RSAT - peak-motifs result

Analysis: ñl (23/07/2026 09:24)

peak-motifs  -v 1 -title ñl -i $RSAT/public_html/tmp/www-data/2026/07/23/peak-motifs.2026-07-23.091935_2026-07-23.091935_6VEOk1/peak-motifspeak_seq -markov auto -disco oligos,dyads -nmotifs 10 -minol 6 -maxol 8 -merge_lengths -2str -origin end -offset -200 -motif_db footprintDB tf $RSAT/public_html/motif_databases/footprintDB/footprintDB.motif.tf -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/07/23/peak-motifs.2026-07-23.091935_2026-07-23.091935_6VEOk1

motif discovery
oligos_6-8nt	oligos_6-8nt_m1 assembly: gcaccacca (sig=2.47; e-value=0.0034) RC: tggtggtgc oligos_6-8nt_m2 assembly: cccataacc (sig=2.18; e-value=0.0066) RC: ggttatggg oligos_6-8nt_m3 assembly: gcaccaccata (sig=2.47; e-value=0.0034) RC: tatggtggtgc oligos_6-8nt_m4 assembly: cccataccc (sig=1.63; e-value=0.023) RC: gggtatggg oligos_6-8nt_m5 assembly: cggtacac (sig=1.36; e-value=0.044) RC: gtgtaccg oligos_6-8nt_m6 assembly: gagaaaaa (sig=1.35; e-value=0.045) RC: tttttctc oligos_6-8nt_m7 assembly: cccatagcc (sig=1.20; e-value=0.063) RC: ggctatggg oligos_6-8nt_m8 assembly: gcagcggc (sig=1.17; e-value=0.068) RC: gccgctgc oligos_6-8nt_m9 assembly: tacataa (sig=1.12; e-value=0.076) RC: ttatgta oligos_6-8nt_m10 assembly: ccgccac (sig=1.10; e-value=0.079) RC: gtggcgg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
dyads	dyads_m1 assembly: ccacnnccagcacc (sig=5.46; e-value=3.5e-06) RC: ggtgctggnngtgg dyads_m2 assembly: accannnnnnccacc (sig=2.63; e-value=0.0023) RC: ggtggnnnnnntggt dyads_m3 assembly: gcannnnnnnnnncac (sig=1.49; e-value=0.032) RC: gtgnnnnnnnnnntgc dyads_m4 assembly: cagnnnnnnnnnnnnnnnnnnnncca (sig=1.25; e-value=0.056) RC: tggnnnnnnnnnnnnnnnnnnnnctg dyads_m5 assembly: cacnnnnnnnnnnnnnnnnacc (sig=0.74; e-value=0.18) RC: ggtnnnnnnnnnnnnnnnngtg dyads_m6 assembly: cgannnnnnnnnnnnnnnnnggc (sig=0.62; e-value=0.24) RC: gccnnnnnnnnnnnnnnnnntcg dyads_m7 assembly: cagnggca (sig=0.38; e-value=0.42) RC: tgccnctg dyads_m8 assembly: ccannnnnnnnnnnnnnacc (sig=0.28; e-value=0.52) RC: ggtnnnnnnnnnnnnnntgg dyads_m9 assembly: ccgnnnccc (sig=0.21; e-value=0.62) RC: gggnnncgg dyads_m10 assembly: ataaat (sig=0.19; e-value=0.65) RC: atttat	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]

Motif discovery
Motif 1   oligos_6-8nt_m1	k-mer sig=2.47; evalue=0.0034 sdsCASCaCCAym KRTGGTGSTGSHS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor sdsCASCaCCAym CG31782:M4842_1.02:CISBP CG31782/M4842_1.02/CISBP R 13 0.9286 0.741 0.688 NA NA 3XHMGBOX1.ampDAP:M0425:AthalianaCistrome 3XHMGBOX1.ampDAP/M0425/AthalianaCistrome D 13 0.8667 0.790 0.685 NA NA MYB55.DAP:M0564:AthalianaCistrome MYB55.DAP/M0564/AthalianaCistrome D 13 0.9286 0.723 0.672 NA NA Total matches= 60 (57 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 2 (33.33%) Max nb of predicted sites per peak: 16  (gene3683) Mean nb of predicted sites per peak: 9.50	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6-8nt_m2	k-mer sig=2.18; evalue=0.0066 bcmCCaTArCCab VTGGYTATGGKGV	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor bcmCCaTArCCab Zfp617:UN0680.1:JASPAR Zfp617/UN0680.1/JASPAR D 13 0.8667 0.700 0.607 NA NA F52B5.7:M0454_1.02:CISBP F52B5.7/M0454_1.02/CISBP R 8 0.6154 0.880 0.541 NA NA CDX2:CDX2_2:HT-SELEX2 CDX2/CDX2_2/HT-SELEX2 D 9 0.6923 0.733 0.507 NA NA Total matches= 30 (27 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 2 (33.33%) Max nb of predicted sites per peak: 17  (gene3683) Mean nb of predicted sites per peak: 9.