; matrix-scan -v 1 -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/07/22/matrix-scan_2026-07-22.120656_Q979zm.matrix -pseudo 1 -decimals 1 -2str -origin end -bginput -markov 1 -bg_pseudo 0.01 -return limits -return sites -return pval -return rank -lth score 1 -uth pval 1e-4 -i $RSAT/public_html/tmp/www-data/2026/07/22/tmp_sequence_2026-07-22.120656_zhgEES.fasta -seq_format fasta -n score ; Slow counting mode ; Input files ; input $RSAT/public_html/tmp/www-data/2026/07/22/tmp_sequence_2026-07-22.120656_zhgEES.fasta ; Matrix files ; matrix 1 $RSAT/public_html/tmp/www-data/2026/07/22/matrix-scan_2026-07-22.120656_Q979zm.matrix ; Sequence format fasta ; Pseudo counts 1 ; Background model ; Method input ; Markov order 1 ; Strand undef ; Background pseudo-frequency 0.01 ; Residue probabilities ; a 0.33253 ; c 0.18421 ; g 0.15709 ; t 0.32617 ; Thresholds lower upper ; pval NA 0.0001 ; score 1 NA ; Output columns ; 1 seq_id ; 2 ft_type ; 3 ft_name ; 4 strand ; 5 start ; 6 end ; 7 sequence ; 8 weight #seq_id ft_type ft_name strand start end sequence weight Pval ln_Pval sig rank rank_pm BVRB_9g215540|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_9g215540 limit START_END D -1701 -1 . 0 0 0 0 T459_35378|Capsicum_annuum.ASM51225v2.60|T459_35378 limit START_END D -1701 -1 . 0 0 0 0 T459_35378|Capsicum_annuum.ASM51225v2.60|T459_35378 site oligos_6-8nt_m1oligos_6-8nt_m1 D -289 -274 GAAACACCAAACCCCT 8.8 1.8e-05 -10.940 4.751 1 1 T459_35378|Capsicum_annuum.ASM51225v2.60|T459_35378 site oligos_6-8nt_m1oligos_6-8nt_m1 D -410 -395 TTTCCGCCAACCTACC 7.1 6.7e-05 -9.610 4.174 2 2 T459_32000|Capsicum_annuum.ASM51225v2.60|T459_32000 limit START_END D -1701 -1 . 0 0 0 0 AUR62013165.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62013165.v1.0 limit START_END D -1701 -1 . 0 0 0 0 AUR62013165.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62013165.v1.0 site oligos_6-8nt_m1oligos_6-8nt_m1 R -633 -618 TGCCCACCAACCCTCT 10.9 2.5e-06 -12.898 5.602 1 1 AUR62013165.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62013165.v1.0 site oligos_6-8nt_m1oligos_6-8nt_m1 D -356 -341 TCTCCACCAAATCCTC 8.2 2.9e-05 -10.447 4.537 2 2 Cla97C08G147910|Citrullus_lanatus.Cla97_v1.62|Cla97C08G147910 limit START_END D -450 -1 . 0 0 0 0 Cla97C10G192540|Citrullus_lanatus.Cla97_v1.62|Cla97C10G192540 limit START_END D -1701 -1 . 0 0 0 0 MELO3C024826.2|Cucumis_melo.Melonv4.60|MELO3C024826.2 limit START_END D -1701 -1 . 0 0 0 0 MELO3C024827.2|Cucumis_melo.Melonv4.60|MELO3C024827.2 limit START_END D -1701 -1 . 0 0 0 0 Csa_4G111580|Cucumis_sativus.ASM407v2.60|Csa_4G111580 limit START_END D -1701 -1 . 0 0 0 0 Csa_4G111590|Cucumis_sativus.ASM407v2.60|Csa_4G111590 limit START_END D -1701 -1 . 0 0 0 0 Csa_6G029440|Cucumis_sativus.ASM407v2.60|Csa_6G029440 limit START_END D -1701 -1 . 0 0 0 0 Csa_6G029440|Cucumis_sativus.ASM407v2.60|Csa_6G029440 site oligos_6-8nt_m1oligos_6-8nt_m1 D -113 -98 CGACCACCAACCGGCT 7.8 4.0e-05 -10.131 4.400 1 1 Csa_6G029440|Cucumis_sativus.ASM407v2.60|Csa_6G029440 site oligos_6-8nt_m1oligos_6-8nt_m1 R -340 -325 TCTACACCNNNNNNNN 6.5 1.0e-04 -9.169 3.982 2 2 HanXRQr2_Chr10g0444301|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr10g0444301 limit START_END D -1701 -1 . 0 0 0 0 HanXRQr2_Chr16g0751271|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr16g0751271 limit START_END D -1701 -1 . 