RSAT - peak-motifs result

Analysis: brac145 (17/07/2026 07:40)

peak-motifs  -v 1 -title brac145 -i $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_vertebrates_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ

motif discovery
oligos_6nt_mkv3	oligos_6nt_mkv3_m1 assembly: taatta (sig=0.74; e-value=0.18) RC: taatta oligos_6nt_mkv3_m2 assembly: accacc (sig=0.55; e-value=0.28) RC: ggtggt oligos_6nt_mkv3_m3 assembly: agaaag (sig=0.35; e-value=0.45) RC: ctttct oligos_6nt_mkv3_m4 assembly: aacaac (sig=0.11; e-value=0.78) RC: gttgtt oligos_6nt_mkv3_m5 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv4	oligos_7nt_mkv4_m1 assembly: tacagta (sig=0.21; e-value=0.62) RC: tactgta oligos_7nt_mkv4_m2 : (sig=; e-value=1) RC: oligos_7nt_mkv4_m3 : (sig=; e-value=1) RC: oligos_7nt_mkv4_m4 : (sig=; e-value=1) RC: oligos_7nt_mkv4_m5 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv3_m1	k-mer sig=0.74; evalue=0.18 waTAATTAtw WATAATTATW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor waTAATTAtw Lhx1 MA1518.3 R 10 1.0000 0.808 0.808 NA NA LMX1B MA0703.3 D 8 0.8000 0.891 0.713 NA NA Alx1 MA0854.2 D 8 0.8000 0.882 0.705 NA NA Total matches= 103 (100 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 32 (22.07%) Max nb of predicted sites per peak: 12  (scahrs1_40:13852821-13853692) Mean nb of predicted sites per peak: 2.94	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv3_m2	k-mer sig=0.55; evalue=0.28 ccACCACCas STGGTGGTGG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ccACCACCas ZBTB7B MA0694.2 D 10 1.0000 0.855 0.855 NA NA Gli1 MA1990.2 D 10 1.0000 0.791 0.791 NA NA ZBTB7C MA0695.2 D 8 0.8000 0.925 0.740 NA NA Total matches= 13 (10 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 61 (42.07%) Max nb of predicted sites per peak: 5  (scahrs1_348:12786399-12787930) Mean nb of predicted sites per peak: 1.51	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv3_m3	k-mer sig=0.35; evalue=0.45 arAGAAAGrr YYCTTTCTYT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor arAGAAAGrr PRDM1 MA0508.4 R 7 0.7000 0.934 0.654 NA NA ZNF184 MA2120.1 D 9 0.6429 0.911 0.586 NA NA Sox11 MA0869.3 D 8 0.8000 0.718 0.574 NA NA Total matches= 11 (8 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 52 (35.86%) Max nb of predicted sites per peak: 6  (scahrs1_100:51673843-51674615) Mean nb of predicted sites per peak: 1.52	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv3_m4	k-mer sig=0.11; evalue=0.78 amAACAACaa TTGTTGTTKT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor amAACAACaa Bcl11B MA1989.2 D 9 0.9000 0.717 0.645 NA NA ZNF341 MA1655.2 D 8 0.8000 0.713 0.570 NA NA SOX4 MA0867.3 D 8 0.8000 0.707 0.566 NA NA Total matches= 30 (27 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 59 (40.69%) Max nb of predicted sites per peak: 9  (scahrs1_348:34020824-34022077) Mean nb of predicted sites per peak: 1.81	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_7nt_mkv4_m1	k-mer sig=0.21; evalue=0.62 wsTACAGTArw WYTACTGTASW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wsTACAGTArw ZBTB32 MA1580.1 D 10 0.9091 0.917 0.833 NA NA OSR1 MA1542.2 R 8 0.7273 0.810 0.589 NA NA ZKSCAN1 MA1585.2 D 8 0.6667 0.747 0.498 NA NA Total matches= 5 (2 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 24 (16.55%) Max nb of predicted sites per peak: 5  (scahrs1_146:232652-233264) Mean nb of predicted sites per peak: 1.71	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title brac145 -i $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_vertebrates_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ

Warning: Not a single pattern was found in file tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2026/07/17/peak-motifs.2026-07-17.073707_2026-07-17.073707_AexKPQ/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab