; matrix-scan  -v 1 -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/07/23/matrix-scan_2026-07-23.103725_r8T3su.matrix -pseudo 1 -decimals 1 -2str -origin end -offset -200 -bginput -markov 1 -bg_pseudo 0.01 -return limits -return sites -return pval -return rank -lth score 1 -uth pval 1e-3 -i $RSAT/public_html/tmp/www-data/2026/07/23/tmp_sequence_2026-07-23.103725_7l44Wi.fasta -seq_format fasta -n score
; Slow counting mode            
; Input files
;	input	$RSAT/public_html/tmp/www-data/2026/07/23/tmp_sequence_2026-07-23.103725_7l44Wi.fasta
; Matrix files
;	matrix 1	$RSAT/public_html/tmp/www-data/2026/07/23/matrix-scan_2026-07-23.103725_r8T3su.matrix
; Sequence format      	fasta
; Pseudo counts        	1
; Background model
;	Method        	input
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.34464
;		c	0.18339
;		g	0.14842
;		t	0.32356
; Thresholds	lower	upper
;	pval  	NA	0.001
;	score 	1    	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight	Pval	ln_Pval	sig	rank	rank_pm
BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400	limit	START_END	D	-255	199	.	0	0	0	0
BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-136	-118	GGTTCATGAATCATGCCTT	8.6	1.4e-05	-11.168	4.850	1	1
BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-136	-118	AAGGCATGATTCATGAACC	7.9	2.3e-05	-10.661	4.630	2	2
BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	12	30	TTGGAAAGTAGCTTGTTGG	4.9	1.8e-04	-8.651	3.757	3	3
BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	12	30	CCAACAAGCTACTTTCCAA	3.5	4.0e-04	-7.816	3.394	4	4
BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-76	-58	TGTGCNNNNNNNNNNNNNN	2.2	8.2e-04	-7.100	3.084	5	5
BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-215	-197	AGANNNNNNNCCNNNNNNN	2.1	8.7e-04	-7.047	3.060	6	6
BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-215	-197	NNNNNNNGGNNNNNNNTCT	1.9	9.7e-04	-6.935	3.012	7	7
BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340	limit	START_END	D	-1501	199	.	0	0	0	0
BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-534	-516	CCTGNNNNNNNNNNNNNNN	2.7	6.3e-04	-7.372	3.202	1	1
BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-534	-516	NNNNNNNNNNNNNNNCAGG	2.7	6.3e-04	-7.372	3.202	2	2
BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-496	-478	NNNNNNNNNNNNNNGCTAA	2.5	7.1e-04	-7.257	3.152	3	3
BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-496	-478	TTAGCNNNNNNNNNNNNNN	2.5	7.1e-04	-7.257	3.152	4	4
BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-879	-861	ATTGAANNNNNNNNNNNNN	1.9	9.7e-04	-6.935	3.012	5	5
BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-110	-92	ACTGTCTGTCGCCTGTCGG	1.8	1.0e-03	-6.882	2.989	6	6
T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445	limit	START_END	D	-1501	199	.	0	0	0	0
T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-364	-346	GCTGNNNNNNNNNNNNNNN	2.0	9.2e-04	-6.994	3.037	1	1
T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-1399	-1381	AGAGCAATCGATATGTATG	1.9	9.7e-04	-6.935	3.012	2	2
T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-806	-788	TGTATATGAGCCANNNNNN	1.8	1.0e-03	-6.882	2.989	3	3
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	limit	START_END	D	-1501	199	.	0	0	0	0
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-845	-827	TTAGCATGGACAATGCCAT	11.0	2.0e-06	-13.133	5.703	1	1
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-845	-827	ATGGCATTGTCCATGCTAA	10.8	2.4e-06	-12.945	5.622	2	2
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-129	-111	GCTGAATGTTTCATGCCAC	10.1	4.4e-06	-12.344	5.361	3	3
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-129	-111	GTGGCATGAAACATTCAGC	9.6	6.5e-06	-11.939	5.185	4	4
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-161	-143	NNNNNNNNNNNNNNGCAGG	4.5	2.2e-04	-8.402	3.649	5	5
