One-to-n alignments

Command: compare-matrices  -v 1 -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/07/22/compare-matrices_2026-07-22.144239_h5aUHg/compare-matrices_query_matrices.transfac -file2 $RSAT/public_html/motif_databases/Cistrome/Cistrome_Athaliana.tf -format2 tf -strand DR -lth cor 0.7 -lth Ncor 0.4 -uth match_rank 50 -return cor,Ncor,logoDP,NsEucl,NSW,match_rank,matrix_id,matrix_name,width,strand,offset,consensus,alignments_1ton -o $RSAT/public_html/tmp/www-data/2026/07/22/compare-matrices_2026-07-22.144239_h5aUHg/compare-matrices.tab

One-to-n matrix alignment; reference matrix: oligos_6-8nt_m1_shift7 ; 41 matrices ; sort_field=rank_mean

Matrix nameAligned logoscor Ncor logoDP NsEucl NSW rcor rNcor rlogoDP rNsEucl rNSW rank_mean match_rank Aligned matrices
oligos_6-8nt_m1_shift7 (oligos_6-8nt_m1oligos_6-8nt_m1)                         
; oligos_6-8nt_m1 (oligos_6-8nt_m1oligos_6-8nt_m1); m=0 (reference); ncol1=17; shift=7; ncol=24; -------wyhyTCACCAACCmCmh
; Alignment reference
a	0	0	0	0	0	0	0	17	7	10	3	3	0	35	0	0	28	36	7	0	12	1	10	13
c	0	0	0	0	0	0	0	7	11	13	18	3	35	0	35	36	2	0	27	32	19	30	16	10
g	0	0	0	0	0	0	0	1	8	4	2	0	0	0	0	0	0	1	2	2	4	1	4	3
t	0	0	0	0	0	0	0	12	11	10	14	31	2	2	2	1	7	0	1	3	2	5	7	11
MYB_tnt.MYB63_col_a_m1_shift3 (MYB_tnt.MYB63_col_a_m1) 0.947 0.766 8.182 0.967 0.982 1 2 2 1 1 1.400 1 
; oligos_6-8nt_m1 versus MYB_tnt.MYB63_col_a_m1; m=1/40; ncol2=21; w=-4; offset=-4; strand=D; shift=3; score=    1.4; ---ywmywhyyyCACCwACCmcmh
; cor=0.947; Ncor=0.766; logoDP=8.182; NsEucl=0.967; NSW=0.982; rcor=1; rNcor=2; rlogoDP=2; rNsEucl=1; rNSW=1; rank_mean=1.400; match_rank=1
a	0	0	0	124	186	190	145	181	174	120	95	43	0	589	45	0	397	589	92	8	202	103	191	193
c	0	0	0	236	138	167	204	129	158	230	198	279	477	4	546	593	4	0	493	452	276	399	202	162
g	0	0	0	77	110	92	50	86	97	74	60	21	3	0	2	0	9	4	0	0	44	7	62	89
t	0	0	0	156	159	144	194	197	164	169	240	250	113	0	0	0	183	0	8	133	71	84	138	149
MYB_tnt.MYB13_colamp_a_m1_shift10 (MYB_tnt.MYB13_colamp_a_m1) 0.904 0.603 8.264 0.948 0.962 6 22 1 6 6 8.200 2 
; oligos_6-8nt_m1 versus MYB_tnt.MYB13_colamp_a_m1; m=2/40; ncol2=18; w=0; offset=3; strand=D; shift=10; score=    8.2; ----------yyCACCwACCmhww
; cor=0.904; Ncor=0.603; logoDP=8.264; NsEucl=0.948; NSW=0.962; rcor=6; rNcor=22; rlogoDP=1; rNsEucl=6; rNSW=6; rank_mean=8.200; match_rank=2
a	0	0	0	0	0	0	0	0	0	0	72	53	5	588	31	0	339	587	125	0	297	161	210	180
c	0	0	0	0	0	0	0	0	0	0	201	285	456	0	556	588	3	0	463	506	151	196	145	143
g	0	0	0	0	0	0	0	0	0	0	77	21	0	0	1	0	0	0	0	0	53	39	71	99
t	0	0	0	0	0	0	0	0	0	0	238	229	127	0	0	0	246	1	0	82	87	192	162	166
MYB_tnt.MYB58_colamp_a_m1_rc_shift7 (MYB_tnt.MYB58_colamp_a_m1_rc) 0.921 0.746 0.433 0.960 0.973 3 3 31 2 3 8.400 3 
; oligos_6-8nt_m1 versus MYB_tnt.MYB58_colamp_a_m1_rc; m=3/40; ncol2=21; w=0; offset=0; strand=R; shift=7; score=    8.4; -------wgyyyCACCWAMCmhhw
; cor=0.921; Ncor=0.746; logoDP=0.433; NsEucl=0.960; NSW=0.973; rcor=3; rNcor=3; rlogoDP=31; rNsEucl=2; rNSW=3; rank_mean=8.400; match_rank=3
a	0	0	0	0	0	0	0	206	145	109	67	90	7	600	62	0	422	600	172	4	226	151	188	208
c	0	0	0	0	0	0	0	114	125	176	178	230	443	0	538	599	1	0	426	462	196	260	169	127
g	0	0	0	0	0	0	0	73	189	130	53	40	3	0	0	0	1	0	0	0	50	18	73	85
t	0	0	0	0	0	0	0	207	141	185	302	240	147	0	0	1	176	0	2	134	128	171	170	180
MYB_tnt.MYB58_col_a_m1_rc_shift8 (MYB_tnt.MYB58_col_a_m1_rc) 0.911 0.804 0.265 0.953 0.967 4 1 39 4 4 10.400 4 
; oligos_6-8nt_m1 versus MYB_tnt.MYB58_col_a_m1_rc; m=4/40; ncol2=15; w=0; offset=1; strand=R; shift=8; score=   10.4; --------gttyYACCWAMCmyh-