0 0 0 0 gene-LSAT_5X108740|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_5X108740 limit START_END D -1701 -1 . 0 0 0 0 gene-LSAT_9X115140|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_9X115140 limit START_END D -1701 -1 . 0 0 0 0 gene7299|Medicago_truncatula.MtrunA17r50ANR.60|gene7299 limit START_END D -1701 -1 . 0 0 0 0 107780053|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107780053 limit START_END D -1701 -1 . 0 0 0 0 107789601|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107789601 limit START_END D -1701 -1 . 0 0 0 0 107789601|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107789601 site oligos_6-8nt_m1oligos_6-8nt_m1 D -1571 -1556 CAGTCGCCAACCCACA 8.1 3.1e-05 -10.367 4.502 1 1 gene-LOC110802506|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110802506 limit START_END D -1701 -1 . 0 0 0 0 BVRB_4g085970|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g085970 limit START_END D -1701 -1 . 0 0 0 0 BVRB_4g085970|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g085970 site oligos_6-8nt_m1oligos_6-8nt_m1 R -609 -594 TGTTCACCNNNNNNNN 6.8 8.4e-05 -9.384 4.075 1 1 BVRB_9g206550|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_9g206550 limit START_END D -1701 -1 . 0 0 0 0 T459_20146|Capsicum_annuum.ASM51225v2.60|T459_20146 limit START_END D -1701 -1 . 0 0 0 0 T459_20146|Capsicum_annuum.ASM51225v2.60|T459_20146 site oligos_6-8nt_m1oligos_6-8nt_m1 D -1227 -1212 CATTCATCTACCACCT 7.9 3.7e-05 -10.217 4.437 1 1 T459_20168|Capsicum_annuum.ASM51225v2.60|T459_20168 limit START_END D -1701 -1 . 0 0 0 0 AUR62002952.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62002952.v1.0 limit START_END D -1701 -1 . 0 0 0 0 AUR62002952.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62002952.v1.0 site oligos_6-8nt_m1oligos_6-8nt_m1 D -250 -235 ACCCCACCAAACCCTT 10.4 4.1e-06 -12.407 5.388 1 1 AUR62007757.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62007757.v1.0 limit START_END D -1701 -1 . 0 0 0 0 Cla97C02G043390|Citrullus_lanatus.Cla97_v1.62|Cla97C02G043390 limit START_END D -1701 -1 . 0 0 0 0 Csa_6G128550|Cucumis_sativus.ASM407v2.60|Csa_6G128550 limit START_END D -319 -1 . 0 0 0 0 HanXRQr2_Chr06g0245991|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr06g0245991 limit START_END D -1701 -1 . 0 0 0 0 HanXRQr2_Chr06g0247881|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr06g0247881 limit START_END D -1701 -1 . 0 0 0 0 gene-LSAT_3X37280|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_3X37280 limit START_END D -1701 -1 . 0 0 0 0 gene-LSAT_3X37280|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_3X37280 site oligos_6-8nt_m1oligos_6-8nt_m1 D -20 -5 ATTTCATCAACCTCGA 6.9 7.8e-05 -9.464 4.110 1 1 gene-LSAT_4X70021|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_4X70021 limit START_END D -1701 -1 . 0 0 0 0 gene-LSAT_4X70021|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_4X70021 site oligos_6-8nt_m1oligos_6-8nt_m1 D -27 -12 TCATCTTCAACCCCCA 6.8 8.4e-05 -9.384 4.075 1 1 gene22259|Medicago_truncatula.MtrunA17r50ANR.60|gene22259 limit START_END D -201 -1 . 0 0 0 0 gene3683|Medicago_truncatula.MtrunA17r50ANR.60|gene3683 limit START_END D -1701 -1 . 