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-161	-143	CCTGCNNNNNNNNNNNNNN	4.4	2.4e-04	-8.348	3.625	6	6
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-157	-139	TATGCCTGCNNNNNNNNNN	3.9	3.2e-04	-8.047	3.495	7	7
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-157	-139	NNNNNNNNNNGCAGGCATA	3.8	3.4e-04	-7.989	3.469	8	8
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-106	-88	TATGTATGGACTATACTAT	2.9	5.7e-04	-7.477	3.247	9	9
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-379	-361	AATAAATGGTGAATGTCTT	2.5	7.1e-04	-7.257	3.152	10	10
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-106	-88	ATAGTATAGTCCATACATA	2.4	7.4e-04	-7.203	3.128	11	11
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-52	-34	ATAGNNNNNNNNNNNNNNN	2.3	7.8e-04	-7.154	3.107	12	12
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-379	-361	AAGACATTCACCATTTATT	2.2	8.2e-04	-7.100	3.084	13	13
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-52	-34	NNNNNNNNNNNNNNNCTAT	2.2	8.2e-04	-7.100	3.084	14	14
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-1302	-1284	NNNNNNNNNACCTTGTTGA	2.0	9.2e-04	-6.994	3.037	15	15
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-220	-202	GCTGNNNNNNNNNNNNNNN	2.0	9.2e-04	-6.994	3.037	16	16
T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-1410	-1392	TTGGCATAACTCTTGAATA	1.8	1.0e-03	-6.882	2.989	17	17
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	limit	START_END	D	-1501	199	.	0	0	0	0
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-105	-87	AAGGCATGAATCATCCGCG	8.2	1.9e-05	-10.873	4.722	1	1
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-69	-51	GCGGCATGCTTCGAGCCTT	7.3	3.6e-05	-10.232	4.444	2	2
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-105	-87	CGCGGATGATTCATGCCTT	7.0	4.5e-05	-10.015	4.349	3	3
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-69	-51	AAGGCTCGAAGCATGCCGC	6.7	5.5e-05	-9.809	4.260	4	4
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-727	-709	TAGGCTTGTTGCTTGTACC	2.6	6.6e-04	-7.317	3.178	5	5
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-727	-709	GGTACAAGCAACAAGCCTA	2.5	7.1e-04	-7.257	3.152	6	6
AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-1070	-1052	NNNNNNNNNNNNNNNNCGG	1.8	1.0e-03	-6.882	2.989	7	7
Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070	limit	START_END	D	-1501	199	.	0	0	0	0
Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-1290	-1272	GTAGCAAGTTCATTGTCNN	3.6	3.8e-04	-7.879	3.422	1	1
Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-1290	-1272	NNGACAATGAACTTGCTAC	3.4	4.3e-04	-7.759	3.370	2	2
Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-95	-77	NNNNNNNNNNNNAGGCATT	3.0	5.4e-04	-7.533	3.272	3	3
Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-95	-77	AATGCCTNNNNNNNNNNNN	2.8	6.0e-04	-7.422	3.223	4	4
Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-882	-864	ATGGNNNNNNNNNNNNNNN	2.5	7.1e-04	-7.257	3.152	5	5
Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-882	-864	NNNNNNNNNNNNNNNCCAT	2.2	8.2e-04	-7.100	3.084	6	6
Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-447	-429	NNNNNNNNNNNNNNGTCGG	1.9	9.7e-04	-6.935	3.012	7	7
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	limit	START_END	D	-1501	199	.	0	0	0	0
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-692	-674	GAAGCACGAATCAAGCCAT	5.4	1.3e-04	-8.962	3.892	1	1
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-692	-674	ATGGCTTGATTCGTGCTTC	5.3	1.4e-04	-8.899	3.865	2	2
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-847	-829	ATTGCNNNNNNNNNNNNNN	3.8	3.4e-04	-7.989	3.469	3	3
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-847	-829	NNNNNNNNNNNNNNGCAAT	3.7	3.6e-04	-7.936	3.447	4	4
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-646	-628	TGTGCANNNNNNNNNNNNN	3.1	5.0e-04	-7.595	3.298	5	5
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-704	-686	AAGCCATGGNNNNNNNNNN	2.8	6.0e-04	-7.422	3.223	6	6
