; matrix-scan  -v 1 -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/07/22/matrix-scan_2026-07-22.120656_Q979zm.matrix -pseudo 1 -decimals 1 -2str -origin end -bginput -markov 1 -bg_pseudo 0.01 -return limits -return sites -return pval -return rank -lth score 1 -uth pval 1e-4 -i $RSAT/public_html/tmp/www-data/2026/07/22/tmp_sequence_2026-07-22.120656_zhgEES.fasta -seq_format fasta -n score
; Slow counting mode            
; Input files
;	input	$RSAT/public_html/tmp/www-data/2026/07/22/tmp_sequence_2026-07-22.120656_zhgEES.fasta
; Matrix files
;	matrix 1	$RSAT/public_html/tmp/www-data/2026/07/22/matrix-scan_2026-07-22.120656_Q979zm.matrix
; Sequence format      	fasta
; Pseudo counts        	1
; Background model
;	Method        	input
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.33253
;		c	0.18421
;		g	0.15709
;		t	0.32617
; Thresholds	lower	upper
;	pval  	NA	0.0001
;	score 	1    	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight	Pval	ln_Pval	sig	rank	rank_pm
BVRB_9g215540|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_9g215540	limit	START_END	D	-1701	-1	.	0	0	0	0
T459_35378|Capsicum_annuum.ASM51225v2.60|T459_35378	limit	START_END	D	-1701	-1	.	0	0	0	0
T459_35378|Capsicum_annuum.ASM51225v2.60|T459_35378	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-289	-274	GAAACACCAAACCCCT	8.8	1.8e-05	-10.940	4.751	1	1
T459_35378|Capsicum_annuum.ASM51225v2.60|T459_35378	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-410	-395	TTTCCGCCAACCTACC	7.1	6.7e-05	-9.610	4.174	2	2
T459_32000|Capsicum_annuum.ASM51225v2.60|T459_32000	limit	START_END	D	-1701	-1	.	0	0	0	0
AUR62013165.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62013165.v1.0	limit	START_END	D	-1701	-1	.	0	0	0	0
AUR62013165.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62013165.v1.0	site	oligos_6-8nt_m1oligos_6-8nt_m1	R	-633	-618	TGCCCACCAACCCTCT	10.9	2.5e-06	-12.898	5.602	1	1
AUR62013165.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62013165.v1.0	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-356	-341	TCTCCACCAAATCCTC	8.2	2.9e-05	-10.447	4.537	2	2
Cla97C08G147910|Citrullus_lanatus.Cla97_v1.62|Cla97C08G147910	limit	START_END	D	-450	-1	.	0	0	0	0
Cla97C10G192540|Citrullus_lanatus.Cla97_v1.62|Cla97C10G192540	limit	START_END	D	-1701	-1	.	0	0	0	0
MELO3C024826.2|Cucumis_melo.Melonv4.60|MELO3C024826.2	limit	START_END	D	-1701	-1	.	0	0	0	0
MELO3C024827.2|Cucumis_melo.Melonv4.60|MELO3C024827.2	limit	START_END	D	-1701	-1	.	0	0	0	0
Csa_4G111580|Cucumis_sativus.ASM407v2.60|Csa_4G111580	limit	START_END	D	-1701	-1	.	0	0	0	0
Csa_4G111590|Cucumis_sativus.ASM407v2.60|Csa_4G111590	limit	START_END	D	-1701	-1	.	0	0	0	0
Csa_6G029440|Cucumis_sativus.ASM407v2.60|Csa_6G029440	limit	START_END	D	-1701	-1	.	0	0	0	0
Csa_6G029440|Cucumis_sativus.ASM407v2.60|Csa_6G029440	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-113	-98	CGACCACCAACCGGCT	7.8	4.0e-05	-10.131	4.400	1	1
Csa_6G029440|Cucumis_sativus.ASM407v2.60|Csa_6G029440	site	oligos_6-8nt_m1oligos_6-8nt_m1	R	-340	-325	TCTACACCNNNNNNNN	6.5	1.0e-04	-9.169	3.982	2	2
HanXRQr2_Chr10g0444301|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr10g0444301	limit	START_END	D	-1701	-1	.	0	0	0	0
HanXRQr2_Chr16g0751271|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr16g0751271	limit	START_END	D	-1701	-1	.	0	0	0	0
gene-LSAT_5X108740|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_5X108740	limit	START_END	D	-1701	-1	.	0	0	0	0
gene-LSAT_9X115140|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_9X115140	limit	START_END	D	-1701	-1	.	0	0	0	0
gene7299|Medicago_truncatula.MtrunA17r50ANR.60|gene7299	limit	START_END	D	-1701	-1	.	0	0	0	0
107780053|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107780053	limit	START_END	D	-1701	-1	.	0	0	0	0
