; matrix-scan -v 1 -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/07/23/matrix-scan_2026-07-23.095053_PJQkrt.matrix -pseudo 1 -decimals 1 -2str -origin end -offset -200 -bginput -markov 1 -bg_pseudo 0.01 -return limits -return sites -return pval -return rank -lth score 1 -uth pval 1e-4 -i $RSAT/public_html/tmp/www-data/2026/07/23/tmp_sequence_2026-07-23.095053_JOBHJg.fasta -seq_format fasta -n score ; Slow counting mode ; Input files ; input $RSAT/public_html/tmp/www-data/2026/07/23/tmp_sequence_2026-07-23.095053_JOBHJg.fasta ; Matrix files ; matrix 1 $RSAT/public_html/tmp/www-data/2026/07/23/matrix-scan_2026-07-23.095053_PJQkrt.matrix ; Sequence format fasta ; Pseudo counts 1 ; Background model ; Method input ; Markov order 1 ; Strand undef ; Background pseudo-frequency 0.01 ; Residue probabilities ; a 0.33094 ; c 0.18574 ; g 0.16059 ; t 0.32273 ; Thresholds lower upper ; pval NA 0.0001 ; score 1 NA ; Output columns ; 1 seq_id ; 2 ft_type ; 3 ft_name ; 4 strand ; 5 start ; 6 end ; 7 sequence ; 8 weight #seq_id ft_type ft_name strand start end sequence weight Pval ln_Pval sig rank rank_pm AT3G13610|Arabidopsis_thaliana.TAIR10.60|F6'H1 limit START_END D -1501 199 . 0 0 0 0 GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D limit START_END D -1448 199 . 0 0 0 0 GSBRNA2T00023848001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g39690D site oligos_6-8nt_m7oligos_6-8nt_m7 R -125 -111 TGAGCGAACAACCTA 11.7 1.1e-06 -13.710 5.954 1 1 GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D limit START_END D -1501 199 . 0 0 0 0 GSBRNA2T00104708001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g25780D site oligos_6-8nt_m7oligos_6-8nt_m7 R -125 -111 TGAGCGAACAACCTA 11.7 1.1e-06 -13.710 5.954 1 1 GSBRNA2T00123637001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g38030D limit START_END D -1501 199 . 0 0 0 0 GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D limit START_END D -1459 199 . 0 0 0 0 GSBRNA2T00137685001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g32900D site oligos_6-8nt_m7oligos_6-8nt_m7 R -125 -111 TGAGCGAACAACCTA 11.7 1.1e-06 -13.710 5.954 1 1 A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA limit START_END D -1426 199 . 0 0 0 0 A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA site oligos_6-8nt_m7oligos_6-8nt_m7 R -125 -111 TGAGCGAACAACCTA 11.7 1.1e-06 -13.710 5.954 1 1 A03p040480.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p040480.1_BraROA site oligos_6-8nt_m7oligos_6-8nt_m7 R -979 -965 CAGGAGATCAAGTTT 7.5 4.3e-05 -10.059 4.369 2 2 GLYMA_07G124400|Glycine_max.Glycine_max_v2.1.60|GLYMA_07G124400 limit START_END D -1501 199 . 0 0 0 0 gene-Lalb_Chr13g0290931|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0290931 limit START_END D -1501 199 . 0 0 0 0 107763182|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107763182 limit START_END D -1501 199 . 0 0 0 0 107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648 limit START_END D -1501 199 . 