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6-8nt_m3	k-mer sig=2.47; evalue=0.0034 CrsCaSCaCCATaws SWTATGGTGSTGSYG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor CrsCaSCaCCATaws ASHR1.DAP:M0716:AthalianaCistrome ASHR1.DAP/M0716/AthalianaCistrome D 14 0.8750 0.705 0.617 NA NA CG31782:M4842_1.02:CISBP CG31782/M4842_1.02/CISBP R 13 0.8125 0.726 0.590 NA NA GATA1.DAP:M0288:AthalianaCistrome GATA1.DAP/M0288/AthalianaCistrome R 12 0.6667 0.828 0.552 NA NA Total matches= 23 (20 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 2 (33.33%) Max nb of predicted sites per peak: 14  (gene3683) Mean nb of predicted sites per peak: 8.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6-8nt_m4	k-mer sig=1.63; evalue=0.023 bcmCCATAsCCas STGGSTATGGKGV	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor bcmCCATAsCCas F52B5.7:M0454_1.02:CISBP F52B5.7/M0454_1.02/CISBP R 8 0.6154 0.895 0.551 NA NA Krueppel-like:5ke9_A:3D-footprint Krueppel-like/5ke9_A/3D-footprint R 9 0.6923 0.701 0.486 NA NA F52B5.7:UN0702.1:JASPAR F52B5.7/UN0702.1/JASPAR R 7 0.5385 0.893 0.481 NA NA Total matches= 15 (12 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 2 (33.33%) Max nb of predicted sites per peak: 18  (gene3683) Mean nb of predicted sites per peak: 9.50	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6-8nt_m5	k-mer sig=1.36; evalue=0.044 dmCGGTaCaCby RVGTGTACCGKH	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor dmCGGTaCaCby AT3G51470.DAP:M0361:AthalianaCistrome AT3G51470.DAP/M0361/AthalianaCistrome D 12 0.8000 0.803 0.643 NA NA fgenesh1_pg.C_scaffold_54000064:M1387_1.02:CISBP fgenesh1_pg.C_scaffold_54000064/M1387_1.02/CISBP D 10 0.8333 0.701 0.584 NA NA RAP1:M1515_1.02:CISBP RAP1/M1515_1.02/CISBP R 8 0.6667 0.847 0.565 NA NA Total matches= 53 (50 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 2 (33.33%) Max nb of predicted sites per peak: 8  (gene25542) Mean nb of predicted sites per peak: 5.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_6-8nt_m6	k-mer sig=1.35; evalue=0.045 akGAGAAaAAsr YSTTTTTCTCMT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor akGAGAAaAAsr Zm00001d027846:MA1823.1:JASPAR Zm00001d027846/MA1823.1/JASPAR D 11 0.8462 0.787 0.666 NA NA STB3:MA0390.2:JASPAR STB3/MA0390.2/JASPAR R 11 0.9167 0.724 0.664 NA NA Mtf1:PB0148.1:JASPAR Mtf1/PB0148.1/JASPAR D 12 0.8571 0.762 0.653 NA NA Total matches= 166 (163 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 3 (50.00%) Max nb of predicted sites per peak: 5  (gene14703) Mean nb of predicted sites per peak: 3.33	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_6-8nt_m7	k-mer sig=1.20; evalue=0.063 bCmCCATAsCCrs SYGGSTATGGKGV	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor bCmCCATAsCCrs F52B5.7:M0454_1.02:CISBP F52B5.7/M0454_1.02/CISBP R 8 0.6154 0.896 0.552 NA NA col-24:UN0086.1:JASPAR col-24/UN0086.1/JASPAR R 8 0.6154 0.800 0.492 NA NA F52B5.7:UN0702.1:JASPAR F52B5.7/UN0702.1/JASPAR R 7 0.5385 0.896 0.482 NA NA Total matches= 16 (13 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 2 (33.33%) Max nb of predicted sites per peak: 17  (gene3683) Mean nb of predicted sites per peak: 9.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_6-8nt_m8	k-mer sig=1.17; evalue=0.068 bkGCaGCGGCws SWGCCGCTGCMV	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor bkGCaGCGGCws GRF4:MA1815.1:JASPAR GRF4/MA1815.1/JASPAR D 12 0.9231 0.844 0.779 NA NA GRF4:EEAD0016:EEADannot GRF4/EEAD0016/EEADannot R 12 1.0000 0.762 0.762 NA NA MYOG:MA0500.2:JASPAR MYOG/MA0500.2/JASPAR D 12 1.0000 0.715 0.715 NA NA Total matches= 126 (123 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 2 (33.33%) Max nb of predicted sites per peak: 8  (gene3683) Mean nb of predicted sites per peak: 5.