107789601|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107789601	limit	START_END	D	-1701	-1	.	0	0	0	0
107789601|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107789601	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-1571	-1556	CAGTCGCCAACCCACA	8.1	3.1e-05	-10.367	4.502	1	1
gene-LOC110802506|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110802506	limit	START_END	D	-1701	-1	.	0	0	0	0
BVRB_4g085970|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g085970	limit	START_END	D	-1701	-1	.	0	0	0	0
BVRB_4g085970|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g085970	site	oligos_6-8nt_m1oligos_6-8nt_m1	R	-609	-594	TGTTCACCNNNNNNNN	6.8	8.4e-05	-9.384	4.075	1	1
BVRB_9g206550|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_9g206550	limit	START_END	D	-1701	-1	.	0	0	0	0
T459_20146|Capsicum_annuum.ASM51225v2.60|T459_20146	limit	START_END	D	-1701	-1	.	0	0	0	0
T459_20146|Capsicum_annuum.ASM51225v2.60|T459_20146	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-1227	-1212	CATTCATCTACCACCT	7.9	3.7e-05	-10.217	4.437	1	1
T459_20168|Capsicum_annuum.ASM51225v2.60|T459_20168	limit	START_END	D	-1701	-1	.	0	0	0	0
AUR62002952.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62002952.v1.0	limit	START_END	D	-1701	-1	.	0	0	0	0
AUR62002952.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62002952.v1.0	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-250	-235	ACCCCACCAAACCCTT	10.4	4.1e-06	-12.407	5.388	1	1
AUR62007757.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62007757.v1.0	limit	START_END	D	-1701	-1	.	0	0	0	0
Cla97C02G043390|Citrullus_lanatus.Cla97_v1.62|Cla97C02G043390	limit	START_END	D	-1701	-1	.	0	0	0	0
Csa_6G128550|Cucumis_sativus.ASM407v2.60|Csa_6G128550	limit	START_END	D	-319	-1	.	0	0	0	0
HanXRQr2_Chr06g0245991|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr06g0245991	limit	START_END	D	-1701	-1	.	0	0	0	0
HanXRQr2_Chr06g0247881|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr06g0247881	limit	START_END	D	-1701	-1	.	0	0	0	0
gene-LSAT_3X37280|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_3X37280	limit	START_END	D	-1701	-1	.	0	0	0	0
gene-LSAT_3X37280|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_3X37280	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-20	-5	ATTTCATCAACCTCGA	6.9	7.8e-05	-9.464	4.110	1	1
gene-LSAT_4X70021|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_4X70021	limit	START_END	D	-1701	-1	.	0	0	0	0
gene-LSAT_4X70021|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_4X70021	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-27	-12	TCATCTTCAACCCCCA	6.8	8.4e-05	-9.384	4.075	1	1
gene22259|Medicago_truncatula.MtrunA17r50ANR.60|gene22259	limit	START_END	D	-201	-1	.	0	0	0	0
gene3683|Medicago_truncatula.MtrunA17r50ANR.60|gene3683	limit	START_END	D	-1701	-1	.	0	0	0	0
107796682|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796682	limit	START_END	D	-1701	-1	.	0	0	0	0
107825203|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107825203	limit	START_END	D	-1701	-1	.	0	0	0	0
107825203|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107825203	site	oligos_6-8nt_m1oligos_6-8nt_m1	R	-1058	-1043	TTTTCAACAACCCCCA	10.0	6.0e-06	-12.024	5.222	1	1
gene-LOC110799892|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110799892	limit	START_END	D	-1701	-1	.	0	0	0	0
BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400	limit	START_END	D	-455	-1	.	0	0	0	0
BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340	limit	START_END	D	-1701	-1	.	0	0	0	0
T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445	limit	START_END	D	-1701	-1	.	0	0	0	0
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	limit	START_END	D	-1701	-1	.	0	0	0	0
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	limit	START_END	D	-1701	-1	.	0	0	0	0
Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070	limit	START_END	D	-1701	-1	.	0	0	0	0
Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-809	-794	GCCCCACCAAACACTA	9.7	8.0e-06	-11.735	5.096	1	1
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	limit	START_END	D	-1701	-1	.	0	0	0	0
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	limit	START_END	D	-1701	-1	.	0	0	0	0
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	oligos_6-8nt_m1oligos_6-8nt_m1	R	-351	-336	TCTTCTCCAAACNNNN	7.8	4.0e-05	-10.131	4.400	1	1
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	limit	START_END	D	-1701	-1	.	0	0	0	0
HanXRQr2_Chr13g0574181|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574181	limit	START_END	D	-1701	-1	.	0	0	0	0
HanXRQr2_Chr13g0574181|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574181	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-105	-90	GCATCATCAACCCTTC	7.1	6.7e-05	-9.610	4.174	1	1
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	limit	START_END	D	-1701	-1	.	0	0	0	0
gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542	limit	START_END	D	-1701	-1	.	0	0	0	0
gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542	site	oligos_6-8nt_m1oligos_6-8nt_m1	R	-751	-736	GGTACACCAACCCTTT	9.9	6.6e-06	-11.932	5.182	1	1
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	limit	START_END	D	-1701	-1	.	0	0	0	0
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	limit	START_END	D	-1701	-1	.	0	0	0	0
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-834	-819	CCCTCCCCAAACCCTA	7.5	5.0e-05	-9.901	4.300	1	1
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-843	-828	TACACACCACCCTCCC	7.3	5.8e-05	-9.758	4.238	2	2
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	limit	START_END	D	-1701	-1	.	0	0	0	0
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	limit	START_END	D	-1701	-1	.	0	0	0	0
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	limit	START_END	D	-1701	-1	.	0	0	0	0
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	limit	START_END	D	-1701	-1	.	0	0	0	0
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-1664	-1649	TCTCCACCAACCATGC	9.7	8.0e-06	-11.735	5.096	1	1
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m1oligos_6-8nt_m1	R	-1295	-1280	CATTCAACAACCACAT	7.7	4.3e-05	-10.053	4.366	2	2
AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-1499	-1484	AACTCACCAACCAGTT	7.6	4.6e-05	-9.984	4.336	3	3
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	limit	START_END	D	-1648	-1	.	0	0	0	0
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-1073	-1058	TCTCCACCTACCAAAT	8.5	2.3e-05	-10.700	4.647	1	1
GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-1306	-1291	GACTCACGAACCCTAC	6.5	1.0e-04	-9.169	3.982	2	2
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	limit	START_END	D	-1701	-1	.	0	0	0	0
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-1081	-1066	TCTCCACCTACCAAAT	8.5	2.3e-05	-10.700	4.647	1	1
GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-1282	-1267	GACTCACGAACCCTAC	6.5	1.0e-04	-9.169	3.982	2	2
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	limit	START_END	D	-1701	-1	.	0	0	0	0
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-800	-785	AACTCACCAACCAAGC	9.0	1.5e-05	-11.117	4.828	1	1
GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-1419	-1404	TCTCCACCTACCAAGT	8.4	2.4e-05	-10.618	4.611	2	2
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	limit	START_END	D	-1659	-1	.	0	0	0	0
GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-1163	-1148	TCTCCACCTACCAAGT	8.4	2.4e-05	-10.618	4.611	1	1
A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA	limit	START_END	D	-1626	-1	.	0	0	0	0
GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400	limit	START_END	D	-1701	-1	.	0	0	0	0
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	limit	START_END	D	-1701	-1	.	0	0	0	0