0 0 0 0 107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648 site oligos_6-8nt_m7oligos_6-8nt_m7 R -884 -870 TAGGCGACCAACGTT 16.3 1.9e-10 -22.388 9.723 1 1 107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648 site oligos_6-8nt_m7oligos_6-8nt_m7 D -893 -879 ATAGCGACCAACGTT 15.8 2.7e-09 -19.748 8.576 2 2 107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648 site oligos_6-8nt_m7oligos_6-8nt_m7 R -934 -920 ATAGCGACCAACTTT 15.4 9.6e-09 -18.463 8.018 3 3 107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648 site oligos_6-8nt_m7oligos_6-8nt_m7 D -594 -580 TAAGCGACCAACTTT 15.4 9.6e-09 -18.463 8.018 4 4 107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648 site oligos_6-8nt_m7oligos_6-8nt_m7 D -1048 -1034 AAAGCGACCAACTTT 15.1 1.8e-08 -17.860 7.757 5 5 107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648 site oligos_6-8nt_m7oligos_6-8nt_m7 D -985 -971 ATGGCGACCAACCTT 15.1 1.8e-08 -17.860 7.757 6 6 107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648 site oligos_6-8nt_m7oligos_6-8nt_m7 D -787 -773 AAAGCGACCAACTTT 15.1 1.8e-08 -17.860 7.757 7 7 107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648 site oligos_6-8nt_m7oligos_6-8nt_m7 D -626 -612 AAGGCGACCAAAGTT 13.3 1.7e-07 -15.562 6.759 8 8 107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648 site oligos_6-8nt_m7oligos_6-8nt_m7 R -976 -962 ATGGCGACCAAGGTT 13.1 2.3e-07 -15.289 6.640 9 9 107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648 site oligos_6-8nt_m7oligos_6-8nt_m7 R -661 -647 TTGGCGACCAAAGTT 13.0 2.7e-07 -15.123 6.568 10 10 107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648 site oligos_6-8nt_m7oligos_6-8nt_m7 R -585 -571 AAAGCGACCAAAGTT 12.9 3.1e-07 -14.997 6.513 11 11 107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648 site oligos_6-8nt_m7oligos_6-8nt_m7 R -725 -711 AAAGCGACTAACTTT 12.6 4.1e-07 -14.702 6.385 12 12 107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648 site oligos_6-8nt_m7oligos_6-8nt_m7 D -842 -828 TTTGCGACCAACTTT 12.4 5.0e-07 -14.502 6.298 13 13 107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648 site oligos_6-8nt_m7oligos_6-8nt_m7 R -1039 -1025 CTAGCGACCAAAGTT 12.3 5.5e-07 -14.408 6.257 14 14 107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648 site oligos_6-8nt_m7oligos_6-8nt_m7 R -1028 -1014 AAAGCGACCAACTAG 11.7 1.1e-06 -13.710 5.954 15 15 107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648 site oligos_6-8nt_m7oligos_6-8nt_m7 R -617 -603 AAAGCGATTAACTTT 10.6 3.2e-06 -12.664 5.500 16 16 107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648 site oligos_6-8nt_m7oligos_6-8nt_m7 D -670 -656 GTGGAGACCAACTTT 10.4 3.7e-06 -12.498 5.428 17 17 107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648 site oligos_6-8nt_m7oligos_6-8nt_m7 R -778 -764 TTAGAGACCAAAGTT 9.7 7.4e-06 -11.821 5.134 18 18 107785648|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107785648 site oligos_6-8nt_m7oligos_6-8nt_m7 R -833 -819 TAAGCAACCAAAGTT 7.6 3.9e-05 -10.145 4.406 19 19 107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566 limit START_END D -1501 199 . 0 0 0 0 107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566 site oligos_6-8nt_m7oligos_6-8nt_m7 R -909 -895 TTGGCTACCAGCTCT 8.1 2.7e-05 -10.520 4.569 1 1 107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566 site oligos_6-8nt_m7oligos_6-8nt_m7 D -564 -550 AAGGAGATCAACATC 6.8 7.2e-05 -9.537 4.142 2 2 107796566|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107796566 site oligos_6-8nt_m7oligos_6-8nt_m7 R -652 -638 AAAGAGACCAAAGCA 6.6 8.3e-05 -9.401 4.083 3 3 107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976 limit START_END D -1501 199 . 0 0 0 0 107787976|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107787976 site oligos_6-8nt_m7oligos_6-8nt_m7 D -171 -157 ACGGACACTAACTTT 6.4 9.5e-05 -9.260 4.022 1 1 Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915 limit START_END D -773 199 . 