0 0 0 0 107796682|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796682 limit START_END D -1701 -1 . 0 0 0 0 107825203|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107825203 limit START_END D -1701 -1 . 0 0 0 0 107825203|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107825203 site oligos_6-8nt_m1oligos_6-8nt_m1 R -1058 -1043 TTTTCAACAACCCCCA 10.0 6.0e-06 -12.024 5.222 1 1 gene-LOC110799892|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110799892 limit START_END D -1701 -1 . 0 0 0 0 BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400 limit START_END D -455 -1 . 0 0 0 0 BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340 limit START_END D -1701 -1 . 0 0 0 0 T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445 limit START_END D -1701 -1 . 0 0 0 0 T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204 limit START_END D -1701 -1 . 0 0 0 0 AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0 limit START_END D -1701 -1 . 0 0 0 0 Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070 limit START_END D -1701 -1 . 0 0 0 0 Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070 site oligos_6-8nt_m1oligos_6-8nt_m1 D -809 -794 GCCCCACCAAACACTA 9.7 8.0e-06 -11.735 5.096 1 1 MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2 limit START_END D -1701 -1 . 0 0 0 0 Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300 limit START_END D -1701 -1 . 0 0 0 0 Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300 site oligos_6-8nt_m1oligos_6-8nt_m1 R -351 -336 TCTTCTCCAAACNNNN 7.8 4.0e-05 -10.131 4.400 1 1 HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171 limit START_END D -1701 -1 . 0 0 0 0 HanXRQr2_Chr13g0574181|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574181 limit START_END D -1701 -1 . 0 0 0 0 HanXRQr2_Chr13g0574181|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574181 site oligos_6-8nt_m1oligos_6-8nt_m1 D -105 -90 GCATCATCAACCCTTC 7.1 6.7e-05 -9.610 4.174 1 1 gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320 limit START_END D -1701 -1 . 0 0 0 0 gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542 limit START_END D -1701 -1 . 0 0 0 0 gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542 site oligos_6-8nt_m1oligos_6-8nt_m1 R -751 -736 GGTACACCAACCCTTT 9.9 6.6e-06 -11.932 5.182 1 1 107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937 limit START_END D -1701 -1 . 0 0 0 0 107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142 limit START_END D -1701 -1 . 0 0 0 0 107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142 site oligos_6-8nt_m1oligos_6-8nt_m1 D -834 -819 CCCTCCCCAAACCCTA 7.5 5.0e-05 -9.901 4.300 1 1 107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142 site oligos_6-8nt_m1oligos_6-8nt_m1 D -843 -828 TACACACCACCCTCCC 7.3 5.8e-05 -9.758 4.238 2 2 107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548 limit START_END D -1701 -1 . 0 0 0 0 107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499 limit START_END D -1701 -1 . 0 0 0 0 gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951 limit START_END D -1701 -1 . 0 0 0 0 AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1 limit START_END D -1701 -1 . 0 0 0 0 AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1 site oligos_6-8nt_m1oligos_6-8nt_m1 D -1664 -1649 TCTCCACCAACCATGC 9.7 8.0e-06 -11.735 5.096 1 1 AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1 site oligos_6-8nt_m1oligos_6-8nt_m1 R -1295 -1280 CATTCAACAACCACAT 7.7 4.3e-05 -10.053 4.366 2 2 AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1 site oligos_6-8nt_m1oligos_6-8nt_m1 D -1499 -1484 AACTCACCAACCAGTT 7.6 4.6e-05 -9.984 4.336 3 3 GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D limit START_END D -1648 -1 . 0 0 0 0 GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D site oligos_6-8nt_m1oligos_6-8nt_m1 D -1073 -1058 TCTCCACCTACCAAAT 8.5 2.3e-05 -10.700 4.647 1 1 GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D site oligos_6-8nt_m1oligos_6-8nt_m1 D -1306 -1291 GACTCACGAACCCTAC 6.5 1.0e-04 -9.169 3.982 2 2 GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D limit START_END D -1701 -1 . 0 0 0 0 GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D site oligos_6-8nt_m1oligos_6-8nt_m1 D -1081 -1066 TCTCCACCTACCAAAT 8.5 2.3e-05 -10.700 4.647 1 1 GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D site oligos_6-8nt_m1oligos_6-8nt_m1 D -1282 -1267 GACTCACGAACCCTAC 6.5 1.0e-04 -9.169 3.982 2 2 GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D limit START_END D -1701 -1 . 0 0 0 0 GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D site oligos_6-8nt_m1oligos_6-8nt_m1 D -800 -785 AACTCACCAACCAAGC 9.0 1.5e-05 -11.117 4.828 1 1 GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D site oligos_6-8nt_m1oligos_6-8nt_m1 D -1419 -1404 TCTCCACCTACCAAGT 8.4 2.4e-05 -10.618 4.611 2 2 GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D limit START_END D -1659 -1 . 0 0 0 0 GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D site oligos_6-8nt_m1oligos_6-8nt_m1 D -1163 -1148 TCTCCACCTACCAAGT 8.4 2.4e-05 -10.618 4.611 1 1 A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA limit START_END D -1626 -1 . 0 0 0 0 GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400 limit START_END D -1701 -1 . 0 0 0 0 gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931 limit START_END D -1701 -1 . 0 0 0 0 gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931 site oligos_6-8nt_m1oligos_6-8nt_m1 D -1032 -1017 GGCTCACCAACCTAAG 9.1 1.4e-05 -11.193 4.861 1 1 gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931 site oligos_6-8nt_m1oligos_6-8nt_m1 R -354 -339 AACTCACCAACTCAAA 6.8 8.4e-05 -9.384 4.075 2 2 Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915 limit START_END D -973 -1 . 0 0 0 0 Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915 site oligos_6-8nt_m1oligos_6-8nt_m1 D -505 -490 CGATCACCTACCCCTA 11.7 1.0e-06 -13.793 5.990 1 1 Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915 site oligos_6-8nt_m1oligos_6-8nt_m1 R -646 -631 GGTCCACCAACTCTTT 6.7 9.0e-05 -9.311 4.044 2 2 PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000 limit START_END D -433 -1 . 0 0 0 0 PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000 site oligos_6-8nt_m1oligos_6-8nt_m1 D -249 -234 CGATCACCTACCCCTA 11.7 1.0e-06 -13.793 5.990 1 1 PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000 site oligos_6-8nt_m1oligos_6-8nt_m1 R -391 -376 GGTCCACCAACTCTTT 6.7 9.0e-05 -9.311 4.044 2 2 Solyc11g072100.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc11g072100.ITAG4.0 limit START_END D -1701 -1 . 