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-1032	-1017	GGCTCACCAACCTAAG	9.1	1.4e-05	-11.193	4.861	1	1
gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931	site	oligos_6-8nt_m1oligos_6-8nt_m1	R	-354	-339	AACTCACCAACTCAAA	6.8	8.4e-05	-9.384	4.075	2	2
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	limit	START_END	D	-973	-1	.	0	0	0	0
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-505	-490	CGATCACCTACCCCTA	11.7	1.0e-06	-13.793	5.990	1	1
Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915	site	oligos_6-8nt_m1oligos_6-8nt_m1	R	-646	-631	GGTCCACCAACTCTTT	6.7	9.0e-05	-9.311	4.044	2	2
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	limit	START_END	D	-433	-1	.	0	0	0	0
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-249	-234	CGATCACCTACCCCTA	11.7	1.0e-06	-13.793	5.990	1	1
PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000	site	oligos_6-8nt_m1oligos_6-8nt_m1	R	-391	-376	GGTCCACCAACTCTTT	6.7	9.0e-05	-9.311	4.044	2	2
Solyc11g072100.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc11g072100.ITAG4.0	limit	START_END	D	-1701	-1	.	0	0	0	0
AT3G12900|Arabidopsis_thaliana.TAIR10.60|AT3G12900	limit	START_END	D	-1701	-1	.	0	0	0	0
AT3G12900|Arabidopsis_thaliana.TAIR10.60|AT3G12900	site	oligos_6-8nt_m1oligos_6-8nt_m1	R	-416	-401	CATTTACCAACCCCCC	12.1	6.5e-07	-14.241	6.185	1	1
GSBRNA2T00000146001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g26300D	limit	START_END	D	-1701	-1	.	0	0	0	0
GSBRNA2T00020767001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g73310D	limit	START_END	D	-1701	-1	.	0	0	0	0
GSBRNA2T00020767001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g73310D	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-94	-79	TTTTGTCCAACCACCC	7.7	4.3e-05	-10.053	4.366	1	1
GSBRNA2T00020768001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g73320D	limit	START_END	D	-1701	-1	.	0	0	0	0
GSBRNA2T00020768001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g73320D	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-94	-79	TTTTGTCCAACCACCC	7.7	4.3e-05	-10.053	4.366	1	1
GSBRNA2T00026360001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC01g38190D	limit	START_END	D	-1701	-1	.	0	0	0	0
A01p052810.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A01p052810.1_BraROA	limit	START_END	D	-1701	-1	.	0	0	0	0
A01p052810.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A01p052810.1_BraROA	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-94	-79	TTTTGTCCAACCGCTC	6.6	9.6e-05	-9.246	4.016	1	1
A03p039990.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p039990.1_BraROA	limit	START_END	D	-1701	-1	.	0	0	0	0
A03p039990.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p039990.1_BraROA	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-94	-79	TTTTGTCCAACCACCC	7.7	4.3e-05	-10.053	4.366	1	1
A05p046620.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A05p046620.1_BraROA	limit	START_END	D	-1701	-1	.	0	0	0	0
GLYMA_08G169100|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G169100	limit	START_END	D	-1701	-1	.	0	0	0	0
GLYMA_08G169100|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G169100	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-522	-507	AAATCACCTACCGCTG	8.0	3.4e-05	-10.287	4.468	1	1
gene-Lalb_Chr20g0108651|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr20g0108651	limit	START_END	D	-1701	-1	.	0	0	0	0
gene-Lalb_Chr01g0015881|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr01g0015881	limit	START_END	D	-1701	-1	.	0	0	0	0
gene-Lalb_Chr01g0015881|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr01g0015881	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-1015	-1000	CGTACACCACCTACCT	6.6	9.6e-05	-9.246	4.016	1	1
Prudul26B035414|Prunus_dulcis.ALMONDv2.60|Prudul26B035414	limit	START_END	D	-1701	-1	.	0	0	0	0
