; dyad-analysis  -i $RSAT/public_html/tmp/www-data/2026/07/23/tmp_sequence_2026-07-23.104238_7eljvH.fasta.purged -v 1 -quick -sort -timeout 3600 -type any -2str -noov -lth occ 1 -lth occ_sig 0 -uth rank 50 -return occ,proba,rank -l 3 -spacing 0-20
; Citation: van Helden et al. (2000). Nucleic Acids Res. 28(8):1808-18.
; Program version              	1.78
; Input file                   	$RSAT/public_html/tmp/www-data/2026/07/23/tmp_sequence_2026-07-23.104238_7eljvH.fasta.purged
; Sequence type                	DNA
; Nb of sequences              	0
; Sum of sequence lengths      	0
; default return values        	occ,freq
; return values                	occ,exp_freq,exp_occ,proba,rank
; Discard overlapping matches
; Counted on both strands
; 	grouped by pairs of reverse complements
; Monad parameters             
; 	monad size                  	3
; 	monad positions              0
; 	    valid                    	0
; 	    discarded                	0 (contain other letters than ACGT)
; 	distinct monads              64
; Dyad parameters              
; 	dyad type                    any dyad
; 	minimal spacing              0
; 	maximal spacing              20
; 	distinct dyads               	43680
; 	dyads tested for significance	0
;	Dyad counts per spacing
;		spacing	max_pos	occ	ovlps	ovl+occ	ACGT	nonACGT
;		sp 0				0		
;		sp 1				0		
;		sp 2				0		
;		sp 3				0		
;		sp 4				0		
;		sp 5				0		
;		sp 6				0		
;		sp 7				0		
;		sp 8				0		
;		sp 9				0		
;		sp 10				0		
;		sp 11				0		
;		sp 12				0		
;		sp 13				0		
;		sp 14				0		
;		sp 15				0		
;		sp 16				0		
;		sp 17				0		
;		sp 18				0		
;		sp 19				0		
;		sp 20				0		
; Estimation of expected dyad frequencies
;	Background model	monads
;	Monad calibration from input sequences
; Sequences:
;	Analyzed by count-words
; column headers
;	1	sequence       	
;	2	identifier             	
;	3	expected_freq  	
;	4	occ            	observed occurrences
;	5	exp_occ        	expected occurrences
;	6	occ_P          	occurrence probability (binomial)
;	7	occ_E          	E-value for occurrences (binomial)
;	8	occ_sig        	occurrence significance (binomial)
;	9	rank           	rank
;	10	ovl_occ        	number of overlapping occurrences
;	11	all_occ        	number of non-overlapping + overlapping occurrences
;	12	ov_coef        	overlap coefficient
;	13	remark         	remark (dir_rep=direct repeat; rc_pal=reverse complementary palindrom)
#sequence  	identifier             	expected_freq	occ	exp_occ	occ_P	occ_E	occ_sig	rank	ovl_occ	all_occ	ov_coef	remark
; Host name	rsat
; Job started	2026-07-23.104238
; Job done	2026-07-23.104239
; Seconds	0.11
;	user	0.11
;	system	0
;	cuser	0.09
;	csystem	0.02