; matrix-scan  -v 1 -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/07/20/matrix-scan_2026-07-20.161602_3nlXiW.matrix -pseudo 1 -decimals 1 -2str -origin end -bginput -markov 1 -bg_pseudo 0.01 -return limits -return sites -return pval -return rank -lth score 1 -uth pval 1e-4 -i $RSAT/public_html/tmp/www-data/2026/07/20/tmp_sequence_2026-07-20.161602_IJRifx.fasta -seq_format fasta -n score
; Slow counting mode            
; Input files
;	input	$RSAT/public_html/tmp/www-data/2026/07/20/tmp_sequence_2026-07-20.161602_IJRifx.fasta
; Matrix files
;	matrix 1	$RSAT/public_html/tmp/www-data/2026/07/20/matrix-scan_2026-07-20.161602_3nlXiW.matrix
; Sequence format      	fasta
; Pseudo counts        	1
; Background model
;	Method        	input
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26808
;		c	0.22317
;		g	0.23639
;		t	0.27237
; Thresholds	lower	upper
;	pval  	NA	0.0001
;	score 	1    	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight	Pval	ln_Pval	sig	rank	rank_pm
Nfe2l2	limit	START_END	D	-2200	-1	.	0	0	0	0
Nfe2l2	site	Spic	D	-2144	-2131	ACAAGGAGGAAGTA	10.2	4.1e-06	-12.395	5.383	1	1
Nfe2l2	site	Spic	D	-1041	-1028	AAATAGAGTAAGTA	7.0	3.5e-05	-10.266	4.458	2	2
Blvra	limit	START_END	D	-2200	-1	.	0	0	0	0
Hmox1	limit	START_END	D	-2200	-1	.	0	0	0	0
Vcam1	limit	START_END	D	-2200	-1	.	0	0	0	0
Vcam1	site	Spic	R	-1368	-1355	ATAAAAGGGAAGTT	6.3	5.3e-05	-9.846	4.276	1	1
Vcam1	site	Spic	R	-1672	-1659	CAACAGAGGAAGTG	5.9	6.6e-05	-9.620	4.178	2	2
Slc40a1	limit	START_END	D	-2200	-1	.	0	0	0	0
Slc40a1	site	Spic	R	-449	-436	AAAATGGGGTAGTA	7.8	2.1e-05	-10.772	4.678	1	1
Nqo1	limit	START_END	D	-2200	-1	.	0	0	0	0
Nqo1	site	Spic	R	-1353	-1340	GCAAAGCCGAAGTA	6.3	5.3e-05	-9.846	4.276	1	1
Gsr	limit	START_END	D	-2200	-1	.	0	0	0	0
Slc7a11	limit	START_END	D	-2200	-1	.	0	0	0	0
Slc7a11	site	Spic	R	-1163	-1150	CAAAGCCGGAAATT	5.4	8.8e-05	-9.341	4.057	1	1
Gclc	limit	START_END	D	-2200	-1	.	0	0	0	0
Gclc	site	Spic	D	-1478	-1465	CAAATGTGGAAGTC	5.3	9.3e-05	-9.287	4.033	1	1
Gas1	limit	START_END	D	-2200	-1	.	0	0	0	0
Cat	limit	START_END	D	-2200	-1	.	0	0	0	0
Cat	site	Spic	R	-2197	-2184	AAAATAAGGAAATA	5.3	9.3e-05	-9.287	4.033	1	1
Brf2	limit	START_END	D	-2200	-1	.	0	0	0	0
Brf2	site	Spic	D	-2097	-2084	AAAAAGGGGGAGTG	8.1	1.7e-05	-10.960	4.760	1	1
Brf2	site	Spic	R	-951	-938	TCAAAGAGGATGTA	5.4	8.8e-05	-9.341	4.057	2	2
;
; Matrices
;	matrix	name	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	Spic	14	4	1	-53.500	16.300	69.800	a:0.268 c:0.223 g:0.236 t:0.272 
; Number of sequences scanned	12
; Sum of sequence lengths	26400
; N residues           	0
; Matches per matrix
;	matrix	name	matches	scored
;	1	Spic           	11	52488
;		TOTAL          	11	52488
; Host name	rsat
; Job started	2026-07-20.161602
; Job done	2026-07-20.161607
; Seconds	5.04
;	user	5.04
;	system	0.03
;	cuser	0.12
;	csystem	0.01