0 0 0 0 AT3G12900|Arabidopsis_thaliana.TAIR10.60|AT3G12900 limit START_END D -1701 -1 . 0 0 0 0 AT3G12900|Arabidopsis_thaliana.TAIR10.60|AT3G12900 site oligos_6-8nt_m1oligos_6-8nt_m1 R -416 -401 CATTTACCAACCCCCC 12.1 6.5e-07 -14.241 6.185 1 1 GSBRNA2T00000146001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g26300D limit START_END D -1701 -1 . 0 0 0 0 GSBRNA2T00020767001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g73310D limit START_END D -1701 -1 . 0 0 0 0 GSBRNA2T00020767001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g73310D site oligos_6-8nt_m1oligos_6-8nt_m1 D -94 -79 TTTTGTCCAACCACCC 7.7 4.3e-05 -10.053 4.366 1 1 GSBRNA2T00020768001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g73320D limit START_END D -1701 -1 . 0 0 0 0 GSBRNA2T00020768001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g73320D site oligos_6-8nt_m1oligos_6-8nt_m1 D -94 -79 TTTTGTCCAACCACCC 7.7 4.3e-05 -10.053 4.366 1 1 GSBRNA2T00026360001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC01g38190D limit START_END D -1701 -1 . 0 0 0 0 A01p052810.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A01p052810.1_BraROA limit START_END D -1701 -1 . 0 0 0 0 A01p052810.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A01p052810.1_BraROA site oligos_6-8nt_m1oligos_6-8nt_m1 D -94 -79 TTTTGTCCAACCGCTC 6.6 9.6e-05 -9.246 4.016 1 1 A03p039990.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p039990.1_BraROA limit START_END D -1701 -1 . 0 0 0 0 A03p039990.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p039990.1_BraROA site oligos_6-8nt_m1oligos_6-8nt_m1 D -94 -79 TTTTGTCCAACCACCC 7.7 4.3e-05 -10.053 4.366 1 1 A05p046620.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A05p046620.1_BraROA limit START_END D -1701 -1 . 0 0 0 0 GLYMA_08G169100|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G169100 limit START_END D -1701 -1 . 0 0 0 0 GLYMA_08G169100|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G169100 site oligos_6-8nt_m1oligos_6-8nt_m1 D -522 -507 AAATCACCTACCGCTG 8.0 3.4e-05 -10.287 4.468 1 1 gene-Lalb_Chr20g0108651|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr20g0108651 limit START_END D -1701 -1 . 0 0 0 0 gene-Lalb_Chr01g0015881|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr01g0015881 limit START_END D -1701 -1 . 0 0 0 0 gene-Lalb_Chr01g0015881|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr01g0015881 site oligos_6-8nt_m1oligos_6-8nt_m1 D -1015 -1000 CGTACACCACCTACCT 6.6 9.6e-05 -9.246 4.016 1 1 Prudul26B035414|Prunus_dulcis.ALMONDv2.60|Prudul26B035414 limit START_END D -1701 -1 . 0 0 0 0 PRUPE_4G138300|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_4G138300 limit START_END D -1701 -1 . 0 0 0 0 PRUPE_4G138300|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_4G138300 site oligos_6-8nt_m1oligos_6-8nt_m1 R -823 -808 ACCCCACCCACCACTC 6.7 9.0e-05 -9.311 4.044 1 1 AT4G31940|Arabidopsis_thaliana.TAIR10.60|CYP82C4 limit START_END D -1269 -1 . 0 0 0 0 AT4G31940|Arabidopsis_thaliana.TAIR10.60|CYP82C4 site oligos_6-8nt_m1oligos_6-8nt_m1 D -190 -175 AAATCACCAAACACAC 7.8 4.0e-05 -10.131 4.400 1 1 AT4G31940|Arabidopsis_thaliana.TAIR10.60|CYP82C4 site oligos_6-8nt_m1oligos_6-8nt_m1 R -294 -279 CATACACCTACCGATT 7.2 6.3e-05 -9.676 4.202 2 2 GSBRNA2T00011262001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g67210D limit START_END D -1701 -1 . 