RSAT - peak-motifs result

Analysis: brac145 (17/07/2026 08:01)

peak-motifs  -v 1 -title brac145 -i $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.080046_2026-07-17.080046_JV0LIw/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_vertebrates_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.080046_2026-07-17.080046_JV0LIw

motif discovery
oligos_6nt_mkv2	oligos_6nt_mkv2_m1 assembly: gagaaat (sig=2.56; e-value=0.0028) RC: atttctc oligos_6nt_mkv2_m2 assembly: taataa (sig=1.17; e-value=0.068) RC: ttatta oligos_6nt_mkv2_m3 assembly: accacc (sig=0.00; e-value=1) RC: ggtggt oligos_6nt_mkv2_m4 assembly: taaaca (sig=0.00; e-value=1) RC: tgttta oligos_6nt_mkv2_m5 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv2	oligos_7nt_mkv2_m1 assembly: aaagaaa (sig=1.39; e-value=0.041) RC: tttcttt oligos_7nt_mkv2_m2 assembly: atttctc (sig=0.99; e-value=0.1) RC: gagaaat oligos_7nt_mkv2_m3 assembly: taaaata (sig=0.66; e-value=0.22) RC: tatttta oligos_7nt_mkv2_m4 : (sig=; e-value=1) RC: oligos_7nt_mkv2_m5 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_7nt_mkv2_m1	k-mer sig=1.39; evalue=0.041 rrAAAGAAAdr YHTTTCTTTYY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rrAAAGAAAdr ZIM3 MA1709.2 D 11 1.0000 0.709 0.709 NA NA STAT1::STAT2 MA0517.2 R 11 0.8462 0.706 0.597 NA NA Stat2 MA1623.2 D 9 0.7500 0.751 0.563 NA NA Total matches= 8 (5 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 12 (8.28%) Max nb of predicted sites per peak: 2  (BRAC1_support4_5::scahrs1_100:23421670-23421870) Mean nb of predicted sites per peak: 1.25	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_7nt_mkv2_m2	k-mer sig=0.99; evalue=0.1 ccATTTCTCyy RRGAGAAATGG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ccATTTCTCyy PRDM1 MA0508.4 D 7 0.6364 0.840 0.535 NA NA Stat2 MA1623.2 R 8 0.6154 0.732 0.450 NA NA ZNF184 MA2120.1 R 9 0.6000 0.720 0.432 NA NA Total matches= 4 (1 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 17 (11.72%) Max nb of predicted sites per peak: 2  (BRAC1_support4_131::scahrs1_54:18382499-18382699) Mean nb of predicted sites per peak: 1.06	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_7nt_mkv2_m3	k-mer sig=0.66; evalue=0.22 awTAAAATAmw WKTATTTTAWT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor awTAAAATAmw MEF2C MA0497.2 D 11 1.0000 0.773 0.773 NA NA MEF2A MA0052.5 D 10 0.9091 0.759 0.690 NA NA ZNF384 MA1125.2 D 8 0.7273 0.770 0.560 NA NA Total matches= 24 (21 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 13 (8.97%) Max nb of predicted sites per peak: 2  (BRAC1_support4_8::scahrs1_100:32026483-32026683) Mean nb of predicted sites per peak: 1.38	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title brac145 -i $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.080046_2026-07-17.080046_JV0LIw/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_vertebrates_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.080046_2026-07-17.080046_JV0LIw

Error: Cannot scale matrix with only null values
Error occurred on RSAT site: rsat; host server: rsat; admin: compbio@eead.csic.es

Warning: Matrix file is empty (file size is zero) $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.080046_2026-07-17.080046_JV0LIw/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_sig_matrices_rescaled.tf

Warning: Input file contained not a single matrix

Error: OpenInputFile: File tmp/www-data/2026/07/17/peak-motifs.2026-07-17.080046_2026-07-17.080046_JV0LIw/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_sig_sites.ft does not exist.
Error occurred on RSAT site: rsat; host server: rsat; admin: compbio@eead.csic.es

Warning: Matrix file is empty (file size is zero) $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.080046_2026-07-17.080046_JV0LIw/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices.tf

Warning: Input file contained not a single matrix

Warning: Matrix file is empty (file size is zero) $RSAT/public_html/tmp/www-data/2026/07/17/peak-motifs.2026-07-17.080046_2026-07-17.080046_JV0LIw/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices.tf

Warning: Input file contained not a single matrix

Warning: Not a single pattern was found in file tmp/www-data/2026/07/17/peak-motifs.2026-07-17.080046_2026-07-17.080046_JV0LIw/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2026/07/17/peak-motifs.2026-07-17.080046_2026-07-17.080046_JV0LIw/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab