/var/www/html/rsat/public_html/tmp/www-data/2026/07/22/compare-matrices_2026-07-22.144239_h5aUHg/compare-matrices.tab 
 compare-matrices  -v 1 -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/07/22/compare-matrices_2026-07-22.144239_h5aUHg/compare-matrices_query_matrices.transfac -file2 $RSAT/public_html/motif_databases/Cistrome/Cistrome_Athaliana.tf -format2 tf -strand DR -lth cor 0.7 -lth Ncor 0.4 -uth match_rank 50 -return cor,Ncor,logoDP,NsEucl,NSW,match_rank,matrix_id,matrix_name,width,strand,offset,consensus,alignments_1ton -o $RSAT/public_html/tmp/www-data/2026/07/22/compare-matrices_2026-07-22.144239_h5aUHg/compare-matrices.tab
 Program version       	1.118
 Slow mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2026/07/22/compare-matrices_2026-07-22.144239_h5aUHg/compare-matrices_query_matrices.transfac
	file2 	$RSAT/public_html/motif_databases/Cistrome/Cistrome_Athaliana.tf
 Output files
	prefix       	$RSAT/public_html/tmp/www-data/2026/07/22/compare-matrices_2026-07-22.144239_h5aUHg/compare-matrices
	html_index   	$RSAT/public_html/tmp/www-data/2026/07/22/compare-matrices_2026-07-22.144239_h5aUHg/compare-matrices_index.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/07/22/compare-matrices_2026-07-22.144239_h5aUHg/compare-matrices_alignments_1ton.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/07/22/compare-matrices_2026-07-22.144239_h5aUHg/compare-matrices_alignments_1ton.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/07/22/compare-matrices_2026-07-22.144239_h5aUHg/compare-matrices.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2026/07/22/compare-matrices_2026-07-22.144239_h5aUHg/compare-matrices.html
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2026/07/22/compare-matrices_2026-07-22.144239_h5aUHg/compare-matrices_query_matrices.transfac
		file1	1	17	37	wyhyTCACCAACCmCmh
	file2	862 matrices	$RSAT/public_html/motif_databases/Cistrome/Cistrome_Athaliana.tf
		file2		1		15		147		gawGATGAArmarad
		file2		2		6		218		CAAGCA
		file2		3		19		600		AAGcAAAwwmtAAGsAAAw
		file2		4		21		155		dTTTTgCTTAwdTTTTGCTTa
		file2		5		15		589		ahatrCATGCAwrya
		file2		6		16		600		yytkktCAGGTgwwwt
		file2		7		21		242		TTTaykkTTTTGGCGGGAAAA
		file2		8		29		575		ttttTTTTTTTTTTTTTTTTTTTTTTkTy
		file2		9		19		373		swktTTTTTTTTTTTTtkk
		file2		10		19		600		ggcgradrtkrCGGCGGmG
		file2		11		21		583		hwyckcCGCCGCmAtwtycry
		...	852 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	logoDP       	Dot product between the logo matrices.
	8	NSW          	Normalized Sandelin-Wasserman similarity. NSW = SW/w
	9	NsEucl       	relative Euclidian similarity. NsEucl = (max(dEucl) - dEucl)/max(dEucl)
	10	w1           	Width of the first matrix
	11	w2           	Width of the second matrix
	12	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	13	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	14	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	15	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	16	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	17	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	18	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
	19	consensus1   	IUPAC consensus of matrix 1 (dots represent non-aligned columns)
	20	consensus2   	IUPAC consensus of matrix 2 (dots represent non-aligned columns)
	21	rcor         	Matching rank for cor
	22	rNcor        	Matching rank for Ncor
	23	rlogoDP      	Matching rank for logoDP
	24	rNsEucl      	Matching rank for NsEucl
	25	rNSW         	Matching rank for NSW
	26	rank_mean    	Mean of the matching ranks on all selected metrics
	27	match_rank   	Rank of the match (sorting by rank_mean)
id1 id2 name1 name2 cor Ncor logoDP NSW NsEucl w1 w2 w W Wr wr1 wr2 strand offset consensus1 consensus2 rcor rNcor rlogoDP rNsEucl rNSW rank_mean match_rank
oligos_6-8nt_m1 MYB_tnt.MYB63_col_a_m1 oligos_6-8nt_m1oligos_6-8nt_m1 MYB_tnt.MYB63_col_a_m1 0.947 0.766 8.182 0.982 0.96733 17 21 17 21 0.8095 1.0000 0.8095 D -4 wyhyTCACCAACCmCmh ....whyyyCACCwACCmcmh 1 2 2 1 1 1.4000 1
oligos_6-8nt_m1 MYB_tnt.MYB13_colamp_a_m1 oligos_6-8nt_m1oligos_6-8nt_m1 MYB_tnt.MYB13_colamp_a_m1 0.904 0.603 8.264 0.962 0.94798 17 18 14 21 0.6667 0.8235 0.7778 D 3 ...yTCACCAACCmCmh yyCACCwACCmhww.... 6 22 1 6 6 8.2000 2
oligos_6-8nt_m1 MYB_tnt.MYB58_colamp_a_m1 oligos_6-8nt_m1oligos_6-8nt_m1 MYB_tnt.MYB58_colamp_a_m1 0.921 0.746 0.433 0.973 0.96046 17 21 17 21 0.8095 1.0000 0.8095 R 0 wyhyTCACCAACCmCmh WGYYYCACCWAMCMHHW.... 3 3 31 2 3 8.4000 3
oligos_6-8nt_m1 MYB_tnt.MYB58_col_a_m1 oligos_6-8nt_m1oligos_6-8nt_m1 MYB_tnt.MYB58_col_a_m1 0.911 0.804 0.265 0.967 0.95320 17 15 15 17 0.8824 0.8824 1.0000 R 1 .yhyTCACCAACCmCm. GTTYYACCWAMCMYH 4 1 39 4 4 10.4000 4
oligos_6-8nt_m1 MYB_tnt.MYB107_colamp_a_m1 oligos_6-8nt_m1oligos_6-8nt_m1 MYB_tnt.MYB107_colamp_a_m1 0.865 0.712 6.919 0.951 0.94102 17 14 14 17 0.8235 0.8235 1.0000 D 0 wyhyTCACCAACCm... wwgyyyACCwAmYw 12 4 17 10 9 10.4000 5
oligos_6-8nt_m1 C2H2_tnt.AT4G26030_col_a_m1 oligos_6-8nt_m1oligos_6-8nt_m1 C2H2_tnt.AT4G26030_col_a_m1 0.884 0.632 7.111 0.957 0.94666 17 19 15 21 0.7143 0.8824 0.7895 D -4 wyhyTCACCAACCmC.. ....wwyyyyACCwAmywy 9 17 12 7 8 10.6000 6
oligos_6-8nt_m1 MYB_tnt.MYB13_col_a_m1 oligos_6-8nt_m1oligos_6-8nt_m1 MYB_tnt.MYB13_col_a_m1 0.909 0.707 0.401 0.964 0.94943 17 15 14 18 0.7778 0.8235 0.9333 R 3 ...yTCACCAACCmCmh YYCACCWACCMHHW. 5 5 33 5 5 10.6000 7
oligos_6-8nt_m1 MYB_tnt.MYB93_colamp_a_m1 oligos_6-8nt_m1oligos_6-8nt_m1 MYB_tnt.MYB93_colamp_a_m1 0.892 0.610 6.968 0.959 0.94350 17 15 13 19 0.6842 0.7647 0.8667 D -2 wyhyTCACCAACC.... ..wwbyyyAMCwAmY 7 20 16 9 7 11.8000 8
oligos_6-8nt_m1 MYB_tnt.ATY19_col_a_m1 oligos_6-8nt_m1oligos_6-8nt_m1 MYB_tnt.ATY19_col_a_m1 0.939 0.548 6.682 0.976 0.95898 17 21 14 24 0.5833 0.8235 0.6667 D -7 wyhyTCACCAACCm... .......wyhyyCACCWACcm 2 33 19 3 2 11.8000 9
oligos_6-8nt_m1 MYB_tnt.MYB10_colamp_a_m1 oligos_6-8nt_m1oligos_6-8nt_m1 MYB_tnt.MYB10_colamp_a_m1 0.846 0.697 8.091 0.940 0.93475 17 14 14 17 0.8235 0.8235 1.0000 D 2 ..hyTCACCAACCmCm. yyyYACCwAmCwww 17 6 3 17 18 12.2000 10
oligos_6-8nt_m1 MYB_tnt.MYB99_col_a_m1 oligos_6-8nt_m1oligos_6-8nt_m1 MYB_tnt.MYB99_col_a_m1 0.854 0.653 7.193 0.940 0.93219 17 13 13 17 0.7647 0.7647 1.0000 D 2 ..hyTCACCAACCmC.. hyyyACCwAmyyh 15 11 10 18 19 14.6000 11
oligos_6-8nt_m1 MYB_tnt.MYB61_col_a_m1 oligos_6-8nt_m1oligos_6-8nt_m1 MYB_tnt.MYB61_col_a_m1 0.848 0.659 7.015 0.942 0.93548 17 15 14 18 0.7778 0.8235 0.9333 D 3 ...yTCACCAACCmCmh yyyAmCwACCammh. 16 10 15 16 17 14.8000 12
oligos_6-8nt_m1 MYB_tnt.MYB51_col_a_m1 oligos_6-8nt_m1oligos_6-8nt_m1 MYB_tnt.MYB51_col_a_m1 0.862 0.503 7.472 0.950 0.94028 17 21 14 24 0.5833 0.8235 0.6667 D -7 wyhyTCACCAACCm... .......whwyyyACCwACyw 13 36 6 11 11 15.4000 13
oligos_6-8nt_m1 MYB_tnt.MYB93_col_a_m1 oligos_6-8nt_m1oligos_6-8nt_m1 MYB_tnt.MYB93_col_a_m1 0.833 0.675 0.446 0.947 0.94397 17 21 17 21 0.8095 1.0000 0.8095 R 0 wyhyTCACCAACCmCmh WDKYYYAMCWAMYWHHM.... 19 7 29 8 15 15.6000 14
oligos_6-8nt_m1 MYB_tnt.MYB92_colamp_a_m1 oligos_6-8nt_m1oligos_6-8nt_m1 MYB_tnt.MYB92_colamp_a_m1 0.842 0.601 7.286 0.943 0.93850 17 19 15 21 0.7143 0.8824 0.7895 D -4 wyhyTCACCAACCmC.. ....wdkyyyACCwAmywh 18 24 7 15 16 16.0000 15
oligos_6-8nt_m1 MYB_tnt.MYB83_colamp_a_m1 oligos_6-8nt_m1oligos_6-8nt_m1 MYB_tnt.MYB83_colamp_a_m1 0.881 0.603 0.464 0.951 0.93876 17 15 13 19 0.6842 0.7647 0.8667 R 4 ....TCACCAACCmCmh YCACCWAMCWYWW.. 10 21 27 14 10 16.4000 16
oligos_6-8nt_m1 MYB_tnt.MYB55_colamp_a_m1 oligos_6-8nt_m1oligos_6-8nt_m1 MYB_tnt.MYB55_colamp_a_m1 0.856 0.666 0.271 0.948 0.93925 17 15 14 18 0.7778 0.8235 0.9333 R -1 wyhyTCACCAACCm... .WWHYYYAMCWAMCW 14 8 37 13 13 17.0000 17
oligos_6-8nt_m1 MYB_tnt.MYB10_col_a_m1 oligos_6-8nt_m1oligos_6-8nt_m1 MYB_tnt.MYB10_col_a_m1 0.870 0.641 0.340 0.950 0.93996 17 16 14 19 0.7368 0.8235 0.8750 R 3 ...yTCACCAACCmCmh YYYACCWAMCHHWH.. 11 14 36 12 12 17.0000 18