0 0 0 0 Prudul26B000915|Prunus_dulcis.ALMONDv2.60|Prudul26B000915 site oligos_6-8nt_m7oligos_6-8nt_m7 R -444 -430 TGGTCCACCAACTCT 8.2 2.5e-05 -10.599 4.603 1 1 PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000 limit START_END D -233 199 . 0 0 0 0 PRUPE_6G006000|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_6G006000 site oligos_6-8nt_m7oligos_6-8nt_m7 R -189 -175 TGGTCCACCAACTCT 8.2 2.5e-05 -10.599 4.603 1 1 Solyc11g072100.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc11g072100.ITAG4.0 limit START_END D -1501 199 . 0 0 0 0 Solyc11g072100.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc11g072100.ITAG4.0 site oligos_6-8nt_m7oligos_6-8nt_m7 R -900 -886 TAGGCGATCAAGCAT 10.1 5.0e-06 -12.205 5.301 1 1 AT3G12900|Arabidopsis_thaliana.TAIR10.60|AT3G12900 limit START_END D -1501 199 . 0 0 0 0 GSBRNA2T00000146001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA05g26300D limit START_END D -1501 199 . 0 0 0 0 GSBRNA2T00020767001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g73310D limit START_END D -1501 199 . 0 0 0 0 GSBRNA2T00020768001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g73320D limit START_END D -1501 199 . 0 0 0 0 GSBRNA2T00026360001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC01g38190D limit START_END D -1501 199 . 0 0 0 0 A01p052810.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A01p052810.1_BraROA limit START_END D -1501 199 . 0 0 0 0 A03p039990.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p039990.1_BraROA limit START_END D -1501 199 . 0 0 0 0 A03p039990.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A03p039990.1_BraROA site oligos_6-8nt_m7oligos_6-8nt_m7 R -978 -964 TTAGCTACCNNNNNN 6.3 1.0e-04 -9.190 3.991 1 1 A05p046620.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A05p046620.1_BraROA limit START_END D -1501 199 . 0 0 0 0 GLYMA_08G169100|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G169100 limit START_END D -1501 199 . 0 0 0 0 gene-Lalb_Chr20g0108651|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr20g0108651 limit START_END D -1501 199 . 0 0 0 0 gene-Lalb_Chr01g0015881|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr01g0015881 limit START_END D -1501 199 . 0 0 0 0 107821681|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107821681 limit START_END D -1501 199 . 0 0 0 0 Prudul26B035414|Prunus_dulcis.ALMONDv2.60|Prudul26B035414 limit START_END D -1501 199 . 0 0 0 0 PRUPE_4G138300|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_4G138300 limit START_END D -1501 199 . 0 0 0 0 AT4G31940|Arabidopsis_thaliana.TAIR10.60|CYP82C4 limit START_END D -1069 199 . 0 0 0 0 AT4G31940|Arabidopsis_thaliana.TAIR10.60|CYP82C4 site oligos_6-8nt_m7oligos_6-8nt_m7 R -471 -457 AGCGTGACCAACGTC 8.4 2.1e-05 -10.764 4.675 1 1 GSBRNA2T00011262001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g67210D limit START_END D -1501 199 . 0 0 0 0 GSBRNA2T00021899001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA08g12300D limit START_END D -1501 199 . 0 0 0 0 GSBRNA2T00021899001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA08g12300D site oligos_6-8nt_m7oligos_6-8nt_m7 D -858 -844 AAGGCCACCACCATT 8.1 2.7e-05 -10.520 4.569 1 1 GSBRNA2T00021899001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA08g12300D site oligos_6-8nt_m7oligos_6-8nt_m7 R -568 -554 TAAGCCGACAACTTT 6.3 1.0e-04 -9.190 3.991 2 2 A08p025520.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A08p025520.1_BraROA limit START_END D -1501 199 . 0 0 0 0 A08p025520.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A08p025520.1_BraROA site oligos_6-8nt_m7oligos_6-8nt_m7 D -731 -717 AAGGCCACCACCATT 8.1 2.7e-05 -10.520 4.569 1 1 GLYMA_04G035600|Glycine_max.Glycine_max_v2.1.60|GLYMA_04G035600 limit START_END D -1501 199 . 0 0 0 0 gene-Lalb_Chr23g0266791|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr23g0266791 limit START_END D -1501 199 . 0 0 0 0 107782393|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107782393 limit START_END D -1501 199 . 0 0 0 0 107790829|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107790829 limit START_END D -1501 199 . 0 0 0 0 107790829|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107790829 site oligos_6-8nt_m7oligos_6-8nt_m7 R -1323 -1309 AAGACGAACACCGTT 7.1 5.8e-05 -9.764 4.240 1 1 107790829|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107790829 site oligos_6-8nt_m7oligos_6-8nt_m7 R -1398 -1384 TATGCCACCAACACT 6.3 1.0e-04 -9.190 3.991 2 2 Prudul26B028905|Prunus_dulcis.ALMONDv2.60|Prudul26B028905 limit START_END D -832 199 . 0 0 0 0 PRUPE_1G387700|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_1G387700 limit START_END D -798 199 . 0 0 0 0 PRUPE_1G387700|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_1G387700 site oligos_6-8nt_m7oligos_6-8nt_m7 D 162 176 GCGGAGACCAGCTTC 6.5 8.9e-05 -9.323 4.049 1 1 gene:Solyc12g088970.1.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|gene:Solyc12g088970.1.ITAG4.0 limit START_END D -1264 199 . 0 0 0 0 AT1G28680|Arabidopsis_thaliana.TAIR10.60|AT1G28680 limit START_END D -1 199 . 0 0 0 0 GSBRNA2T00056005001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA09g27140D limit START_END D -1501 199 . 0 0 0 0 GSBRNA2T00046289001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC05g22050D limit START_END D -1501 199 . 0 0 0 0 A09p048520.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A09p048520.1_BraROA limit START_END D -1501 199 . 0 0 0 0 GLYMA_13G232400|Glycine_max.Glycine_max_v2.1.60|GLYMA_13G232400 limit START_END D -1501 199 . 0 0 0 0 gene-Lalb_Chr20g0121341|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr20g0121341 limit START_END D -1440 199 . 0 0 0 0 gene-Lalb_Chr20g0121341|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr20g0121341 site oligos_6-8nt_m7oligos_6-8nt_m7 D -1421 -1407 TTGGGGACCAACGTT 10.0 5.5e-06 -12.119 5.263 1 1 107773785|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107773785 limit START_END D -1501 199 . 0 0 0 0 Prudul26B009025|Prunus_dulcis.ALMONDv2.60|Prudul26B009025 limit START_END D -1123 199 . 0 0 0 0 PRUPE_4G057600|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_4G057600 limit START_END D -345 199 . 0 0 0 0 Solyc04g079720.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc04g079720.ITAG4.0 limit START_END D -1501 199 . 0 0 0 0 ; ; Matrices ; matrix name ncol nrow pseudo Wmin Wmax Wrange ; 1 oligos_6-8nt_m7oligos_6-8nt_m7 15 4 1 -41.300 15.900 57.200 a:0.331 c:0.186 g:0.161 t:0.323 ; Number of sequences scanned 50 ; Sum of sequence lengths 77748 ; N residues 13976 ; Matches per matrix ; matrix name matches scored ; 1 oligos_6-8nt_m7oligos_6-8nt_m7 40 154096 ; TOTAL 40 154096 ; Host name rsat ; Job started 2026-07-23.095053 ; Job done 2026-07-23.095107 ; Seconds 14.13 ; user 14.13 ; system 0.03 ; cuser 0.09 ; csystem 0.02