; dna-pattern  -v 1 -pl $RSAT/public_html/tmp/www-data/2026/07/22/dna-pattern_2026-07-22.150532_xfT5tK.pat -i $RSAT/public_html/tmp/www-data/2026/07/22/tmp_sequence_2026-07-22.150532_Yx8aHl.fasta -format fasta -return sites -N 4 -return limits -noov -2str -subst 0
; Citation: van Helden et al. (2000). Yeast 16(2), 177-187.
; Input file           	$RSAT/public_html/tmp/www-data/2026/07/22/tmp_sequence_2026-07-22.150532_Yx8aHl.fasta
; Input format         	fasta
; Pattern file         	$RSAT/public_html/tmp/www-data/2026/07/22/dna-pattern_2026-07-22.150532_xfT5tK.pat
; Search method        	regexp
; Threshold            	0
; Allowed substitutions	0
; Return fields
;                     	limits
;                     	sites
; Patterns
; 	seq	id	score
; 	AAMAATCT	NBS	1
; 	WRATATCT	EE	1
; 
; Matching positions
; PatID	Strand	Pattern	SeqID	Start	End	matching_seq	Score
START_END	DR	-	Os01g0504500	1	3002	-	0.00
NBS	D	AAMAATCT	Os01g0504500	1577	1584	aaatAAAAATCTtttg	1.00
NBS	R	AAMAATCT	Os01g0504500	1759	1766	catgAAAAATCTatta	1.00
EE	D	WRATATCT	Os01g0504500	1794	1801	agttTAATATCTttta	1.00
EE	R	WRATATCT	Os01g0504500	1749	1756	ctatTAATATCTtttt	1.00
; Host name	rsat
; Job started	2026-07-22.150532
; Job done	2026-07-22.150532
; Seconds	0.07
;	user	0.07
;	system	0.01
;	cuser	0
;	csystem	0