oligos_6-8nt_m1 MYB_tnt.MYB61_colamp_a_m1 oligos_6-8nt_m1oligos_6-8nt_m1 MYB_tnt.MYB61_colamp_a_m1 0.832 0.636 7.253 0.932 0.92768 17 13 13 17 0.7647 0.7647 1.0000 D 2 ..hyTCACCAACCmC.. yyyyACCwAMCwy 20 15 8 24 21 17.6000 19
oligos_6-8nt_m1 MYB_tnt.MYB83_col_a_m1 oligos_6-8nt_m1oligos_6-8nt_m1 MYB_tnt.MYB83_col_a_m1 0.891 0.576 0.596 0.947 0.93085 17 11 11 17 0.6471 0.6471 1.0000 R 4 ....TCACCAACCmC.. YCACCAACMMC 8 30 24 21 14 19.4000 20
oligos_6-8nt_m1 MYB_tnt.MYB40_col_a_m1 oligos_6-8nt_m1oligos_6-8nt_m1 MYB_tnt.MYB40_col_a_m1 0.810 0.619 7.631 0.923 0.92281 17 13 13 17 0.7647 0.7647 1.0000 D 3 ...yTCACCAACCmCm. yyyACCwAmywty 23 18 5 28 25 19.8000 21
oligos_6-8nt_m1 MYB_tnt.MYB55_col_m1 oligos_6-8nt_m1oligos_6-8nt_m1 MYB_tnt.MYB55_col_m1 0.801 0.659 6.558 0.924 0.92638 17 14 14 17 0.8235 0.8235 1.0000 D 2 ..hyTCACCAACCmCm. yyycAmCmACCacm 26 9 20 25 23 20.6000 22
oligos_6-8nt_m1 MYB_tnt.MYB17_colamp_a_m1 oligos_6-8nt_m1oligos_6-8nt_m1 MYB_tnt.MYB17_colamp_a_m1 0.829 0.645 0.434 0.934 0.93134 17 15 14 18 0.7778 0.8235 0.9333 R 3 ...yTCACCAACCmCmh YYYACCTACCWWHW. 21 13 30 20 20 20.8000 23
oligos_6-8nt_m1 MYB_tnt.MYB107_col_a_m1 oligos_6-8nt_m1oligos_6-8nt_m1 MYB_tnt.MYB107_col_a_m1 0.802 0.602 0.542 0.930 0.93169 17 18 15 20 0.7500 0.8824 0.8333 R -3 wyhyTCACCAACCmC.. ...TWGYYCACCWAMYWW 25 23 25 19 22 22.8000 24
oligos_6-8nt_m1 ND_tnt.ASHR1_col_a_m1 oligos_6-8nt_m1oligos_6-8nt_m1 ND_tnt.ASHR1_col_a_m1 0.783 0.536 7.849 0.917 0.91986 17 15 13 19 0.6842 0.7647 0.8667 D -2 wyhyTCACCAACC.... ..atcwTCACCAtca 28 34 4 33 28 25.4000 25
oligos_6-8nt_m1 MYB_tnt.MYB49_col_a_m1 oligos_6-8nt_m1oligos_6-8nt_m1 MYB_tnt.MYB49_col_a_m1 0.734 0.648 6.702 0.906 0.92097 17 15 15 17 0.8824 0.8824 1.0000 D 0 wyhyTCACCAACCmC.. twkyyyACCWAmyww 33 12 18 31 34 25.6000 26
oligos_6-8nt_m1 MYBrelated_tnt.AT1G18960_col_a_m1 oligos_6-8nt_m1oligos_6-8nt_m1 MYBrelated_tnt.AT1G18960_col_a_m1 0.725 0.560 7.142 0.912 0.92813 17 22 17 22 0.7727 1.0000 0.7727 D -4 wyhyTCACCAACCmCmh ....awhwwCAmCAACawyah. 35 32 11 22 31 26.2000 27
oligos_6-8nt_m1 MYB_tnt.MYB99_colamp_a_m1 oligos_6-8nt_m1oligos_6-8nt_m1 MYB_tnt.MYB99_colamp_a_m1 0.816 0.528 7.033 0.918 0.91385 17 11 11 17 0.6471 0.6471 1.0000 D 3 ...yTCACCAACCm... yyyACCTAmyt 22 35 14 36 27 26.8000 28
oligos_6-8nt_m1 MYB_tnt.MYB43_col_a_m1 oligos_6-8nt_m1oligos_6-8nt_m1 MYB_tnt.MYB43_col_a_m1 0.808 0.618 0.266 0.922 0.92231 17 13 13 17 0.7647 0.7647 1.0000 R 2 ..hyTCACCAACCmC.. YYTYACCWAMYWT 24 19 38 29 26 27.2000 29