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-704	-686	NNNNNNNNNNCCATGGCTT	2.7	6.3e-04	-7.372	3.202	7	7
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-646	-628	NNNNNNNNNNNNNTGCACA	2.6	6.6e-04	-7.317	3.178	8	8
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-709	-691	ATGGNNNNNNNNNNNNNNN	2.5	7.1e-04	-7.257	3.152	9	9
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-331	-313	NNNNNNNNNNNNNNNCATG	2.4	7.4e-04	-7.203	3.128	10	10
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-331	-313	CATGNNNNNNNNNNNNNNN	2.4	7.4e-04	-7.203	3.128	11	11
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-327	-309	NNNNNNNNNNNCATGATAT	2.3	7.8e-04	-7.154	3.107	12	12
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-709	-691	NNNNNNNNNNNNNNNCCAT	2.2	8.2e-04	-7.100	3.084	13	13
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-327	-309	ATATCATGNNNNNNNNNNN	2.0	9.2e-04	-6.994	3.037	14	14
MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-18	0	AGTGNNNNNNNNNNNNNNN	1.9	9.7e-04	-6.935	3.012	15	15
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	limit	START_END	D	-1501	199	.	0	0	0	0
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-311	-293	TCTGCATGAATCATGTTGT	10.5	3.1e-06	-12.691	5.511	1	1
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-311	-293	ACAACATGATTCATGCAGA	10.3	3.7e-06	-12.520	5.438	2	2
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-418	-400	GAAGCACGAATCAAGCCAT	5.4	1.3e-04	-8.962	3.892	3	3
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-418	-400	ATGGCTTGATTCGTGCTTC	5.3	1.4e-04	-8.899	3.865	4	4
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-216	-198	NNNNNNNNNNNNNNGCAGT	4.2	2.7e-04	-8.223	3.571	5	5
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	43	61	NNNNNNNNNNNNNNGCTTG	4.2	2.7e-04	-8.223	3.571	6	6
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-216	-198	ACTGCNNNNNNNNNNNNNN	4.1	2.8e-04	-8.170	3.548	7	7
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	43	61	CAAGCNNNNNNNNNNNNNN	3.7	3.6e-04	-7.936	3.447	8	8
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-220	-202	NCTGACTGCNNNNNNNNNN	2.4	7.4e-04	-7.203	3.128	9	9
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-1263	-1245	NNNNNNNNNNNNNNNCTGT	2.3	7.8e-04	-7.154	3.107	10	10
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-1263	-1245	ACAGNNNNNNNNNNNNNNN	2.2	8.2e-04	-7.100	3.084	11	11
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-641	-623	NNNNNNNNNNNNATGTTTT	2.2	8.2e-04	-7.100	3.084	12	12
Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-220	-202	NNNNNNNNNNGCAGTCAGN	2.1	8.7e-04	-7.047	3.060	13	13
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	limit	START_END	D	-1501	199	.	0	0	0	0
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-174	-156	GATGCATGAGAATGGCCTT	5.3	1.4e-04	-8.899	3.865	1	1
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-73	-55	GATGCATGAGAATGGCCTT	5.3	1.4e-04	-8.899	3.865	2	2
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-174	-156	AAGGCCATTCTCATGCATC	4.3	2.5e-04	-8.288	3.599	3	3
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-73	-55	AAGGCCATTCTCATGCATC	4.3	2.5e-04	-8.288	3.599	4	4
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-163	-145	NNNNNCTGTCGGATGCATG	3.1	5.0e-04	-7.595	3.298	5	5
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-163	-145	CATGCATCCGACAGNNNNN	2.5	7.1e-04	-7.257	3.152	6	6
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-92	-74	ATGGNNNNNNNNNNNNNNN	2.5	7.1e-04	-7.257	3.152	7	7
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-153	-135	NNNNNNNNNNNNNNNCTGT	2.3	7.8e-04	-7.154	3.107	8	8
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-153	-135	ACAGNNNNNNNNNNNNNNN	2.2	8.2e-04	-7.100	3.084	9	9
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-92	-74	NNNNNNNNNNNNNNNCCAT	2.2	8.2e-04	-7.100	3.084	10	10
HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-234	-216	TATGTATGTNNNNNNNNNN	1.9	9.7e-04	-6.935	3.012	11	11
HanXRQr2_Chr13g0574181|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574181	limit	START_END	D	-1501	199	.	0	0	0	0
HanXRQr2_Chr13g0574181|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574181	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-731	-713	NNNNNNNNAGGTATGCTTG	4.0	3.0e-04	-8.105	3.520	1	1
HanXRQr2_Chr13g0574181|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574181	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-731	-713	CAAGCATACCTNNNNNNNN	3.6	3.8e-04	-7.879	3.422	2	2
HanXRQr2_Chr13g0574181|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574181	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-487	-469	CTTGNNNNNNNNNNNNNNN	2.6	6.6e-04	-7.317	3.178	3	3
HanXRQr2_Chr13g0574181|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574181	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-487	-469	NNNNNNNNNNNNNNNCAAG	2.3	7.8e-04	-7.154	3.107	4	4
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	limit	START_END	D	-1501	199	.	0	0	0	0
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-208	-190	TTGGCATGTTTCATGCAAA	11.2	1.7e-06	-13.308	5.780	1	1
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-208	-190	TTTGCATGAAACATGCCAA	11.0	2.0e-06	-13.133	5.703	2	2
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-834	-816	GATACAANNNNNNNGCATT	4.1	2.8e-04	-8.170	3.548	3	3
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-834	-816	AATGCNNNNNNNTTGTATC	3.6	3.8e-04	-7.879	3.422	4	4
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-153	-135	AAGCCATGTAACATGACAT	3.1	5.0e-04	-7.595	3.298	5	5
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-153	-135	ATGTCATGTTACATGGCTT	3.1	5.0e-04	-7.595	3.298	6	6
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-1463	-1445	NNNNNNNGAACNNNNNNNT	2.7	6.3e-04	-7.372	3.202	7	7
gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-1463	-1445	ANNNNNNNGTTCNNNNNNN	2.6	6.6e-04	-7.317	3.178	8	8
gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542	limit	START_END	D	-1501	199	.	0	0	0	0
gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-243	-225	GTAACATATATCTTGCTAT	5.1	1.5e-04	-8.774	3.810	1	1
gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-243	-225	ATAGCAAGATATATGTTAC	4.7	2.0e-04	-8.522	3.701	2	2
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	limit	START_END	D	-1501	199	.	0	0	0	0
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-131	-113	AAGGCATGAGACAGGCCGA	10.8	2.4e-06	-12.945	5.622	1	1
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-131	-113	TCGGCCTGTCTCATGCCTT	10.8	2.4e-06	-12.945	5.622	2	2
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-436	-418	CTGGCCTCGATCTTGGCGG	3.1	5.0e-04	-7.595	3.298	3	3
107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-436	-418	CCGCCAAGATCGAGGCCAG	2.8	6.0e-04	-7.422	3.223	4	4
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	limit	START_END	D	-1501	199	.	0	0	0	0
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	29	47	TCGGCCTGCCCCATGCTGG	12.4	5.2e-07	-14.463	6.281	1	1
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	29	47	CCAGCATGGGGCAGGCCGA	12.3	5.8e-07	-14.365	6.239	2	2
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	54	72	TTGGCATGTCCTATGCCTT	9.9	5.1e-06	-12.188	5.293	3	3
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	54	72	AAGGCATAGGACATGCCAA	9.2	8.9e-06	-11.625	5.049	4	4
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-439	-421	GGTGTATGTAACATGTTGT	5.3	1.4e-04	-8.899	3.865	5	5
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-1228	-1210	ATTGAATGACTCTTGAAAC	4.0	3.0e-04	-8.105	3.520	6	6
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-1228	-1210	GTTTCAAGAGTCATTCAAT	3.5	4.0e-04	-7.816	3.394	7	7