PRUPE_4G138300|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_4G138300	limit	START_END	D	-1701	-1	.	0	0	0	0
PRUPE_4G138300|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_4G138300	site	oligos_6-8nt_m1oligos_6-8nt_m1	R	-823	-808	ACCCCACCCACCACTC	6.7	9.0e-05	-9.311	4.044	1	1
AT4G31940|Arabidopsis_thaliana.TAIR10.60|CYP82C4	limit	START_END	D	-1269	-1	.	0	0	0	0
AT4G31940|Arabidopsis_thaliana.TAIR10.60|CYP82C4	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-190	-175	AAATCACCAAACACAC	7.8	4.0e-05	-10.131	4.400	1	1
AT4G31940|Arabidopsis_thaliana.TAIR10.60|CYP82C4	site	oligos_6-8nt_m1oligos_6-8nt_m1	R	-294	-279	CATACACCTACCGATT	7.2	6.3e-05	-9.676	4.202	2	2
GSBRNA2T00011262001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g67210D	limit	START_END	D	-1701	-1	.	0	0	0	0
GSBRNA2T00011262001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g67210D	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-239	-224	AACCCACCAAACACAT	7.4	5.4e-05	-9.833	4.270	1	1
GSBRNA2T00021899001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA08g12300D	limit	START_END	D	-1701	-1	.	0	0	0	0
GSBRNA2T00021899001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA08g12300D	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-537	-522	TCATTACCAACCCCAC	10.5	3.7e-06	-12.501	5.429	1	1
GSBRNA2T00021899001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA08g12300D	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-239	-224	AACCCACCAAACACAT	7.4	5.4e-05	-9.833	4.270	2	2
A08p025520.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A08p025520.1_BraROA	limit	START_END	D	-1701	-1	.	0	0	0	0
A08p025520.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A08p025520.1_BraROA	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-448	-433	TCATTACCAACCCACT	9.5	9.5e-06	-11.559	5.020	1	1
A08p025520.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A08p025520.1_BraROA	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-182	-167	AACCCACCAAACACAT	7.4	5.4e-05	-9.833	4.270	2	2
GLYMA_04G035600|Glycine_max.Glycine_max_v2.1.60|GLYMA_04G035600	limit	START_END	D	-1701	-1	.	0	0	0	0
gene-Lalb_Chr23g0266791|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr23g0266791	limit	START_END	D	-1701	-1	.	0	0	0	0
gene-Lalb_Chr23g0266791|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr23g0266791	site	oligos_6-8nt_m1oligos_6-8nt_m1	R	-659	-644	CTATTACCAACCACTT	8.2	2.9e-05	-10.447	4.537	1	1
Prudul26B028905|Prunus_dulcis.ALMONDv2.60|Prudul26B028905	limit	START_END	D	-1032	-1	.	0	0	0	0
Prudul26B028905|Prunus_dulcis.ALMONDv2.60|Prudul26B028905	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-380	-365	CTTCCACCAACCACCN	12.2	5.8e-07	-14.358	6.235	1	1
PRUPE_1G387700|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_1G387700	limit	START_END	D	-998	-1	.	0	0	0	0
PRUPE_1G387700|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_1G387700	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-376	-361	CTTCCACCAACCACCN	12.2	5.8e-07	-14.358	6.235	1	1
gene:Solyc12g088970.1.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|gene:Solyc12g088970.1.ITAG4.0	limit	START_END	D	-1464	-1	.	0	0	0	0
gene:Solyc12g088970.1.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|gene:Solyc12g088970.1.ITAG4.0	site	oligos_6-8nt_m1oligos_6-8nt_m1	R	-1392	-1377	CCTCCACCAACCTCCC	13.1	1.8e-07	-15.554	6.755	1	1
gene:Solyc12g088970.1.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|gene:Solyc12g088970.1.ITAG4.0	site	oligos_6-8nt_m1oligos_6-8nt_m1	R	-1434	-1419	AGCCCACCAAACCAAA	7.3	5.8e-05	-9.758	4.238	2	2
gene:Solyc12g088970.1.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|gene:Solyc12g088970.1.ITAG4.0	site	oligos_6-8nt_m1oligos_6-8nt_m1	R	-1369	-1354	GTTACCCCTACCCCCC	7.2	6.3e-05	-9.676	4.202	3	3
AT1G28680|Arabidopsis_thaliana.TAIR10.60|AT1G28680	limit	START_END	D	-201	-1	.	0	0	0	0
