.0 211.0 31.0 8.0 0.0 39.0 0.0 0 0 0 0
MA0031.2_shift4 (FOXD1)				; oligos_6nt_mkv3_m4 versus MA0031.2 (FOXD1); m=24/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.421093; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 1.0 0.0 19.0 20.0 18.0 1.0 20.0 0 0 0 0 c 0 0 0 0 1.0 0.0 1.0 0.0 1.0 18.0 0.0 0 0 0 0 g 0 0 0 0 17.0 0.0 0.0 0.0 1.0 0.0 0.0 0 0 0 0 t 0 0 0 0 1.0 20.0 0.0 0.0 0.0 1.0 0.0 0 0 0 0
MA1606.2_shift4 (Foxf1)				; oligos_6nt_mkv3_m4 versus MA1606.2 (Foxf1); m=25/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.419817; ----rTAAACA---- ; cor=; Ncor= a 0 0 0 0 18534.0 568.0 57293.0 53942.0 57167.0 437.0 56436.0 0 0 0 0 c 0 0 0 0 3754.0 446.0 899.0 2249.0 475.0 54394.0 745.0 0 0 0 0 g 0 0 0 0 33599.0 1158.0 445.0 811.0 1067.0 522.0 443.0 0 0 0 0 t 0 0 0 0 3653.0 57368.0 903.0 2538.0 831.0 4187.0 1916.0 0 0 0 0
MA1103.3_shift4 (FOXK2)				; oligos_6nt_mkv3_m4 versus MA1103.3 (FOXK2); m=26/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.414778; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 2697.0 360.0 15913.0 14387.0 15593.0 499.0 15709.0 0 0 0 0 c 0 0 0 0 551.0 210.0 277.0 1291.0 330.0 14282.0 295.0 0 0 0 0 g 0 0 0 0 12737.0 327.0 148.0 436.0 391.0 426.0 170.0 0 0 0 0 t 0 0 0 0 694.0 15782.0 341.0 565.0 365.0 1472.0 505.0 0 0 0 0
MA1683.2_shift4 (FOXA3)				; oligos_6nt_mkv3_m4 versus MA1683.2 (FOXA3); m=27/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.414745; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 4481.0 758.0 45178.0 43099.0 46046.0 951.0 45552.0 0 0 0 0 c 0 0 0 0 1464.0 903.0 1980.0 3883.0 973.0 39509.0 933.0 0 0 0 0 g 0 0 0 0 40396.0 690.0 636.0 977.0 934.0 1205.0 614.0 0 0 0 0 t 0 0 0 0 2596.0 46586.0 1143.0 978.0 984.0 7272.0 1838.0 0 0 0 0
MA0481.4_shift4 (FOXP1)				; oligos_6nt_mkv3_m4 versus MA0481.4 (FOXP1); m=28/30; ncol2=7; w=-1; offset=-1; strand=D; shift=4; score=0.41166; ----GTAAACA---- ; cor=; Ncor= a 0 0 0 0 10463.0 1209.0 69603.0 65236.0 70030.0 1336.0 68456.0 0 0 0 0 c 0 0 0 0 1573.0 727.0 2095.0 5067.0 1487.0 61094.0 1904.0 0 0 0 0 g 0 0 0 0 59571.0 920.0 1073.0 1830.0 1132.0 1493.0 749.0 0 0 0 0 t 0 0 0 0 3111.0 71862.0 1947.0 2585.0 2069.0 10795.0 3609.0 0 0 0 0
MA0846.2_shift1 (FOXC2)				; oligos_6nt_mkv3_m4 versus MA0846.2 (FOXC2); m=29/30; ncol2=11; w=-4; offset=-4; strand=D; shift=1; score=0.407236; -wAwrTAAAYAw--- ; cor=; Ncor= a 0 8939.0 20456.0 11301.0 6418.0 2005.0 20456.0 20456.0 20456.0 31.0 20456.0 13296.0 0 0 0 c 0 1279.0 1652.0 3476.0 440.0 3773.0 6759.0 344.0 105.0 14435.0 101.0 2087.0 0 0 0 g 0 454.0 5093.0 3129.0 14038.0 321.0 87.0 81.0 279.0 68.0 328.0 1710.0 0 0 0 t 0 11517.0 2080.0 9155.0 136.0 20456.0 122.0 107.0 242.0 6021.0 215.0 7160.0 0 0 0
MA1487.3_shift0 (FOXE1)				; oligos_6nt_mkv3_m4 versus MA1487.3 (FOXE1); m=30/30; ncol2=12; w=-5; offset=-5; strand=D; shift=0; score=0.404554; yTAARyAAACAa--- ; cor=; Ncor= a 86.0 581.0 3126.0 2547.0 2255.0 587.0 3126.0 3126.0 3126.0 0.0 3126.0 2026.0 0 0 0 c 1646.0 43.0 28.0 113.0 117.0 1062.0 362.0 90.0 0.0 3126.0 32.0 392.0 0 0 0 g 57.0 0.0 402.0 116.0 871.0 17.0 0.0 0.0 23.0 0.0 18.0 258.0 0 0 0 t 1479.0 2545.0 43.0 579.0 27.0 2064.0 20.0 53.0 9.0 85.0 110.0 450.0 0 0 0