oligos_6-8nt_m1 MYB_tnt.MYB4_col200_a_m1 oligos_6-8nt_m1oligos_6-8nt_m1 MYB_tnt.MYB4_col200_a_m1 0.771 0.600 0.467 0.915 0.92224 17 15 14 18 0.7778 0.8235 0.9333 R 3 ...yTCACCAACCmCmh YYYACCWAMYWWWW. 29 26 26 30 29 28.0000 30
oligos_6-8nt_m1 MYB_tnt.MYB96_colamp_a_m1 oligos_6-8nt_m1oligos_6-8nt_m1 MYB_tnt.MYB96_colamp_a_m1 0.716 0.580 4.266 0.912 0.92791 17 21 17 21 0.8095 1.0000 0.8095 D -1 wyhyTCACCAACCmCmh .hmamyymcCAACyAccw... 37 29 21 23 33 28.6000 31
oligos_6-8nt_m1 MYB_tnt.MYB74_colamp_a_m1 oligos_6-8nt_m1oligos_6-8nt_m1 MYB_tnt.MYB74_colamp_a_m1 0.768 0.633 0.369 0.912 0.92063 17 14 14 17 0.8235 0.8235 1.0000 R 2 ..hyTCACCAACCmCm. TYYYACCTAMYWWW 30 16 35 32 32 29.0000 32
oligos_6-8nt_m1 MYB_tnt.MYB41_col_a_m1 oligos_6-8nt_m1oligos_6-8nt_m1 MYB_tnt.MYB41_col_a_m1 0.722 0.562 7.037 0.898 0.91468 17 15 14 18 0.7778 0.8235 0.9333 D -1 wyhyTCACCAACCm... .twgttyACCTAmyt 36 31 13 35 36 30.2000 33
oligos_6-8nt_m1 MYB_tnt.MYB74_col_m1 oligos_6-8nt_m1oligos_6-8nt_m1 MYB_tnt.MYB74_col_m1 0.705 0.581 7.223 0.888 0.91056 17 14 14 17 0.8235 0.8235 1.0000 D 2 ..hyTCACCAACCmCm. yyyyACCTAmywwh 40 28 9 38 38 30.6000 34
oligos_6-8nt_m1 MYB_tnt.MYB39_colamp_a_m1 oligos_6-8nt_m1oligos_6-8nt_m1 MYB_tnt.MYB39_colamp_a_m1 0.755 0.492 0.463 0.915 0.92454 17 21 15 23 0.6522 0.8824 0.7143 R 2 ..hyTCACCAACCmCmh KYYYACCWAMYWWYW...... 32 37 28 27 30 30.8000 35
oligos_6-8nt_m1 MYB_tnt.MYB67_col_a_m1 oligos_6-8nt_m1oligos_6-8nt_m1 MYB_tnt.MYB67_col_a_m1 0.796 0.464 0.164 0.923 0.92573 17 21 14 24 0.5833 0.8235 0.6667 R 3 ...yTCACCAACCmCmh YCYACCWAMCAYHW....... 27 39 40 26 24 31.2000 36
oligos_6-8nt_m1 MYB_tnt.MYB49_colamp_a_m1 oligos_6-8nt_m1oligos_6-8nt_m1 MYB_tnt.MYB49_colamp_a_m1 0.729 0.601 0.415 0.898 0.91484 17 14 14 17 0.8235 0.8235 1.0000 R 2 ..hyTCACCAACCmCm. KYTYACCTAMYWWT 34 25 32 34 35 32.0000 37
oligos_6-8nt_m1 MYB_tnt.MYB39_col_a_m1 oligos_6-8nt_m1oligos_6-8nt_m1 MYB_tnt.MYB39_col_a_m1 0.713 0.587 0.400 0.891 0.91172 17 14 14 17 0.8235 0.8235 1.0000 R 2 ..hyTCACCAACCmCm. TYYYACCTAMYWTW 38 27 34 37 37 34.6000 38
oligos_6-8nt_m1 MYB_tnt.MYB92_100ng20cy_b_m1 oligos_6-8nt_m1oligos_6-8nt_m1 MYB_tnt.MYB92_100ng20cy_b_m1 0.760 0.447 1.766 0.886 0.89341 17 10 10 17 0.5882 0.5882 1.0000 R 3 ...yTCACCAACC.... YYYACCTAMC 31 40 23 40 40 34.8000 39
oligos_6-8nt_m1 MYB_tnt.MYB30_col_a_m1 oligos_6-8nt_m1oligos_6-8nt_m1 MYB_tnt.MYB30_col_a_m1 0.709 0.485 4.111 0.887 0.90682 17 15 13 19 0.6842 0.7647 0.8667 D 4 ....TCACCAACCmCmh yymcCAACyACCa.. 39 38 22 39 39 35.4000 40 
 Host name	rsat
 Job started	2026-07-22.144240
 Job done	2026-07-22.144252
 Seconds	4.85
	user	4.85
	system	0.47
	cuser	5.98
;	csystem	1.17