; dna-pattern  -v 1 -pl $RSAT/public_html/tmp/www-data/2026/07/22/dna-pattern_2026-07-22.124435_MGtVAY.pat -i $RSAT/public_html/tmp/www-data/2026/07/22/retrieve-seq_2026-07-22.124359_FmUl4a.fasta.fasta -format fasta -return sites -origin -0 -N 4 -return limits -noov -2str -subst 0
; Citation: van Helden et al. (2000). Yeast 16(2), 177-187.
; Input file           	$RSAT/public_html/tmp/www-data/2026/07/22/retrieve-seq_2026-07-22.124359_FmUl4a.fasta.fasta
; Input format         	fasta
; Pattern file         	$RSAT/public_html/tmp/www-data/2026/07/22/dna-pattern_2026-07-22.124435_MGtVAY.pat
; Search method        	regexp
; Threshold            	0
; Allowed substitutions	0
; Return fields
;                     	sites
;                     	limits
; Patterns
; 	seq	id	score
; 	CTA(A/T)4TAg	CTA(A/T)4TAg	1
; 
; Matching positions
; PatID	Strand	Pattern	SeqID	Start	End	matching_seq	Score
START_END	DR	-	CWP1	-1001	-1	-	0.00
START_END	DR	-	GFA1	-765	-1	-	0.00
START_END	DR	-	YPL088W	-815	-1	-	0.00
START_END	DR	-	FLC2	-877	-1	-	0.00
START_END	DR	-	PAU15	-1001	-1	-	0.00
START_END	DR	-	PRM5	-1001	-1	-	0.00
START_END	DR	-	SED1	-1001	-1	-	0.00
START_END	DR	-	AFR1	-778	-1	-	0.00
START_END	DR	-	CRG1	-724	-1	-	0.00
START_END	DR	-	ASK10	-1001	-1	-	0.00
START_END	DR	-	PCM1	-628	-1	-	0.00
START_END	DR	-	RCR1	-239	-1	-	0.00
START_END	DR	-	CHS3	-1001	-1	-	0.00
START_END	DR	-	YPR078C	-605	-1	-	0.00
START_END	DR	-	CMK2	-958	-1	-	0.00
START_END	DR	-	YPS6	-1001	-1	-	0.00
START_END	DR	-	Q0255	-1	-1	-	0.00
START_END	DR	-	COS4	-1001	-1	-	0.00
START_END	DR	-	DIA1	-431	-1	-	0.00
START_END	DR	-	SLT2	-455	-1	-	0.00
START_END	DR	-	MTL1	-760	-1	-	0.00
START_END	DR	-	PLB1	-1001	-1	-	0.00
START_END	DR	-	GSC2	-795	-1	-	0.00
START_END	DR	-	DFG5	-430	-1	-	0.00
START_END	DR	-	CCW14	-320	-1	-	0.00
START_END	DR	-	PTP2	-468	-1	-	0.00
START_END	DR	-	SRL3	-459	-1	-	0.00
START_END	DR	-	YPS1	-524	-1	-	0.00
START_END	DR	-	GYL1	-341	-1	-	0.00
START_END	DR	-	SMF1	-607	-1	-	0.00
START_END	DR	-	PRB1	-447	-1	-	0.00
START_END	DR	-	CIT1	-785	-1	-	0.00
START_END	DR	-	MSB3	-380	-1	-	0.00
START_END	DR	-	RCN2	-319	-1	-	0.00
START_END	DR	-	COS111	-859	-1	-	0.00
START_END	DR	-	SUR1	-373	-1	-	0.00
START_END	DR	-	YIL108W	-722	-1	-	0.00
START_END	DR	-	NTH1	-570	-1	-	0.00
START_END	DR	-	PRM10	-1	-1	-	0.00
START_END	DR	-	SSK22	-380	-1	-	0.00
START_END	DR	-	CRH1	-518	-1	-	0.00
START_END	DR	-	RLM1	-815	-1	-	0.00
START_END	DR	-	KTR2	-335	-1	-	0.00
START_END	DR	-	TMA10	-967	-1	-	0.00
START_END	DR	-	YJL132W	-351	-1	-	0.00
START_END	DR	-	PCA1	-1001	-1	-	0.00
START_END	DR	-	SPO11	-304	-1	-	0.00
START_END	DR	-	MSG5	-359	-1	-	0.00
START_END	DR	-	YPS5	-1001	-1	-	0.00
START_END	DR	-	RIM21	-380	-1	-	0.00
START_END	DR	-	YIL029C	-1001	-1	-	0.00
START_END	DR	-	GDE1	-525	-1	-	0.00
START_END	DR	-	YJL107C	-1001	-1	-	0.00
START_END	DR	-	YPS3	-1001	-1	-	0.00
START_END	DR	-	YNL208W	-518	-1	-	0.00
START_END	DR	-	FBP26	-458	-1	-	0.00
START_END	DR	-	FMP33	-1001	-1	-	0.00
START_END	DR	-	CHS1	-458	-1	-	0.00
START_END	DR	-	YMR122W-A	-967	-1	-	0.00
START_END	DR	-	YPL067C	-386	-1	-	0.00
START_END	DR	-	YNL058C	-536	-1	-	0.00
START_END	DR	-	YKE4	-739	-1	-	0.00
START_END	DR	-	YNR065C	-25	-1	-	0.00
START_END	DR	-	YNR066C	-711	-1	-	0.00
START_END	DR	-	YPK2	-444	-1	-	0.00
START_END	DR	-	MCH5	-1001	-1	-	0.00
START_END	DR	-	YLR042C	-1001	-1	-	0.00
START_END	DR	-	ATP22	-492	-1	-	0.00
START_END	DR	-	YMR315W	-387	-1	-	0.00
START_END	DR	-	FLC1	-815	-1	-	0.00
START_END	DR	-	HAL1	-598	-1	-	0.00
START_END	DR	-	BAG7	-938	-1	-	0.00
START_END	DR	-	PIR3	-1001	-1	-	0.00
START_END	DR	-	ATG8	-313	-1	-	0.00
START_END	DR	-	HSP150	-1001	-1	-	0.00
START_END	DR	-	PST1	-1001	-1	-	0.00
; Host name	rsat
; Job started	2026-07-22.124436
; Job done	2026-07-22.124436
; Seconds	0.11
;	user	0.11
;	system	0.02
;	cuser	0
;	csystem	0