; cor=0.911; Ncor=0.804; logoDP=0.265; NsEucl=0.953; NSW=0.967; rcor=4; rNcor=1; rlogoDP=39; rNsEucl=4; rNSW=4; rank_mean=10.400; match_rank=4
a	0	0	0	0	0	0	0	0	145	115	58	75	1	598	71	0	413	599	184	4	240	142	184	0
c	0	0	0	0	0	0	0	0	120	147	147	219	428	1	529	599	1	0	414	452	179	241	169	0
g	0	0	0	0	0	0	0	0	191	140	51	44	4	1	0	0	2	1	0	0	48	27	66	0
t	0	0	0	0	0	0	0	0	144	198	344	262	167	0	0	1	184	0	2	144	133	190	181	0
MYB_tnt.MYB107_colamp_a_m1_shift7 (MYB_tnt.MYB107_colamp_a_m1) 0.865 0.712 6.919 0.941 0.951 12 4 17 10 9 10.400 5 
; oligos_6-8nt_m1 versus MYB_tnt.MYB107_colamp_a_m1; m=5/40; ncol2=14; w=0; offset=0; strand=D; shift=7; score=   10.4; -------wwgyyyACCwAmYw---
; cor=0.865; Ncor=0.712; logoDP=6.919; NsEucl=0.941; NSW=0.951; rcor=12; rNcor=4; rlogoDP=17; rNsEucl=10; rNSW=9; rank_mean=10.400; match_rank=5
a	0	0	0	0	0	0	0	193	191	68	40	45	23	595	101	0	215	594	243	10	214	0	0	0
c	0	0	0	0	0	0	0	88	87	113	178	169	363	0	486	595	35	0	352	407	104	0	0	0
g	0	0	0	0	0	0	0	18	135	279	80	39	51	0	5	0	3	1	0	0	39	0	0	0
t	0	0	0	0	0	0	0	296	182	135	297	342	158	0	3	0	342	0	0	178	238	0	0	0
C2H2_tnt.AT4G26030_col_a_m1_shift3 (C2H2_tnt.AT4G26030_col_a_m1) 0.884 0.632 7.111 0.947 0.957 9 17 12 7 8 10.600 6 
; oligos_6-8nt_m1 versus C2H2_tnt.AT4G26030_col_a_m1; m=6/40; ncol2=19; w=-4; offset=-4; strand=D; shift=3; score=   10.6; ---yhmhwwyyyyACCwAmywy--
; cor=0.884; Ncor=0.632; logoDP=7.111; NsEucl=0.947; NSW=0.957; rcor=9; rNcor=17; rlogoDP=12; rNsEucl=7; rNSW=8; rank_mean=10.600; match_rank=6
a	0	0	0	136	204	206	169	223	195	122	63	59	0	591	102	0	324	588	184	56	220	124	0	0
c	0	0	0	223	149	156	171	130	114	182	199	217	400	0	484	591	30	0	401	353	111	206	0	0
g	0	0	0	72	82	104	61	56	98	88	57	34	4	0	0	0	0	0	0	0	40	21	0	0
t	0	0	0	160	156	125	190	182	184	199	272	281	187	0	5	0	237	3	6	182	220	240	0	0
MYB_tnt.MYB13_col_a_m1_rc_shift10 (MYB_tnt.MYB13_col_a_m1_rc) 0.909 0.707 0.401 0.949 0.964 5 5 33 5 5 10.600 7 
; oligos_6-8nt_m1 versus MYB_tnt.MYB13_col_a_m1_rc; m=7/40; ncol2=15; w=0; offset=3; strand=R; shift=10; score=   10.6; ----------yyCACCwACCmhhw
; cor=0.909; Ncor=0.707; logoDP=0.401; NsEucl=0.949; NSW=0.964; rcor=5; rNcor=5; rlogoDP=33; rNsEucl=5; rNSW=5; rank_mean=10.600; match_rank=7
a	0	0	0	0	0	0	0	0	0	0	81	43	2	591	49	0	332	595	119	0	278	172	177	185
c	0	0	0	0	0	0	0	0	0	0	185	261	467	4	546	595	6	0	475	499	157	191	165	139
g	0	0	0	0	0	0	0	0	0	0	69	30	7	0	0	0	0	0	0	0	68	42	66	94
t	0	0	0	0	0	0	0	0	0	0	260	261	119	0	0	0	257	0	1	96	92	190	187	177
MYB_tnt.MYB93_colamp_a_m1_shift5 (MYB_tnt.MYB93_colamp_a_m1) 0.892 0.610 6.968 0.944 0.959 7 20 16 9 7 11.800 8 
; oligos_6-8nt_m1 versus MYB_tnt.MYB93_colamp_a_m1; m=8/40; ncol2=15; w=-2; offset=-2; strand=D; shift=5; score=   11.8; -----rwwwbyyyAMCwAmY----
; cor=0.892; Ncor=0.610; logoDP=6.968; NsEucl=0.944; NSW=0.959; rcor=7; rNcor=20; rlogoDP=16; rNsEucl=9; rNSW=7; rank_mean=11.800; match_rank=8
a	0	0	0	0	0	179	153	224	198	67	50	74	5	579	145	0	187	579	204	1	0	0	0	0
c	0	0	0	0	0	109	130	94	87	156	185	185	388	0	433	579	57	0	375	402	0	0	0	0
g	0	0	0	0	0	163	104	27	142	204	52	37	31	0	1	0	0	0	0	0	0	0	0	0
t	0	0	0	0	0	128	192	234	152	152	292	283	155	0	0	0	335	0	0	176	0	0	0	0
MYB_tnt.ATY19_col_a_m1_shift0 (MYB_tnt.ATY19_col_a_m1) 0.939 0.548 6.682 0.959 0.976 2 33 19 3 2 11.800 9 
; oligos_6-8nt_m1 versus MYB_tnt.ATY19_col_a_m1; m=9/40; ncol2=21; w=-7; offset=-7; strand=D; shift=0; score=   11.8; cwycaahwyhyyCACCWACcm---
; cor=0.939; Ncor=0.548; logoDP=6.682; NsEucl=0.959; NSW=0.976; rcor=2; rNcor=33; rlogoDP=19; rNsEucl=3; rNSW=2; rank_mean=11.800; match_rank=9
a	110	158	101	118	223	207	186	213	124	150	94	44	79	526	40	3	381	500	121	55	205	0	0	0
c	221	128	182	223	107	127	156	102	155	182	175	241	378	5	482	531	0	20	387	350	155	0	0	0
g	80	67	88	61	95	70	41	58	81	43	61	32	1	1	7	0	0	2	16	16	55	0	0	0
t	123	181	163	132	109	130	151	161	174	159	204	217	76	2	5	0	153	12	10	113	119	0	0	0
MYB_tnt.MYB10_colamp_a_m1_shift9 (MYB_tnt.MYB10_colamp_a_m1) 0.846 0.697 8.091 0.935 0.940 17 6 3 17 18 12.200 10 
; oligos_6-8nt_m1 versus MYB_tnt.MYB10_colamp_a_m1; m=10/40; ncol2=14; w=0; offset=2; strand=D; shift=9; score=   12.2; ---------yyyYACCwAmCwww-
; cor=0.846; Ncor=0.697; logoDP=8.091; NsEucl=0.935; NSW=0.940; rcor=17; rNcor=6; rlogoDP=3; rNsEucl=17; rNSW=18; rank_mean=12.200; match_rank=10
a	0	0	0	0	0	0	0	0	0	142	58	44	10	583	5	0	205	585	195	8	267	207	192	0
c	0	0	0	0	0	0	0	0	0	147	183	266	414	0	580	585	2	0	388	482	97	138	125	0
g	0	0	0	0	0	0	0	0	0	94	68	19	11	1	0	0	0	0	2	1	30	33	64	0
t	0	0	0	0	0	0	0	0	0	202	276	256	150	1	0	0	378	0	0	94	191	207	204	0
MYB_tnt.MYB99_col_a_m1_shift9 (MYB_tnt.MYB99_col_a_m1) 0.854 0.653 7.193 0.932 0.940 15 11 10 18 19 14.600 11 
; oligos_6-8nt_m1 versus MYB_tnt.MYB99_col_a_m1; m=11/40; ncol2=13; w=0; offset=2; strand=D; shift=9; score=   14.6; ---------hyyyACCwAmyyh--
; cor=0.854; Ncor=0.653; logoDP=7.193; NsEucl=0.932; NSW=0.940; rcor=15; rNcor=11; rlogoDP=10; rNsEucl=18; rNSW=19; rank_mean=14.600; match_rank=11
a	0	0	0	0	0	0	0	0	0	147	61	79	57	585	50	0	185	585	246	15	128	149	0	0
c	0	0	0	0	0	0	0	0	0	172	250	209	360	0	535	585	9	0	337	355	183	213	0	0
g	0	0	0	0	0	0	0	0	0	92	40	44	7	0	0	0	0	0	0	0	45	48	0	0
t	0	0	0	0	0	0	0	0	0	174	234	253	161	0	0	0	391	0	2	215	229	175	0	0
MYB_tnt.MYB61_col_a_m1_shift10 (MYB_tnt.MYB61_col_a_m1) 0.848 0.659 7.015 0.935 0.942 16 10 15 16 17 14.800 12 
; oligos_6-8nt_m1 versus MYB_tnt.MYB61_col_a_m1; m=12/40; ncol2=15; w=0; offset=3; strand=D; shift=10; score=   14.8; ----------yyyAmCwACCammh
; cor=0.848; Ncor=0.659; logoDP=7.015; NsEucl=0.935; NSW=0.942; rcor=16; rNcor=10; rlogoDP=15; rNsEucl=16; rNSW=17; rank_mean=14.800; match_rank=12
a	0	0	0	0	0	0	0	0	0	0	92	100	0	593	203	0	225	590	117	7	285	151	185	189
c	0	0	0	0	0	0	0	0	0	0	211	247	359	1	392	595	132	0	478	514	56	236	210	153
g	0	0	0	0	0	0	0	0	0	0	49	76	0	0	0	0	0	5	0	0	125	75	54	94
t	0	0	0	0	0	0	0	0	0	0	243	172	236	1	0	0	238	0	0	74	129	133	146	159
MYB_tnt.MYB51_col_a_m1_shift0 (MYB_tnt.MYB51_col_a_m1) 0.862 0.503 7.472 0.940 0.950 13 36 6 11 11 15.400 13 
; oligos_6-8nt_m1 versus MYB_tnt.MYB51_col_a_m1; m=13/40; ncol2=21; w=-7; offset=-7; strand=D; shift=0; score=   15.4; hwhhwwwwhwyyyACCwACyw---
; cor=0.862; Ncor=0.503; logoDP=7.472; NsEucl=0.940; NSW=0.950; rcor=13; rNcor=36; rlogoDP=6; rNsEucl=11; rNSW=11; rank_mean=15.400; match_rank=13
a	148	160	152	145	210	197	189	211	145	158	46	55	58	552	0	0	251	552	113	46	232	0	0	0
c	165	110	157	178	108	99	134	108	147	125	206	213	277	1	553	553	1	0	427	326	50	0	0	0
g	73	59	72	67	65	96	58	82	89	86	53	50	8	0	0	0	2	1	8	11	13	0	0	0
t	167	224	172	163	170	161	172	152	172	184	248	235	210	0	0	0	299	0	5	170	258	0	0	0
MYB_tnt.MYB93_col_a_m1_rc_shift7 (MYB_tnt.MYB93_col_a_m1_rc) 0.833 0.675 0.446 0.944 0.947 19 7 29 8 15 15.600 14 
; oligos_6-8nt_m1 versus MYB_tnt.MYB93_col_a_m1_rc; m=14/40; ncol2=21; w=0; offset=0; strand=R; shift=7; score=   15.6; -------wdkyyyAMCwAmywhhm
; cor=0.833; Ncor=0.675; logoDP=0.446; NsEucl=0.944; NSW=0.947; rcor=19; rNcor=7; rlogoDP=29; rNsEucl=8; rNSW=15; rank_mean=15.600; match_rank=14
a	0	0	0	0	0	0	0	178	171	81	43	73	36	587	159	0	233	594	247	34	210	154	210	227
c	0	0	0	0	0	0	0	113	73	105	157	159	357	0	419	596	54	0	349	360	125	197	177	153
g	0	0	0	0	0	0	0	40	174	246	74	49	48	5	5	0	3	1	0	0	28	25	24	69
t	0	0	0	0	0	0	0	265	178	164	322	315	155	4	13	0	306	1	0	202	233	220	185	147
MYB_tnt.MYB92_colamp_a_m1_shift3 (MYB_tnt.MYB92_colamp_a_m1) 0.842 0.601 7.286 0.938 0.943 18 24 7 15 16 16.000 15 
; oligos_6-8nt_m1 versus MYB_tnt.MYB92_colamp_a_m1; m=15/40; ncol2=19; w=-4; offset=-4; strand=D; shift=3; score=     16; ---waawwdkyyyACCwAmywh--
; cor=0.842; Ncor=0.601; logoDP=7.286; NsEucl=0.938; NSW=0.943; rcor=18; rNcor=24; rlogoDP=7; rNsEucl=15; rNSW=16; rank_mean=16.000; match_rank=15
a	0	0	0	214	231	177	170	243	174	106	54	76	23	591	50	0	220	591	235	5	225	167	0	0
c	0	0	0	142	133	131	105	75	97	137	175	179	344	0	541	591	13	0	356	396	114	154	0	0
g	0	0	0	77	84	138	99	55	157	187	61	49	26	0	0	0	0	0	0	0	36	47	0	0
t	0	0	0	158	143	145	217	218	163	161	301	287	198	0	0	0	358	0	0	190	216	223	0	0
MYB_tnt.MYB83_colamp_a_m1_rc_shift11 (MYB_tnt.MYB83_colamp_a_m1_rc) 0.881 0.603 0.464 0.939 0.951 10 21 27 14 10 16.400 16 
; oligos_6-8nt_m1 versus MYB_tnt.MYB83_colamp_a_m1_rc; m=16/40; ncol2=15; w=0; offset=4; strand=R; shift=11; score=   16.4; -----------yCACCWAmCwyww
; cor=0.881; Ncor=0.603; logoDP=0.464; NsEucl=0.939; NSW=0.951; rcor=10; rNcor=21; rlogoDP=27; rNsEucl=14; rNSW=10; rank_mean=16.400; match_rank=16
a	0	0	0	0	0	0	0	0	0	0	0	99	5	596	146	0	407	589	195	40	232	101	196	225
c	0	0	0	0	0	0	0	0	0	0	0	267	456	0	448	595	19	1	401	470	69	232	137	119
g	0	0	0	0	0	0	0	0	0	0	0	80	5	0	2	0	2	6	0	0	130	88	64	90
t	0	0	0	0	0	0	0	0	0	0	0	150	130	0	0	1	168	0	0	86	165	175	199	162
MYB_tnt.MYB55_colamp_a_m1_rc_shift6 (MYB_tnt.MYB55_colamp_a_m1_rc) 0.856 0.666 0.271 0.939 0.948 14 8 37 13 13 17.000 17 
; oligos_6-8nt_m1 versus MYB_tnt.MYB55_colamp_a_m1_rc; m=17/40; ncol2=15; w=-1; offset=-1; strand=R; shift=6; score=     17; ------hwwhyyyAMCwAMCw---
; cor=0.856; Ncor=0.666; logoDP=0.271; NsEucl=0.939; NSW=0.948; rcor=14; rNcor=8; rlogoDP=37; rNsEucl=13; rNSW=13; rank_mean=17.000; match_rank=17
a	0	0	0	0	0	0	173	197	187	168	81	70	9	597	161	0	279	598	150	0	284	0	0	0
c	0	0	0	0	0	0	173	138	112	178	194	267	334	0	437	598	52	0	446	532	41	0	0	0
g	0	0	0	0	0	0	66	80	136	93	67	105	2	0	0	0	0	0	0	0	122	0	0	0
t	0	0	0	0	0	0	186	183	163	159	256	156	253	1	0	0	267	0	2	66	151	0	0	0
MYB_tnt.MYB10_col_a_m1_rc_shift10 (MYB_tnt.MYB10_col_a_m1_rc) 0.870 0.641 0.340 0.940 0.950 11 14 36 12 12 17.000 18 
; oligos_6-8nt_m1 versus MYB_tnt.MYB10_col_a_m1_rc; m=18/40; ncol2=16; w=0; offset=3; strand=R; shift=10; score=     17; ----------yyYACCWAMChhwh
; cor=0.870; Ncor=0.641; logoDP=0.340; NsEucl=0.940; NSW=0.950; rcor=11; rNcor=14; rlogoDP=36; rNsEucl=12; rNSW=12; rank_mean=17.000; match_rank=18
a	0	0	0	0	0	0	0	0	0	0	62	43	3	583	7	0	174	584	169	14	246	201	212	207
c	0	0	0	0	0	0	0	0	0	0	213	245	404	0	576	585	0	0	409	455	169	215	144	147
g	0	0	0	0	0	0	0	0	0	0	49	37	12	2	2	0	1	0	0	1	19	21	59	71
t	0	0	0	0	0	0	0	0	0	0	261	260	166	0	0	0	410	1	7	115	151	148	170	160
MYB_tnt.MYB61_colamp_a_m1_shift9 (MYB_tnt.MYB61_colamp_a_m1) 0.832 0.636 7.253 0.928 0.932 20 15 8 24 21 17.600 19 
; oligos_6-8nt_m1 versus MYB_tnt.MYB61_colamp_a_m1; m=19/40; ncol2=13; w=0; offset=2; strand=D; shift=9; score=   17.6; ---------yyyyACCwAMCwy--
; cor=0.832; Ncor=0.636; logoDP=7.253; NsEucl=0.928; NSW=0.932; rcor=20; rNcor=15; rlogoDP=8; rNsEucl=24; rNSW=21; rank_mean=17.600; match_rank=19
a	0	0	0	0	0	0	0	0	0	140	101	87	0	592	121	0	253	592	182	0	270	130	0	0
c	0	0	0	0	0	0	0	0	0	186	175	257	313	0	471	592	41	0	409	509	55	193	0	0
g	0	0	0	0	0	0	0	0	0	96	66	97	4	0	0	0	0	0	0	0	109	72	0	0
t	0	0	0	0	0	0	0	0	0	170	250	151	275	0	0	0	298	0	1	83	158	197	0	0
MYB_tnt.MYB83_col_a_m1_rc_shift11 (MYB_tnt.MYB83_col_a_m1_rc) 0.891 0.576 0.596 0.931 0.947 8 30 24 21 14 19.400 20 
; oligos_6-8nt_m1 versus MYB_tnt.MYB83_col_a_m1_rc; m=20/40; ncol2=11; w=0; offset=4; strand=R; shift=11; score=   19.4; -----------yCACCAACmmc--
; cor=0.891; Ncor=0.576; logoDP=0.596; NsEucl=0.931; NSW=0.947; rcor=8; rNcor=30; rlogoDP=24; rNsEucl=21; rNSW=14; rank_mean=19.400; match_rank=20
a	0	0	0	0	0	0	0	0	0	0	0	55	46	423	98	0	359	348	78	123	133	79	0	0
c	0	0	0	0	0	0	0	0	0	0	0	215	343	0	321	420	6	53	339	207	107	236	0	0
g	0	0	0	0	0	0	0	0	0	0	0	41	2	0	4	0	3	22	6	7	81	28	0	0
t	0	0	0	0	0	0	0	0	0	0	0	112	32	0	0	3	55	0	0	86	102	80	0	0
MYB_tnt.MYB40_col_a_m1_shift10 (MYB_tnt.MYB40_col_a_m1) 0.810 0.619 7.631 0.923 0.923 23 18 5 28 25 19.800 21 
; oligos_6-8nt_m1 versus MYB_tnt.MYB40_col_a_m1; m=21/40; ncol2=13; w=0; offset=3; strand=D; shift=10; score=   19.8; ----------yyyACCwAmywty-
; cor=0.810; Ncor=0.619; logoDP=7.631; NsEucl=0.923; NSW=0.923; rcor=23; rNcor=18; rlogoDP=5; rNsEucl=28; rNSW=25; rank_mean=19.800; match_rank=21
a	0	0	0	0	0	0	0	0	0	0	10	4	6	236	2	0	96	236	95	8	88	57	58	0
c	0	0	0	0	0	0	0	0	0	0	83	73	102	0	235	236	0	1	140	137	35	54	62	0
g	0	0	0	0	0	0	0	0	0	0	30	9	0	1	0	1	0	0	0	0	21	15	23	0
t	0	0	0	0	0	0	0	0	0	0	114	151	129	0	0	0	141	0	2	92	93	111	94	0
MYB_tnt.MYB55_col_m1_shift9 (MYB_tnt.MYB55_col_m1) 0.801 0.659 6.558 0.926 0.924 26 9 20 25 23 20.600 22 
; oligos_6-8nt_m1 versus MYB_tnt.MYB55_col_m1; m=22/40; ncol2=14; w=0; offset=2; strand=D; shift=9; score=   20.6; ---------yyycAmCmACCacm-
; cor=0.801; Ncor=0.659; logoDP=6.558; NsEucl=0.926; NSW=0.924; rcor=26; rNcor=9; rlogoDP=20; rNsEucl=25; rNSW=23; rank_mean=20.600; match_rank=22
a	0	0	0	0	0	0	0	0	0	76	40	102	49	398	235	0	139	406	0	6	279	91	114	0
c	0	0	0	0	0	0	0	0	0	178	219	128	265	30	188	429	189	0	428	423	6	192	217	0
g	0	0	0	0	0	0	0	0	0	59	40	56	16	0	2	0	1	21	0	0	77	42	32	0
t	0	0	0	0	0	0	0	0	0	116	130	143	99	1	4	0	100	2	1	0	67	104	66	0
MYB_tnt.MYB17_colamp_a_m1_rc_shift10 (MYB_tnt.MYB17_colamp_a_m1_rc) 0.829 0.645 0.434 0.931 0.934 21 13 30 20 20 20.800 23 
; oligos_6-8nt_m1 versus MYB_tnt.MYB17_colamp_a_m1_rc; m=23/40; ncol2=15; w=0; offset=3; strand=R; shift=10; score=   20.8; ----------yyyACCTACCwwhw
; cor=0.829; Ncor=0.645; logoDP=0.434; NsEucl=0.931; NSW=0.934; rcor=21; rNcor=13; rlogoDP=30; rNsEucl=20; rNSW=20; rank_mean=20.800; match_rank=23
a	0	0	0	0	0	0	0	0	0	0	40	77	58	569	74	0	138	571	73	1	311	240	174	180
c	0	0	0	0	0	0	0	0	0	0	251	210	348	0	497	571	23	0	494	460	67	141	192	130
g	0	0	0	0	0	0	0	0	0	0	44	35	6	0	0	0	0	0	3	0	13	33	55	58
t	0	0	0	0	0	0	0	0	0	0	236	249	159	2	0	0	410	0	1	110	180	157	150	203
MYB_tnt.MYB107_col_a_m1_rc_shift4 (MYB_tnt.MYB107_col_a_m1_rc) 0.802 0.602 0.542 0.932 0.930 25 23 25 19 22 22.800 24 
; oligos_6-8nt_m1 versus MYB_tnt.MYB107_col_a_m1_rc; m=24/40; ncol2=18; w=-3; offset=-3; strand=R; shift=4; score=   22.8; ----arwtwgyycACCwAmyww--
; cor=0.802; Ncor=0.602; logoDP=0.542; NsEucl=0.932; NSW=0.930; rcor=25; rNcor=23; rlogoDP=25; rNsEucl=19; rNSW=22; rank_mean=22.800; match_rank=24
a	0	0	0	0	230	207	168	143	204	59	44	43	28	598	119	0	211	600	250	23	226	197	0	0
c	0	0	0	0	138	75	72	87	63	96	154	153	372	0	468	600	42	0	349	375	89	135	0	0
g	0	0	0	0	104	178	134	18	139	320	118	31	67	2	2	0	5	0	0	0	35	38	0	0
t	0	0	0	0	128	140	226	352	194	125	284	373	133	0	11	0	342	0	1	202	250	230	0	0
ND_tnt.ASHR1_col_a_m1_shift5 (ND_tnt.ASHR1_col_a_m1) 0.783 0.536 7.849 0.920 0.917 28 34 4 33 28 25.400 25 
; oligos_6-8nt_m1 versus ND_tnt.ASHR1_col_a_m1; m=25/40; ncol2=15; w=-2; offset=-2; strand=D; shift=5; score=   25.4; -----tyatcwTCACCAtca----
; cor=0.783; Ncor=0.536; logoDP=7.849; NsEucl=0.920; NSW=0.917; rcor=28; rNcor=34; rlogoDP=4; rNsEucl=33; rNSW=28; rank_mean=25.400; match_rank=25
a	0	0	0	0	0	67	50	93	64	43	112	10	0	270	0	0	270	56	55	111	0	0	0	0
c	0	0	0	0	0	67	91	54	53	134	50	2	270	0	268	270	0	60	97	52	0	0	0	0
g	0	0	0	0	0	32	39	58	49	40	38	0	0	0	0	0	0	38	51	48	0	0	0	0
t	0	0	0	0	0	104	90	65	104	53	70	258	0	0	2	0	0	116	67	59	0	0	0	0
MYB_tnt.MYB49_col_a_m1_shift7 (MYB_tnt.MYB49_col_a_m1) 0.734 0.648 6.702 0.921 0.906 33 12 18 31 34 25.600 26 
; oligos_6-8nt_m1 versus MYB_tnt.MYB49_col_a_m1; m=26/40; ncol2=15; w=0; offset=0; strand=D; shift=7; score=   25.6; -------twkyyyACCWAmyww--
; cor=0.734; Ncor=0.648; logoDP=6.702; NsEucl=0.921; NSW=0.906; rcor=33; rNcor=12; rlogoDP=18; rNsEucl=31; rNSW=34; rank_mean=25.600; match_rank=26
a	0	0	0	0	0	0	0	146	213	72	46	39	23	588	79	0	170	598	292	60	187	190	0	0
c	0	0	0	0	0	0	0	124	71	81	165	152	323	0	510	598	8	0	299	313	31	94	0	0
g	0	0	0	0	0	0	0	18	88	282	98	33	61	9	6	0	3	0	0	3	0	37	0	0
t	0	0	0	0	0	0	0	310	226	163	289	374	191	1	3	0	417	0	7	222	380	277	0	0
MYBrelated_tnt.AT1G18960_col_a_m1_shift3 (MYBrelated_tnt.AT1G18960_col_a_m1) 0.725 0.560 7.142 0.928 0.912 35 32 11 22 31 26.200 27 
; oligos_6-8nt_m1 versus MYBrelated_tnt.AT1G18960_col_a_m1; m=27/40; ncol2=22; w=-4; offset=-4; strand=D; shift=3; score=   26.2; ---yaahawhwwCAmCAACawyah
; cor=0.725; Ncor=0.560; logoDP=7.142; NsEucl=0.928; NSW=0.912; rcor=35; rNcor=32; rlogoDP=11; rNsEucl=22; rNSW=31; rank_mean=26.200; match_rank=27
a	0	0	0	29	85	62	46	73	44	51	76	51	0	164	100	0	164	159	0	90	48	37	74	43
c	0	0	0	58	23	28	67	28	39	60	23	30	171	7	61	167	0	12	170	28	36	51	26	49
g	0	0	0	37	26	40	15	31	31	13	21	29	0	0	10	4	0	0	0	24	24	38	32	31
t	0	0	0	47	37	41	43	39	57	47	51	61	0	0	0	0	7	0	1	29	63	45	39	48
MYB_tnt.MYB99_colamp_a_m1_shift10 (MYB_tnt.MYB99_colamp_a_m1) 0.816 0.528 7.033 0.914 0.918 22 35 14 36 27 26.800 28 
; oligos_6-8nt_m1 versus MYB_tnt.MYB99_colamp_a_m1; m=28/40; ncol2=11; w=0; offset=3; strand=D; shift=10; score=   26.8; ----------yyyACCTAmyt---
; cor=0.816; Ncor=0.528; logoDP=7.033; NsEucl=0.914; NSW=0.918; rcor=22; rNcor=35; rlogoDP=14; rNsEucl=36; rNSW=27; rank_mean=26.800; match_rank=28
a	0	0	0	0	0	0	0	0	0	0	54	83	35	590	66	0	102	590	277	13	123	0	0	0
c	0	0	0	0	0	0	0	0	0	0	225	201	351	0	524	590	8	0	313	349	145	0	0	0
g	0	0	0	0	0	0	0	0	0	0	43	60	16	0	0	0	0	0	0	0	38	0	0	0
t	0	0	0	0	0	0	0	0	0	0	268	246	188	0	0	0	480	0	0	228	284	0	0	0
MYB_tnt.MYB43_col_a_m1_rc_shift9 (MYB_tnt.MYB43_col_a_m1_rc) 0.808 0.618 0.266 0.922 0.922 24 19 38 29 26 27.200 29 
; oligos_6-8nt_m1 versus MYB_tnt.MYB43_col_a_m1_rc; m=29/40; ncol2=13; w=0; offset=2; strand=R; shift=9; score=   27.2; ---------yytyACCwAmywt--
; cor=0.808; Ncor=0.618; logoDP=0.266; NsEucl=0.922; NSW=0.922; rcor=24; rNcor=19; rlogoDP=38; rNsEucl=29; rNSW=26; rank_mean=27.200; match_rank=29
a	0	0	0	0	0	0	0	0	0	11	0	12	2	83	2	0	29	83	33	0	24	20	0	0
c	0	0	0	0	0	0	0	0	0	27	30	18	45	0	81	83	0	0	50	55	13	14	0	0
g	0	0	0	0	0	0	0	0	0	18	7	4	1	0	0	0	0	0	0	1	2	2	0	0
t	0	0	0	0	0	0	0	0	0	27	46	49	35	0	0	0	54	0	0	27	44	47	0	0
MYB_tnt.MYB4_col200_a_m1_rc_shift10 (MYB_tnt.MYB4_col200_a_m1_rc) 0.771 0.600 0.467 0.922 0.915 29 26 26 30 29 28.000 30 
; oligos_6-8nt_m1 versus MYB_tnt.MYB4_col200_a_m1_rc; m=30/40; ncol2=15; w=0; offset=3; strand=R; shift=10; score=     28; ----------yyyACCwAmywwww
; cor=0.771; Ncor=0.600; logoDP=0.467; NsEucl=0.922; NSW=0.915; rcor=29; rNcor=26; rlogoDP=26; rNsEucl=30; rNSW=29; rank_mean=28.000; match_rank=30
a	0	0	0	0	0	0	0	0	0	0	101	64	27	572	21	0	296	570	283	106	187	196	199	205
c	0	0	0	0	0	0	0	0	0	0	169	204	237	0	551	572	0	0	259	270	83	111	85	60
g	0	0	0	0	0	0	0	0	0	0	85	52	16	0	0	0	2	2	10	10	33	60	92	90
t	0	0	0	0	0	0	0	0	0	0	217	252	292	0	0	0	274	0	20	186	269	205	196	217
MYB_tnt.MYB96_colamp_a_m1_shift6 (MYB_tnt.MYB96_colamp_a_m1) 0.716 0.580 4.266 0.928 0.912 37 29 21 23 33 28.600 31 
; oligos_6-8nt_m1 versus MYB_tnt.MYB96_colamp_a_m1; m=31/40; ncol2=21; w=-1; offset=-1; strand=D; shift=6; score=   28.6; ------hhmamyymcCAACyAccw
; cor=0.716; Ncor=0.580; logoDP=4.266; NsEucl=0.928; NSW=0.912; rcor=37; rNcor=29; rlogoDP=21; rNsEucl=23; rNSW=33; rank_mean=28.600; match_rank=31
a	0	0	0	0	0	0	164	187	193	304	180	61	106	235	57	4	586	485	0	54	473	144	76	197
c	0	0	0	0	0	0	177	178	207	110	247	238	193	228	398	520	0	101	582	290	1	316	378	56
g	0	0	0	0	0	0	67	71	54	57	34	66	45	35	26	1	0	0	4	12	53	12	1	25
t	0	0	0	0	0	0	178	150	132	115	125	221	242	88	105	61	0	0	0	230	59	114	131	308
MYB_tnt.MYB74_colamp_a_m1_rc_shift9 (MYB_tnt.MYB74_colamp_a_m1_rc) 0.768 0.633 0.369 0.921 0.912 30 16 35 32 32 29.000 32 
; oligos_6-8nt_m1 versus MYB_tnt.MYB74_colamp_a_m1_rc; m=32/40; ncol2=14; w=0; offset=2; strand=R; shift=9; score=     29; ---------tyyyACCTAmYwww-
; cor=0.768; Ncor=0.633; logoDP=0.369; NsEucl=0.921; NSW=0.912; rcor=30; rNcor=16; rlogoDP=35; rNsEucl=32; rNSW=32; rank_mean=29.000; match_rank=32
a	0	0	0	0	0	0	0	0	0	116	40	72	11	586	42	0	99	586	263	3	217	190	161	0
c	0	0	0	0	0	0	0	0	0	128	177	187	333	0	542	586	0	0	323	420	54	135	136	0
g	0	0	0	0	0	0	0	0	0	129	55	46	17	0	1	0	0	0	0	0	6	39	68	0
t	0	0	0	0	0	0	0	0	0	213	314	281	225	0	1	0	487	0	0	163	309	222	221	0
MYB_tnt.MYB41_col_a_m1_shift6 (MYB_tnt.MYB41_col_a_m1) 0.722 0.562 7.037 0.915 0.898 36 31 13 35 36 30.200 33 
; oligos_6-8nt_m1 versus MYB_tnt.MYB41_col_a_m1; m=33/40; ncol2=15; w=-1; offset=-1; strand=D; shift=6; score=   30.2; ------dtwgttyACCTAmyt---
; cor=0.722; Ncor=0.562; logoDP=7.037; NsEucl=0.915; NSW=0.898; rcor=36; rNcor=31; rlogoDP=13; rNsEucl=35; rNSW=36; rank_mean=30.200; match_rank=33
a	0	0	0	0	0	0	46	37	57	19	12	14	19	184	10	0	17	184	114	18	40	0	0	0
c	0	0	0	0	0	0	20	34	17	26	44	33	84	0	174	184	3	0	68	99	25	0	0	0
g	0	0	0	0	0	0	46	16	39	96	37	13	20	0	0	0	0	0	0	4	2	0	0	0
t	0	0	0	0	0	0	72	97	71	43	91	124	61	0	0	0	164	0	2	63	117	0	0	0
MYB_tnt.MYB74_col_m1_shift9 (MYB_tnt.MYB74_col_m1) 0.705 0.581 7.223 0.911 0.888 40 28 9 38 38 30.600 34 
; oligos_6-8nt_m1 versus MYB_tnt.MYB74_col_m1; m=34/40; ncol2=14; w=0; offset=2; strand=D; shift=9; score=   30.6; ---------yyyyACCTAmywwh-
; cor=0.705; Ncor=0.581; logoDP=7.223; NsEucl=0.911; NSW=0.888; rcor=40; rNcor=28; rlogoDP=9; rNsEucl=38; rNSW=38; rank_mean=30.600; match_rank=34
a	0	0	0	0	0	0	0	0	0	12	6	28	12	130	0	0	2	130	65	12	43	56	42	0
c	0	0	0	0	0	0	0	0	0	38	53	35	54	0	128	130	0	0	65	80	19	27	35	0
g	0	0	0	0	0	0	0	0	0	27	13	13	6	0	0	0	0	0	0	4	8	4	11	0
t	0	0	0	0	0	0	0	0	0	53	58	54	58	0	2	0	128	0	0	34	60	43	42	0
MYB_tnt.MYB39_colamp_a_m1_rc_shift9 (MYB_tnt.MYB39_colamp_a_m1_rc) 0.755 0.492 0.463 0.925 0.915 32 37 28 27 30 30.800 35 
; oligos_6-8nt_m1 versus MYB_tnt.MYB39_colamp_a_m1_rc; m=35/40; ncol2=21; w=0; offset=2; strand=R; shift=9; score=   30.8; ---------kyyyACCWAmywwyw
; cor=0.755; Ncor=0.492; logoDP=0.463; NsEucl=0.925; NSW=0.915; rcor=32; rNcor=37; rlogoDP=28; rNsEucl=27; rNSW=30; rank_mean=30.800; match_rank=35
a	0	0	0	0	0	0	0	0	0	133	72	66	56	567	76	0	164	567	304	44	148	161	138	166