107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-439	-421	ACAACATGTTACATACACC	2.5	7.1e-04	-7.257	3.152	8	8
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	limit	START_END	D	-1501	199	.	0	0	0	0
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-52	-34	AAGGCATGGGACATGCCGA	13.8	1.3e-07	-15.852	6.885	1	1
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-52	-34	TCGGCATGTCCCATGCCTT	13.8	1.3e-07	-15.852	6.885	2	2
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-77	-59	CCGGCATGGGACAGGCCGA	12.0	7.7e-07	-14.076	6.113	3	3
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-77	-59	TCGGCCTGTCCCATGCCGG	12.0	7.7e-07	-14.076	6.113	4	4
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-700	-682	AAAGCATGACTCTAGTATG	5.7	1.1e-04	-9.146	3.972	5	5
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-700	-682	CATACTAGAGTCATGCTTT	5.6	1.1e-04	-9.089	3.947	6	6
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-1218	-1200	ACGGAATGAAACAGGACGG	5.2	1.5e-04	-8.830	3.835	7	7
107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-1218	-1200	CCGTCCTGTTTCATTCCGT	4.7	2.0e-04	-8.522	3.701	8	8
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	limit	START_END	D	-1501	199	.	0	0	0	0
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-115	-97	TCGGCCCGTCCCATGCCTT	6.8	5.1e-05	-9.877	4.290	1	1
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-115	-97	AAGGCATGGGACGGGCCGA	6.7	5.5e-05	-9.809	4.260	2	2
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-90	-72	TTGGCGTGAATATTGCTCT	3.6	3.8e-04	-7.879	3.422	3	3
107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-90	-72	AGAGCAATATTCACGCCAA	3.4	4.3e-04	-7.759	3.370	4	4
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	limit	START_END	D	-1501	199	.	0	0	0	0
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-241	-223	GCGGCNNNNNNNNNNNNNN	4.2	2.7e-04	-8.223	3.571	1	1
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-241	-223	NNNNNNNNNNNNNNGCCGC	3.8	3.4e-04	-7.989	3.469	2	2
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-416	-398	GTAGCNNNNNNNNNNNNNN	3.3	4.5e-04	-7.708	3.347	3	3
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	2	20	TTGCGATGTTTCATGCCTT	3.3	4.5e-04	-7.708	3.347	4	4
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-416	-398	NNNNNNNNNNNNNNGCTAC	3.0	5.4e-04	-7.533	3.272	5	5
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	46	64	GCGGCGTGCTTCGAGCTGT	2.9	5.7e-04	-7.477	3.247	6	6
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-204	-186	NNNNNNTGGTANNNNNNNN	2.4	7.4e-04	-7.203	3.128	7	7
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	R	-1058	-1040	ATAGNNNNNNNNNNNNNNN	2.3	7.8e-04	-7.154	3.107	8	8
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-204	-186	NNNNNNNNTACCANNNNNN	2.3	7.8e-04	-7.154	3.107	9	9
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	2	20	AAGGCATGAAACATCGCAA	2.3	7.8e-04	-7.154	3.107	10	10
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	46	64	ACAGCTCGAAGCACGCCGC	2.3	7.8e-04	-7.154	3.107	11	11
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-1058	-1040	NNNNNNNNNNNNNNNCTAT	2.2	8.2e-04	-7.100	3.084	12	12
gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951	site	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	D	-440	-422	NNNNNNNNNNNNNTGTTTG	1.8	1.0e-03	-6.882	2.989	13	13
;
; Matrices
;	matrix	name                                      	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	19	4	1	-46.100	18.700	64.800	a:0.345 c:0.183 g:0.148 t:0.324 
; Number of sequences scanned	17
; Sum of sequence lengths	27671
; N residues           	7120
; Matches per matrix
;	matrix	name                                      	matches	scored
;	1	dyads_test_vs_ctrl_m1dyads_test_vs_ctrl_m1	137	54730
;		TOTAL          	137	54730
; Host name	rsat
; Job started	2026-07-23.103726
; Job done	2026-07-23.103733
; Seconds	7.17
;	user	7.17
;	system	0.03
;	cuser	0.09
;	csystem	0.01