AT1G28680|Arabidopsis_thaliana.TAIR10.60|AT1G28680	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-127	-112	TTCTCACCAACCACTC	11.9	8.1e-07	-14.029	6.093	1	1
GSBRNA2T00056005001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA09g27140D	limit	START_END	D	-1701	-1	.	0	0	0	0
GSBRNA2T00056005001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA09g27140D	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-157	-142	TTCTCACCAACCTTCC	10.0	6.0e-06	-12.024	5.222	1	1
GSBRNA2T00046289001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g22050D	limit	START_END	D	-1701	-1	.	0	0	0	0
GSBRNA2T00046289001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g22050D	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-240	-225	TACACACCAAACCAAA	6.8	8.4e-05	-9.384	4.075	1	1
A09p048520.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A09p048520.1_BraROA	limit	START_END	D	-1701	-1	.	0	0	0	0
A09p048520.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A09p048520.1_BraROA	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-157	-142	TTCTCACCAACCTTCC	10.0	6.0e-06	-12.024	5.222	1	1
GLYMA_13G232400|Glycine_max.Glycine_max_v2.1.60|GLYMA_13G232400	limit	START_END	D	-1701	-1	.	0	0	0	0
GLYMA_13G232400|Glycine_max.Glycine_max_v2.1.60|GLYMA_13G232400	site	oligos_6-8nt_m1oligos_6-8nt_m1	R	-154	-139	AGCTCACCAAACACAG	9.3	1.1e-05	-11.377	4.941	1	1
GLYMA_13G232400|Glycine_max.Glycine_max_v2.1.60|GLYMA_13G232400	site	oligos_6-8nt_m1oligos_6-8nt_m1	R	-22	-7	CTCACACCAAACCCAG	9.2	1.3e-05	-11.279	4.899	2	2
GLYMA_13G232400|Glycine_max.Glycine_max_v2.1.60|GLYMA_13G232400	site	oligos_6-8nt_m1oligos_6-8nt_m1	R	-184	-169	ACACCACCTACCCTAC	8.8	1.8e-05	-10.940	4.751	3	3
gene-Lalb_Chr20g0121341|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr20g0121341	limit	START_END	D	-1640	-1	.	0	0	0	0
gene-Lalb_Chr20g0121341|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr20g0121341	site	oligos_6-8nt_m1oligos_6-8nt_m1	R	-197	-182	ATCTCACCAAACCCAT	10.6	3.4e-06	-12.586	5.466	1	1
Prudul26B009025|Prunus_dulcis.ALMONDv2.60|Prudul26B009025	limit	START_END	D	-1323	-1	.	0	0	0	0
Prudul26B009025|Prunus_dulcis.ALMONDv2.60|Prudul26B009025	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-28	-13	ACAACACCAACCCATC	9.2	1.3e-05	-11.279	4.899	1	1
Prudul26B009025|Prunus_dulcis.ALMONDv2.60|Prudul26B009025	site	oligos_6-8nt_m1oligos_6-8nt_m1	R	-395	-380	TTCCCAACAACCCCCG	8.6	2.1e-05	-10.773	4.679	2	2
PRUPE_4G057600|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_4G057600	limit	START_END	D	-545	-1	.	0	0	0	0
PRUPE_4G057600|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_4G057600	site	oligos_6-8nt_m1oligos_6-8nt_m1	R	-394	-379	TTCCCAACAACCCCCG	8.6	2.1e-05	-10.773	4.679	1	1
Solyc04g079720.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc04g079720.ITAG4.0	limit	START_END	D	-1701	-1	.	0	0	0	0
Solyc04g079720.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc04g079720.ITAG4.0	site	oligos_6-8nt_m1oligos_6-8nt_m1	D	-216	-201	TGACCACCTACCTACC	7.2	6.3e-05	-9.676	4.202	1	1
Solyc04g079720.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc04g079720.ITAG4.0	site	oligos_6-8nt_m1oligos_6-8nt_m1	R	-473	-458	GTTTCATCTACCTCTC	6.6	9.6e-05	-9.246	4.016	2	2
;
; Matrices
;	matrix	name                          	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_6-8nt_m1oligos_6-8nt_m1	16	4	1	-40.100	17.400	57.500	a:0.333 c:0.184 g:0.157 t:0.326 
; Number of sequences scanned	95
; Sum of sequence lengths	148914
; N residues           	34519
; Matches per matrix
;	matrix	name                          	matches	scored
;	1	oligos_6-8nt_m1oligos_6-8nt_m1	69	294978
;		TOTAL          	69	294978
; Host name	rsat
; Job started	2026-07-22.120657
; Job done	2026-07-22.120725
; Seconds	27.93
;	user	27.94
;	system	0.01
;	cuser	0.09
;	csystem	0.03