c	0	0	0	0	0	0	0	0	0	100	176	174	319	0	483	567	5	0	260	294	64	107	156	136
g	0	0	0	0	0	0	0	0	0	143	54	40	20	0	1	0	3	0	2	0	7	35	46	66
t	0	0	0	0	0	0	0	0	0	191	265	287	172	0	7	0	395	0	1	229	348	264	227	199
MYB_tnt.MYB67_col_a_m1_rc_shift10 (MYB_tnt.MYB67_col_a_m1_rc) 0.796 0.464 0.164 0.926 0.923 27 39 40 26 24 31.200 36 
; oligos_6-8nt_m1 versus MYB_tnt.MYB67_col_a_m1_rc; m=36/40; ncol2=21; w=0; offset=3; strand=R; shift=10; score=   31.2; ----------ycyACCwAmCayhw
; cor=0.796; Ncor=0.464; logoDP=0.164; NsEucl=0.926; NSW=0.923; rcor=27; rNcor=39; rlogoDP=40; rNsEucl=26; rNSW=24; rank_mean=31.200; match_rank=36
a	0	0	0	0	0	0	0	0	0	0	60	49	4	599	55	0	194	599	358	7	267	133	152	217
c	0	0	0	0	0	0	0	0	0	0	226	288	329	0	542	599	25	0	240	532	70	203	165	136
g	0	0	0	0	0	0	0	0	0	0	71	119	0	0	0	0	0	0	0	0	147	48	61	85
t	0	0	0	0	0	0	0	0	0	0	242	143	266	0	2	0	380	0	1	60	115	215	221	161
MYB_tnt.MYB49_colamp_a_m1_rc_shift9 (MYB_tnt.MYB49_colamp_a_m1_rc) 0.729 0.601 0.415 0.915 0.898 34 25 32 34 35 32.000 37 
; oligos_6-8nt_m1 versus MYB_tnt.MYB49_colamp_a_m1_rc; m=37/40; ncol2=14; w=0; offset=2; strand=R; shift=9; score=     32; ---------kytyACCTAmywwt-
; cor=0.729; Ncor=0.601; logoDP=0.415; NsEucl=0.915; NSW=0.898; rcor=34; rNcor=25; rlogoDP=32; rNsEucl=34; rNSW=35; rank_mean=32.000; match_rank=37
a	0	0	0	0	0	0	0	0	0	100	50	62	16	587	57	0	139	588	325	68	179	195	142	0
c	0	0	0	0	0	0	0	0	0	96	156	140	328	0	528	588	0	0	252	310	42	92	99	0
g	0	0	0	0	0	0	0	0	0	167	76	36	34	0	2	0	1	0	0	5	5	29	78	0
t	0	0	0	0	0	0	0	0	0	225	306	350	210	1	1	0	448	0	11	205	362	272	269	0
MYB_tnt.MYB39_col_a_m1_rc_shift9 (MYB_tnt.MYB39_col_a_m1_rc) 0.713 0.587 0.400 0.912 0.891 38 27 34 37 37 34.600 38 
; oligos_6-8nt_m1 versus MYB_tnt.MYB39_col_a_m1_rc; m=38/40; ncol2=14; w=0; offset=2; strand=R; shift=9; score=   34.6; ---------tyyyACCTAmywtw-
; cor=0.713; Ncor=0.587; logoDP=0.400; NsEucl=0.912; NSW=0.891; rcor=38; rNcor=27; rlogoDP=34; rNsEucl=37; rNSW=37; rank_mean=34.600; match_rank=38
a	0	0	0	0	0	0	0	0	0	92	29	39	20	581	81	0	99	585	324	27	148	131	148	0
c	0	0	0	0	0	0	0	0	0	99	181	206	392	0	501	585	0	0	257	275	46	121	128	0
g	0	0	0	0	0	0	0	0	0	115	55	43	10	4	0	0	0	0	0	0	0	32	54	0
t	0	0	0	0	0	0	0	0	0	279	320	297	163	0	3	0	486	0	4	283	391	301	255	0
MYB_tnt.MYB92_100ng20cy_b_m1_rc_shift10 (MYB_tnt.MYB92_100ng20cy_b_m1_rc) 0.760 0.447 1.766 0.893 0.886 31 40 23 40 40 34.800 39 
; oligos_6-8nt_m1 versus MYB_tnt.MYB92_100ng20cy_b_m1_rc; m=39/40; ncol2=10; w=0; offset=3; strand=R; shift=10; score=   34.8; ----------yyyACCTAMc----
; cor=0.760; Ncor=0.447; logoDP=1.766; NsEucl=0.893; NSW=0.886; rcor=31; rNcor=40; rlogoDP=23; rNsEucl=40; rNSW=40; rank_mean=34.800; match_rank=39
a	0	0	0	0	0	0	0	0	0	0	37	39	27	181	0	0	22	187	131	17	0	0	0	0
c	0	0	0	0	0	0	0	0	0	0	49	57	71	6	187	187	0	0	56	120	0	0	0	0
g	0	0	0	0	0	0	0	0	0	0	28	22	13	0	0	0	0	0	0	12	0	0	0	0
t	0	0	0	0	0	0	0	0	0	0	73	69	76	0	0	0	165	0	0	38	0	0	0	0
MYB_tnt.MYB30_col_a_m1_shift11 (MYB_tnt.MYB30_col_a_m1) 0.709 0.485 4.111 0.907 0.887 39 38 22 39 39 35.400 40 
; oligos_6-8nt_m1 versus MYB_tnt.MYB30_col_a_m1; m=40/40; ncol2=15; w=0; offset=4; strand=D; shift=11; score=   35.4; -----------yymcCAACyACCa
; cor=0.709; Ncor=0.485; logoDP=4.111; NsEucl=0.907; NSW=0.887; rcor=39; rNcor=38; rlogoDP=22; rNsEucl=39; rNSW=39; rank_mean=35.400; match_rank=40
a	0	0	0	0	0	0	0	0	0	0	0	91	84	155	107	7	584	523	0	37	454	99	51	366
c	0	0	0	0	0	0	0	0	0	0	0	182	212	261	319	501	9	61	594	312	7	442	405	47
g	0	0	0	0	0	0	0	0	0	0	0	116	50	40	40	0	0	2	0	13	103	0	0	34
t	0	0	0	0	0	0	0	0	0	0	0	205	248	138	128	86	1	8	0	232	30	53	138	147