0 0 0 0 GSBRNA2T00011262001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g67210D site oligos_6-8nt_m1oligos_6-8nt_m1 D -239 -224 AACCCACCAAACACAT 7.4 5.4e-05 -9.833 4.270 1 1 GSBRNA2T00021899001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA08g12300D limit START_END D -1701 -1 . 0 0 0 0 GSBRNA2T00021899001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA08g12300D site oligos_6-8nt_m1oligos_6-8nt_m1 D -537 -522 TCATTACCAACCCCAC 10.5 3.7e-06 -12.501 5.429 1 1 GSBRNA2T00021899001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA08g12300D site oligos_6-8nt_m1oligos_6-8nt_m1 D -239 -224 AACCCACCAAACACAT 7.4 5.4e-05 -9.833 4.270 2 2 A08p025520.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A08p025520.1_BraROA limit START_END D -1701 -1 . 0 0 0 0 A08p025520.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A08p025520.1_BraROA site oligos_6-8nt_m1oligos_6-8nt_m1 D -448 -433 TCATTACCAACCCACT 9.5 9.5e-06 -11.559 5.020 1 1 A08p025520.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A08p025520.1_BraROA site oligos_6-8nt_m1oligos_6-8nt_m1 D -182 -167 AACCCACCAAACACAT 7.4 5.4e-05 -9.833 4.270 2 2 GLYMA_04G035600|Glycine_max.Glycine_max_v2.1.60|GLYMA_04G035600 limit START_END D -1701 -1 . 0 0 0 0 gene-Lalb_Chr23g0266791|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr23g0266791 limit START_END D -1701 -1 . 0 0 0 0 gene-Lalb_Chr23g0266791|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr23g0266791 site oligos_6-8nt_m1oligos_6-8nt_m1 R -659 -644 CTATTACCAACCACTT 8.2 2.9e-05 -10.447 4.537 1 1 Prudul26B028905|Prunus_dulcis.ALMONDv2.60|Prudul26B028905 limit START_END D -1032 -1 . 0 0 0 0 Prudul26B028905|Prunus_dulcis.ALMONDv2.60|Prudul26B028905 site oligos_6-8nt_m1oligos_6-8nt_m1 D -380 -365 CTTCCACCAACCACCN 12.2 5.8e-07 -14.358 6.235 1 1 PRUPE_1G387700|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_1G387700 limit START_END D -998 -1 . 0 0 0 0 PRUPE_1G387700|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_1G387700 site oligos_6-8nt_m1oligos_6-8nt_m1 D -376 -361 CTTCCACCAACCACCN 12.2 5.8e-07 -14.358 6.235 1 1 gene:Solyc12g088970.1.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|gene:Solyc12g088970.1.ITAG4.0 limit START_END D -1464 -1 . 0 0 0 0 gene:Solyc12g088970.1.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|gene:Solyc12g088970.1.ITAG4.0 site oligos_6-8nt_m1oligos_6-8nt_m1 R -1392 -1377 CCTCCACCAACCTCCC 13.1 1.8e-07 -15.554 6.755 1 1 gene:Solyc12g088970.1.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|gene:Solyc12g088970.1.ITAG4.0 site oligos_6-8nt_m1oligos_6-8nt_m1 R -1434 -1419 AGCCCACCAAACCAAA 7.3 5.8e-05 -9.758 4.238 2 2 gene:Solyc12g088970.1.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|gene:Solyc12g088970.1.ITAG4.0 site oligos_6-8nt_m1oligos_6-8nt_m1 R -1369 -1354 GTTACCCCTACCCCCC 7.2 6.3e-05 -9.676 4.202 3 3 AT1G28680|Arabidopsis_thaliana.TAIR10.60|AT1G28680 limit START_END D -201 -1 . 0 0 0 0 AT1G28680|Arabidopsis_thaliana.TAIR10.60|AT1G28680 site oligos_6-8nt_m1oligos_6-8nt_m1 D -127 -112 TTCTCACCAACCACTC 11.9 8.1e-07 -14.029 6.093 1 1 GSBRNA2T00056005001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA09g27140D limit START_END D -1701 -1 . 