; matrix-scan -v 1 -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/07/22/matrix-scan_2026-07-22.120403_6KY8xa.matrix -pseudo 1 -decimals 1 -2str -origin end -bginput -markov 1 -bg_pseudo 0.01 -return limits -return sites -return pval -return rank -lth score 1 -uth pval 1e-4 -i $RSAT/public_html/tmp/www-data/2026/07/22/tmp_sequence_2026-07-22.120403_nnPzJ6.fasta -seq_format fasta -n score ; Slow counting mode ; Input files ; input $RSAT/public_html/tmp/www-data/2026/07/22/tmp_sequence_2026-07-22.120403_nnPzJ6.fasta ; Matrix files ; matrix 1 $RSAT/public_html/tmp/www-data/2026/07/22/matrix-scan_2026-07-22.120403_6KY8xa.matrix ; Sequence format fasta ; Pseudo counts 1 ; Background model ; Method input ; Markov order 1 ; Strand undef ; Background pseudo-frequency 0.01 ; Residue probabilities ; a 0.33253 ; c 0.18421 ; g 0.15709 ; t 0.32617 ; Thresholds lower upper ; pval NA 0.0001 ; score 1 NA ; Output columns ; 1 seq_id ; 2 ft_type ; 3 ft_name ; 4 strand ; 5 start ; 6 end ; 7 sequence ; 8 weight #seq_id ft_type ft_name strand start end sequence weight Pval ln_Pval sig rank rank_pm BVRB_9g215540|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_9g215540 limit START_END D -1701 -1 . 0 0 0 0 T459_35378|Capsicum_annuum.ASM51225v2.60|T459_35378 limit START_END D -1701 -1 . 0 0 0 0 T459_35378|Capsicum_annuum.ASM51225v2.60|T459_35378 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -286 -273 ACACCAAACCCCTC 7.9 5.8e-05 -9.756 4.237 1 1 T459_32000|Capsicum_annuum.ASM51225v2.60|T459_32000 limit START_END D -1701 -1 . 0 0 0 0 AUR62013165.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62013165.v1.0 limit START_END D -1701 -1 . 0 0 0 0 AUR62013165.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62013165.v1.0 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 R -634 -621 CCACCAACCCTCTC 10.2 4.7e-06 -12.270 5.329 1 1 Cla97C08G147910|Citrullus_lanatus.Cla97_v1.62|Cla97C08G147910 limit START_END D -450 -1 . 0 0 0 0 Cla97C08G147910|Citrullus_lanatus.Cla97_v1.62|Cla97C08G147910 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 R -23 -10 CCACCACCCAAGAA 8.4 3.6e-05 -10.226 4.441 1 1 Cla97C10G192540|Citrullus_lanatus.Cla97_v1.62|Cla97C10G192540 limit START_END D -1701 -1 . 0 0 0 0 MELO3C024826.2|Cucumis_melo.Melonv4.60|MELO3C024826.2 limit START_END D -1701 -1 . 0 0 0 0 MELO3C024827.2|Cucumis_melo.Melonv4.60|MELO3C024827.2 limit START_END D -1701 -1 . 0 0 0 0 Csa_4G111580|Cucumis_sativus.ASM407v2.60|Csa_4G111580 limit START_END D -1701 -1 . 0 0 0 0 Csa_4G111580|Cucumis_sativus.ASM407v2.60|Csa_4G111580 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -832 -819 TTACCACCCATGCC 8.7 2.7e-05 -10.510 4.564 1 1 Csa_4G111590|Cucumis_sativus.ASM407v2.60|Csa_4G111590 limit START_END D -1701 -1 . 0 0 0 0 Csa_6G029440|Cucumis_sativus.ASM407v2.60|Csa_6G029440 limit START_END D -1701 -1 . 0 0 0 0 Csa_6G029440|Cucumis_sativus.ASM407v2.60|Csa_6G029440 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -120 -107 TCACCTCCGACCAC 7.8 6.4e-05 -9.655 4.193 1 1 Csa_6G029440|Cucumis_sativus.ASM407v2.60|Csa_6G029440 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -1215 -1202 TCACCAACACTTAT 7.4 9.0e-05 -9.316 4.046 2 2 HanXRQr2_Chr10g0444301|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr10g0444301 limit START_END D -1701 -1 . 0 0 0 0 HanXRQr2_Chr16g0751271|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr16g0751271 limit START_END D -1701 -1 . 0 0 0 0 gene-LSAT_5X108740|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_5X108740 limit START_END D -1701 -1 . 0 0 0 0 gene-LSAT_9X115140|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_9X115140 limit START_END D -1701 -1 . 0 0 0 0 gene7299|Medicago_truncatula.MtrunA17r50ANR.60|gene7299 limit START_END D -1701 -1 . 0 0 0 0 107780053|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107780053 limit START_END D -1701 -1 . 0 0 0 0 107789601|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107789601 limit START_END D -1701 -1 . 0 0 0 0 gene-LOC110802506|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110802506 limit START_END D -1701 -1 . 0 0 0 0 BVRB_4g085970|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g085970 limit START_END D -1701 -1 . 0 0 0 0 BVRB_9g206550|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_9g206550 limit START_END D -1701 -1 . 