0 0 0 0 GSBRNA2T00056005001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA09g27140D site oligos_6-8nt_m1oligos_6-8nt_m1 D -157 -142 TTCTCACCAACCTTCC 10.0 6.0e-06 -12.024 5.222 1 1 GSBRNA2T00046289001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g22050D limit START_END D -1701 -1 . 0 0 0 0 GSBRNA2T00046289001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g22050D site oligos_6-8nt_m1oligos_6-8nt_m1 D -240 -225 TACACACCAAACCAAA 6.8 8.4e-05 -9.384 4.075 1 1 A09p048520.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A09p048520.1_BraROA limit START_END D -1701 -1 . 0 0 0 0 A09p048520.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A09p048520.1_BraROA site oligos_6-8nt_m1oligos_6-8nt_m1 D -157 -142 TTCTCACCAACCTTCC 10.0 6.0e-06 -12.024 5.222 1 1 GLYMA_13G232400|Glycine_max.Glycine_max_v2.1.60|GLYMA_13G232400 limit START_END D -1701 -1 . 0 0 0 0 GLYMA_13G232400|Glycine_max.Glycine_max_v2.1.60|GLYMA_13G232400 site oligos_6-8nt_m1oligos_6-8nt_m1 R -154 -139 AGCTCACCAAACACAG 9.3 1.1e-05 -11.377 4.941 1 1 GLYMA_13G232400|Glycine_max.Glycine_max_v2.1.60|GLYMA_13G232400 site oligos_6-8nt_m1oligos_6-8nt_m1 R -22 -7 CTCACACCAAACCCAG 9.2 1.3e-05 -11.279 4.899 2 2 GLYMA_13G232400|Glycine_max.Glycine_max_v2.1.60|GLYMA_13G232400 site oligos_6-8nt_m1oligos_6-8nt_m1 R -184 -169 ACACCACCTACCCTAC 8.8 1.8e-05 -10.940 4.751 3 3 gene-Lalb_Chr20g0121341|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr20g0121341 limit START_END D -1640 -1 . 0 0 0 0 gene-Lalb_Chr20g0121341|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr20g0121341 site oligos_6-8nt_m1oligos_6-8nt_m1 R -197 -182 ATCTCACCAAACCCAT 10.6 3.4e-06 -12.586 5.466 1 1 Prudul26B009025|Prunus_dulcis.ALMONDv2.60|Prudul26B009025 limit START_END D -1323 -1 . 0 0 0 0 Prudul26B009025|Prunus_dulcis.ALMONDv2.60|Prudul26B009025 site oligos_6-8nt_m1oligos_6-8nt_m1 D -28 -13 ACAACACCAACCCATC 9.2 1.3e-05 -11.279 4.899 1 1 Prudul26B009025|Prunus_dulcis.ALMONDv2.60|Prudul26B009025 site oligos_6-8nt_m1oligos_6-8nt_m1 R -395 -380 TTCCCAACAACCCCCG 8.6 2.1e-05 -10.773 4.679 2 2 PRUPE_4G057600|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_4G057600 limit START_END D -545 -1 . 0 0 0 0 PRUPE_4G057600|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_4G057600 site oligos_6-8nt_m1oligos_6-8nt_m1 R -394 -379 TTCCCAACAACCCCCG 8.6 2.1e-05 -10.773 4.679 1 1 Solyc04g079720.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc04g079720.ITAG4.0 limit START_END D -1701 -1 . 0 0 0 0 Solyc04g079720.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc04g079720.ITAG4.0 site oligos_6-8nt_m1oligos_6-8nt_m1 D -216 -201 TGACCACCTACCTACC 7.2 6.3e-05 -9.676 4.202 1 1 Solyc04g079720.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc04g079720.ITAG4.0 site oligos_6-8nt_m1oligos_6-8nt_m1 R -473 -458 GTTTCATCTACCTCTC 6.6 9.6e-05 -9.246 4.016 2 2 ; ; Matrices ; matrix name ncol nrow pseudo Wmin Wmax Wrange ; 1 oligos_6-8nt_m1oligos_6-8nt_m1 16 4 1 -40.100 17.400 57.500 a:0.333 c:0.184 g:0.157 t:0.326 ; Number of sequences scanned 95 ; Sum of sequence lengths 148914 ; N residues 34519 ; Matches per matrix ; matrix name matches scored ; 1 oligos_6-8nt_m1oligos_6-8nt_m1 69 294978 ; TOTAL 69 294978 ; Host name rsat ; Job started 2026-07-22.120657 ; Job done 2026-07-22.120725 ; Seconds 27.93 ; user 27.94 ; system 0.01 ; cuser 0.09 ; csystem 0.03