0 0 0 0 T459_20146|Capsicum_annuum.ASM51225v2.60|T459_20146 limit START_END D -1701 -1 . 0 0 0 0 T459_20146|Capsicum_annuum.ASM51225v2.60|T459_20146 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -105 -92 CTACCCACCCCCTC 7.5 8.3e-05 -9.392 4.079 1 1 T459_20168|Capsicum_annuum.ASM51225v2.60|T459_20168 limit START_END D -1701 -1 . 0 0 0 0 AUR62002952.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62002952.v1.0 limit START_END D -1701 -1 . 0 0 0 0 AUR62007757.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62007757.v1.0 limit START_END D -1701 -1 . 0 0 0 0 Cla97C02G043390|Citrullus_lanatus.Cla97_v1.62|Cla97C02G043390 limit START_END D -1701 -1 . 0 0 0 0 Cla97C02G043390|Citrullus_lanatus.Cla97_v1.62|Cla97C02G043390 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -44 -31 TCACCTCCACCCAC 7.8 6.4e-05 -9.655 4.193 1 1 Csa_6G128550|Cucumis_sativus.ASM407v2.60|Csa_6G128550 limit START_END D -319 -1 . 0 0 0 0 HanXRQr2_Chr06g0245991|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr06g0245991 limit START_END D -1701 -1 . 0 0 0 0 HanXRQr2_Chr06g0247881|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr06g0247881 limit START_END D -1701 -1 . 0 0 0 0 gene-LSAT_3X37280|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_3X37280 limit START_END D -1701 -1 . 0 0 0 0 gene-LSAT_4X70021|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_4X70021 limit START_END D -1701 -1 . 0 0 0 0 gene22259|Medicago_truncatula.MtrunA17r50ANR.60|gene22259 limit START_END D -201 -1 . 0 0 0 0 gene3683|Medicago_truncatula.MtrunA17r50ANR.60|gene3683 limit START_END D -1701 -1 . 0 0 0 0 gene3683|Medicago_truncatula.MtrunA17r50ANR.60|gene3683 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -1039 -1026 CCACCAACAGCACC 8.6 3.0e-05 -10.410 4.521 1 1 107796682|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796682 limit START_END D -1701 -1 . 0 0 0 0 107825203|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107825203 limit START_END D -1701 -1 . 0 0 0 0 gene-LOC110799892|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110799892 limit START_END D -1701 -1 . 0 0 0 0 BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400 limit START_END D -455 -1 . 0 0 0 0 BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340 limit START_END D -1701 -1 . 0 0 0 0 T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445 limit START_END D -1701 -1 . 0 0 0 0 T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204 limit START_END D -1701 -1 . 0 0 0 0 AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0 limit START_END D -1701 -1 . 0 0 0 0 Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070 limit START_END D -1701 -1 . 0 0 0 0 Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -26 -13 CCACCAACGATCAC 8.3 4.0e-05 -10.124 4.397 1 1 Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -806 -793 CCACCAAACACTAA 8.2 4.5e-05 -10.016 4.350 2 2 MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2 limit START_END D -1701 -1 . 0 0 0 0 Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300 limit START_END D -1701 -1 . 0 0 0 0 Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -1699 -1686 NNNCCTACCCACAC 8.1 4.9e-05 -9.925 4.310 1 1 HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171 limit START_END D -1701 -1 . 0 0 0 0 HanXRQr2_Chr13g0574181|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574181 limit START_END D -1701 -1 . 0 0 0 0 HanXRQr2_Chr13g0574181|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574181 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -54 -41 TTACCATCCACAAC 8.3 4.0e-05 -10.124 4.397 1 1 gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320 limit START_END D -1701 -1 . 0 0 0 0 gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542 limit START_END D -1701 -1 . 0 0 0 0 gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 R -752 -739 ACACCAACCCTTTA 7.6 7.6e-05 -9.487 4.120 1 1 107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937 limit START_END D -1701 -1 . 0 0 0 0 107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142 limit START_END D -1701 -1 . 0 0 0 0 107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -840 -827 ACACCACCCTCCCC 8.3 4.0e-05 -10.124 4.397 1 1 107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548 limit START_END D -1701 -1 . 0 0 0 0 107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499 limit START_END D -1701 -1 . 0 0 0 0 gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951 limit START_END D -1701 -1 . 0 0 0 0 AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1 limit START_END D -1701 -1 . 0 0 0 0 AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -1661 -1648 CCACCAACCATGCC 11.0 1.3e-06 -13.532 5.877 1 1 AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -1472 -1459 TAACCTACCAAATC 8.7 2.7e-05 -10.510 4.564 2 2 AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -1496 -1483 TCACCAACCAGTTC 8.3 4.0e-05 -10.124 4.397 3 3 GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D limit START_END D -1648 -1 . 0 0 0 0 GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -1070 -1057 CCACCTACCAAATG 8.5 3.3e-05 -10.324 4.484 1 1 GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D limit START_END D -1701 -1 . 0 0 0 0 GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -1078 -1065 CCACCTACCAAATG 8.5 3.3e-05 -10.324 4.484 1 1 GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D limit START_END D -1701 -1 . 0 0 0 0 GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -797 -784 TCACCAACCAAGCC 11.3 7.9e-07 -14.046 6.100 1 1 GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -1416 -1403 CCACCTACCAAGTG 8.8 2.5e-05 -10.616 4.611 2 2 GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D limit START_END D -1659 -1 . 0 0 0 0 GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -807 -794 TCACCACCCAAACC 9.4 1.2e-05 -11.292 4.904 1 1 GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -1160 -1147 CCACCTACCAAGTG 8.8 2.5e-05 -10.616 4.611 2 2 A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA limit START_END D -1626 -1 . 0 0 0 0 GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400 limit START_END D -1701 -1 . 0 0 0 0 GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 R -1102 -1089 TTACCTACCAAGCA 9.2 1.6e-05 -11.033 4.792 1 1 gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931 limit START_END D -1701 -1 . 0 0 0 0 gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -142 -129 GCACCTACCACAAT 9.1 1.8e-05 -10.926 4.745 1 1 gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -1029 -1016 TCACCAACCTAAGT 8.0 5.4e-05 -9.833 4.270 2 2 Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915 limit START_END D -973 -1 . 0 0 0 0 Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -502 -489 TCACCTACCCCTAA 10.2 4.7e-06 -12.270 5.329 1 1 PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000 limit START_END D -433 -1 . 0 0 0 0 PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -246 -233 TCACCTACCCCTAA 10.2 4.7e-06 -12.270 5.329 1 1 Solyc11g072100.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc11g072100.ITAG4.0 limit START_END D -1701 -1 . 0 0 0 0 AT3G12900|Arabidopsis_thaliana.TAIR10.60|AT3G12900 limit START_END D -1701 -1 . 0 0 0 0 AT3G12900|Arabidopsis_thaliana.TAIR10.60|AT3G12900 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 R -417 -404 TTACCAACCCCCCT 10.5 2.9e-06 -12.740 5.533 1 1 GSBRNA2T00000146001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g26300D limit START_END D -1701 -1 . 0 0 0 0 GSBRNA2T00020767001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g73310D limit START_END D -1701 -1 . 0 0 0 0 GSBRNA2T00020768001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g73320D limit START_END D -1701 -1 . 0 0 0 0 GSBRNA2T00026360001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC01g38190D limit START_END D -1701 -1 . 0 0 0 0 A01p052810.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A01p052810.1_BraROA limit START_END D -1701 -1 . 0 0 0 0 A03p039990.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p039990.1_BraROA limit START_END D -1701 -1 . 0 0 0 0 A05p046620.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A05p046620.1_BraROA limit START_END D -1701 -1 . 0 0 0 0 GLYMA_08G169100|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G169100 limit START_END D -1701 -1 . 0 0 0 0 GLYMA_08G169100|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G169100 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -519 -506 TCACCTACCGCTGT 9.7 9.0e-06 -11.622 5.047 1 1 GLYMA_08G169100|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G169100 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -257 -244 ATACCTACCACACG 9.4 1.2e-05 -11.292 4.904 2 2 gene-Lalb_Chr20g0108651|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr20g0108651 limit START_END D -1701 -1 . 0 0 0 0 gene-Lalb_Chr01g0015881|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr01g0015881 limit START_END D -1701 -1 . 0 0 0 0 gene-Lalb_Chr01g0015881|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr01g0015881 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -1009 -996 CCACCTACCTAGGA 7.4 9.0e-05 -9.316 4.046 1 1 Prudul26B035414|Prunus_dulcis.ALMONDv2.60|Prudul26B035414 limit START_END D -1701 -1 . 0 0 0 0 Prudul26B035414|Prunus_dulcis.ALMONDv2.60|Prudul26B035414 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -232 -219 CCACCAAAAACCAC 7.5 8.3e-05 -9.392 4.079 1 1 PRUPE_4G138300|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_4G138300 limit START_END D -1701 -1 . 0 0 0 0 PRUPE_4G138300|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_4G138300 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 R -824 -811 CCACCCACCACTCT 8.4 3.6e-05 -10.226 4.441 1 1 AT4G31940|Arabidopsis_thaliana.TAIR10.60|CYP82C4 limit START_END D -1269 -1 . 0 0 0 0 AT4G31940|Arabidopsis_thaliana.TAIR10.60|CYP82C4 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -187 -174 TCACCAAACACACA 8.8 2.5e-05 -10.616 4.611 1 1 GSBRNA2T00011262001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g67210D limit START_END D -1701 -1 . 0 0 0 0 GSBRNA2T00011262001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g67210D site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -236 -223 CCACCAAACACATC 9.0 2.0e-05 -10.839 4.707 1 1 GSBRNA2T00021899001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA08g12300D limit START_END D -1701 -1 . 0 0 0 0 GSBRNA2T00021899001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA08g12300D site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -534 -521 TTACCAACCCCACT 10.1 5.3e-06 -12.151 5.277 1 1 GSBRNA2T00021899001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA08g12300D site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -236 -223 CCACCAAACACATC 9.0 2.0e-05 -10.839 4.707 2 2 A08p025520.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A08p025520.1_BraROA limit START_END D -1701 -1 . 0 0 0 0 A08p025520.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A08p025520.1_BraROA site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -179 -166 CCACCAAACACATC 9.0 2.0e-05 -10.839 4.707 1 1 A08p025520.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A08p025520.1_BraROA site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -445 -432 TTACCAACCCACTG 7.7 7.0e-05 -9.566 4.155 2 2 GLYMA_04G035600|Glycine_max.Glycine_max_v2.1.60|GLYMA_04G035600 limit START_END D -1701 -1 . 0 0 0 0 gene-Lalb_Chr23g0266791|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr23g0266791 limit START_END D -1701 -1 . 0 0 0 0 gene-Lalb_Chr23g0266791|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr23g0266791 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 R -660 -647 TTACCAACCACTTT 9.9 6.8e-06 -11.901 5.169 1 1 Prudul26B028905|Prunus_dulcis.ALMONDv2.60|Prudul26B028905 limit START_END D -1032 -1 . 0 0 0 0 Prudul26B028905|Prunus_dulcis.ALMONDv2.60|Prudul26B028905 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -377 -364 CCACCAACCACCNN 11.9 2.4e-07 -15.241 6.619 1 1 PRUPE_1G387700|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_1G387700 limit START_END D -998 -1 . 0 0 0 0 PRUPE_1G387700|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_1G387700 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -373 -360 CCACCAACCACCNN 11.9 2.4e-07 -15.241 6.619 1 1 PRUPE_1G387700|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_1G387700 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -667 -654 GCACCAACAACACC 7.6 7.6e-05 -9.487 4.120 2 2 gene:Solyc12g088970.1.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|gene:Solyc12g088970.1.ITAG4.0 limit START_END D -1464 -1 . 0 0 0 0 gene:Solyc12g088970.1.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|gene:Solyc12g088970.1.ITAG4.0 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 R -1393 -1380 CCACCAACCTCCCT 10.1 5.3e-06 -12.151 5.277 1 1 AT1G28680|Arabidopsis_thaliana.TAIR10.60|AT1G28680 limit START_END D -201 -1 . 0 0 0 0 AT1G28680|Arabidopsis_thaliana.TAIR10.60|AT1G28680 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -124 -111 TCACCAACCACTCT 11.7 3.6e-07 -14.845 6.447 1 1 GSBRNA2T00056005001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA09g27140D limit START_END D -1701 -1 . 0 0 0 0 GSBRNA2T00056005001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA09g27140D site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 R -408 -395 TCACCTACAACGTT 9.8 7.9e-06 -11.749 5.103 1 1 GSBRNA2T00056005001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA09g27140D site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -154 -141 TCACCAACCTTCCT 9.1 1.8e-05 -10.926 4.745 2 2 GSBRNA2T00056005001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA09g27140D site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -136 -123 CGACCAAACACTAC 8.1 4.9e-05 -9.925 4.310 3 3 GSBRNA2T00046289001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g22050D limit START_END D -1701 -1 . 0 0 0 0 GSBRNA2T00046289001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g22050D site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 R -403 -390 TCACCTACAACGTT 9.8 7.9e-06 -11.749 5.103 1 1 GSBRNA2T00046289001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g22050D site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -136 -123 CGACCAAACACTAC 8.1 4.9e-05 -9.925 4.310 2 2 A09p048520.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A09p048520.1_BraROA limit START_END D -1701 -1 . 0 0 0 0 A09p048520.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A09p048520.1_BraROA site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 R -408 -395 TCACCTACAACGTT 9.8 7.9e-06 -11.749 5.103 1 1 A09p048520.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A09p048520.1_BraROA site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -154 -141 TCACCAACCTTCCT 9.1 1.8e-05 -10.926 4.745 2 2 A09p048520.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A09p048520.1_BraROA site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -136 -123 CGACCAAACACTAC 8.1 4.9e-05 -9.925 4.310 3 3 GLYMA_13G232400|Glycine_max.Glycine_max_v2.1.60|GLYMA_13G232400 limit START_END D -1701 -1 . 0 0 0 0 GLYMA_13G232400|Glycine_max.Glycine_max_v2.1.60|GLYMA_13G232400 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 R -185 -172 CCACCTACCCTACA 9.2 1.6e-05 -11.033 4.792 1 1 GLYMA_13G232400|Glycine_max.Glycine_max_v2.1.60|GLYMA_13G232400 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 R -155 -142 TCACCAAACACAGT 8.5 3.3e-05 -10.324 4.484 2 2 gene-Lalb_Chr20g0121341|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr20g0121341 limit START_END D -1640 -1 . 0 0 0 0 gene-Lalb_Chr20g0121341|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr20g0121341 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 R -198 -185 TCACCAAACCCATA 7.6 7.6e-05 -9.487 4.120 1 1 Prudul26B009025|Prunus_dulcis.ALMONDv2.60|Prudul26B009025 limit START_END D -1323 -1 . 0 0 0 0 Prudul26B009025|Prunus_dulcis.ALMONDv2.60|Prudul26B009025 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -25 -12 ACACCAACCCATCC 8.7 2.7e-05 -10.510 4.564 1 1 Prudul26B009025|Prunus_dulcis.ALMONDv2.60|Prudul26B009025 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -37 -24 GCGCCTACCACAAC 7.5 8.3e-05 -9.392 4.079 2 2 PRUPE_4G057600|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_4G057600 limit START_END D -545 -1 . 0 0 0 0 PRUPE_4G057600|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_4G057600 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -38 -25 GCGCCTACCACAAC 7.5 8.3e-05 -9.392 4.079 1 1 Solyc04g079720.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc04g079720.ITAG4.0 limit START_END D -1701 -1 . 0 0 0 0 Solyc04g079720.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc04g079720.ITAG4.0 site dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 D -213 -200 CCACCTACCTACCG 8.3 4.0e-05 -10.124 4.397 1 1 ; ; Matrices ; matrix name ncol nrow pseudo Wmin Wmax Wrange ; 1 dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 14 4 1 -36.300 13.700 50.000 a:0.333 c:0.184 g:0.157 t:0.326 ; Number of sequences scanned 95 ; Sum of sequence lengths 148914 ; N residues 34519 ; Matches per matrix ; matrix name matches scored ; 1 dyads_test_vs_ctrl_m5dyads_test_vs_ctrl_m5 62 295358 ; TOTAL 62 295358 ; Host name rsat ; Job started 2026-07-22.120403 ; Job done 2026-07-22.120429 ; Seconds 25.33 ; user 25.33 ; system 0.01 ; cuser 0.11 ; csystem 0.02