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_6-8nt_m9	k-mer sig=1.12; evalue=0.076 yrTACATArkw WMYTATGTAYR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor yrTACATArkw AT3G49930:UN0355.1:JASPAR AT3G49930/UN0355.1/JASPAR D 11 1.0000 0.738 0.738 NA NA CG11924:Cf2-PB_SOLEXA_FBgn0000286:FlyZincFinger CG11924/Cf2-PB_SOLEXA_FBgn0000286/FlyZincFinger R 11 1.0000 0.738 0.738 NA NA nhr-34:UN0745.1:JASPAR nhr-34/UN0745.1/JASPAR D 11 1.0000 0.737 0.737 NA NA Total matches= 181 (178 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 5 (83.33%) Max nb of predicted sites per peak: 9  (gene25542) Mean nb of predicted sites per peak: 3.40	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_6-8nt_m10	k-mer sig=1.10; evalue=0.079 ssCCGCCACca TGGTGGCGGSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ssCCGCCACca CRF4:MA0976.2:JASPAR CRF4/MA0976.2/JASPAR D 11 0.9167 0.866 0.794 NA NA ERF11:MA1001.3:JASPAR ERF11/MA1001.3/JASPAR D 11 0.9167 0.865 0.793 NA NA RPN4:M0501_1.02:CISBP RPN4/M0501_1.02/CISBP R 10 0.9091 0.858 0.780 NA NA Total matches= 327 (324 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 2 (33.33%) Max nb of predicted sites per peak: 7  (gene3683) Mean nb of predicted sites per peak: 5.50	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 11   dyads_m1	k-mer sig=5.46; evalue=3.5e-06 crCCAymwSCaSCaCCas STGGTGSTGSWKRTGGYG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor crCCAymwSCaSCaCCas 3XHMGBOX1.ampDAP:M0425:AthalianaCistrome 3XHMGBOX1.ampDAP/M0425/AthalianaCistrome D 15 0.8333 0.814 0.679 NA NA GATA1.DAP:M0288:AthalianaCistrome GATA1.DAP/M0288/AthalianaCistrome R 15 0.8333 0.756 0.630 NA NA ERF48.DAP:M0128:AthalianaCistrome ERF48.DAP/M0128/AthalianaCistrome R 17 0.7727 0.724 0.559 NA NA Total matches= 12 (9 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 2 (33.33%) Max nb of predicted sites per peak: 29  (gene3683) Mean nb of predicted sites per peak: 15.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 12   dyads_m2	k-mer sig=2.63; evalue=0.0023 sCaCCascascmCCaCCms SKGGTGGKGSTGSTGGTGS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor sCaCCascascmCCaCCms ERF48.DAP:M0128:AthalianaCistrome ERF48.DAP/M0128/AthalianaCistrome R 19 0.9048 0.758 0.686 NA NA RUNX2:RUNX2_methyl_1:HT-SELEX2 RUNX2/RUNX2_methyl_1/HT-SELEX2 D 19 0.9500 0.717 0.681 NA NA 3XHMGBOX1.ampDAP:M0425:AthalianaCistrome 3XHMGBOX1.ampDAP/M0425/AthalianaCistrome D 15 0.7895 0.821 0.648 NA NA Total matches= 26 (23 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 3 (50.00%) Max nb of predicted sites per peak: 29  (gene3683) Mean nb of predicted sites per peak: 10.33	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 13   dyads_m3	k-mer sig=1.49; evalue=0.032 skGCasyarsgCcgcCACcc GGGTGGCGGCSYTRSTGCMS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor skGCasyarsgCcgcCACcc CG3758:esg-F3-5_SOLEXA_FBgn0001981:FlyZincFinger CG3758/esg-F3-5_SOLEXA_FBgn0001981/FlyZincFinger R 13 0.5909 0.743 0.439 NA NA Cebpg:MA1848.1:JASPAR Cebpg/MA1848.1/JASPAR R 14 0.5385 0.762 0.410 NA NA AT4G26030.DAP:M0306:AthalianaCistrome AT4G26030.DAP/M0306/AthalianaCistrome D 14 0.5600 0.729 0.408 NA NA Total matches= 6 (3 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 5 (83.33%) Max nb of predicted sites per peak: 7  (gene3683) Mean nb of predicted sites per peak: 3.20	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 14   dyads_m4	k-mer sig=1.25; evalue=0.056 asCaGcvsCwssrbcasswgsrbrmCCAym KRTGGKYVYSCWSSTGVYSSWGSBGCTGST	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor asCaGcvsCwssrbcasswgsrbrmCCAym Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 4 (66.67%) Max nb of predicted sites per peak: 18  (gene3683) Mean nb of predicted sites per peak: 5.75	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 15   dyads_m5	k-mer sig=0.74; evalue=0.18 wsCACcmccacswccayywcyACCrs SYGGTRGWRRTGGWSGTGGKGGTGSW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wsCACcmccacswccayywcyACCrs DREB26:MA1248.1:JASPAR DREB26/MA1248.1/JASPAR D 19 0.7037 0.739 0.520 NA NA ATY19.DAP:M0562:AthalianaCistrome ATY19.DAP/M0562/AthalianaCistrome D 18 0.6207 0.741 0.460 NA NA MYB51:MA1773.1:JASPAR MYB51/MA1773.1/JASPAR D 18 0.6207 0.730 0.453 NA NA Total matches= 5 (2 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 4 (66.67%) Max nb of predicted sites per peak: 20  (gene3683) Mean nb of predicted sites per peak: 6.25	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 16   dyads_m6	k-mer sig=0.62; evalue=0.24 kGCGacsktkkkcayyskkgyyGGCsy RSGCCRRCMMSRRTGMMMAMSGTCGCM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor kGCGacsktkkkcayyskkgyyGGCsy Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 5 (83.33%) Max nb of predicted sites per peak: 5  (gene14703) Mean nb of predicted sites per peak: 2.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 17   dyads_m7	k-mer sig=0.38; evalue=0.42 dkCaGmGGCagc GCTGCCKCTGMH	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor dkCaGmGGCagc Adf1:Adf1:DrosophilaTF Adf1/Adf1/DrosophilaTF R 12 1.0000 0.750 0.750 NA NA GRF4:MA1815.1:JASPAR GRF4/MA1815.1/JASPAR D 12 0.9231 0.772 0.712 NA NA odd:odd_NAR_FBgn0002985:FlyZincFinger odd/odd_NAR_FBgn0002985/FlyZincFinger D 11 0.9167 0.735 0.674 NA NA Total matches= 62 (59 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 3 (50.00%) Max nb of predicted sites per peak: 9  (gene3683) Mean nb of predicted sites per peak: 4.67	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 18   dyads_m8	k-mer sig=0.28; evalue=0.52 caCCAyamscwbsdyswscACCws SWGGTGSWSRHSVWGSKTRTGGTG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor caCCAyamscwbsdyswscACCws ATY19.DAP:M0562:AthalianaCistrome ATY19.DAP/M0562/AthalianaCistrome D 18 0.6667 0.731 0.488 NA NA MYB51:MA1773.1:JASPAR MYB51/MA1773.1/JASPAR D 18 0.6667 0.717 0.478 NA NA MYB51.DAP:M0560:AthalianaCistrome MYB51.DAP/M0560/AthalianaCistrome D 18 0.6667 0.717 0.478 NA NA Total matches= 4 (1 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 2 (33.33%) Max nb of predicted sites per peak: 18  (gene3683) Mean nb of predicted sites per peak: 10.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 19   dyads_m9	k-mer sig=0.21; evalue=0.62 srCCGsyrCCCks SMGGGYRSCGGYS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor srCCGsyrCCCks KLF3:KLF3_methyl_1:HT-SELEX2 KLF3/KLF3_methyl_1/HT-SELEX2 D 12 0.9231 0.763 0.705 NA NA DNMT1:M0609_1.02:CISBP DNMT1/M0609_1.02/CISBP D 10 0.7692 0.790 0.608 NA NA NCU02525:M1728_1.02:CISBP NCU02525/M1728_1.02/CISBP D 10 0.7692 0.764 0.588 NA NA Total matches= 171 (168 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 4 (66.67%) Max nb of predicted sites per peak: 4  (gene25542) Mean nb of predicted sites per peak: 2.75	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 20   dyads_m10	k-mer sig=0.19; evalue=0.65 gyATAAATaa TTATTTATRC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor gyATAAATaa DMRT2:M0633_1.02:CISBP DMRT2/M0633_1.02/CISBP R 10 1.0000 0.830 0.830 NA NA amel4_ncbi_hmm42917:M1227_1.02:CISBP amel4_ncbi_hmm42917/M1227_1.02/CISBP R 10 1.0000 0.799 0.799 NA NA PBX2:MA1113.3:JASPAR PBX2/MA1113.3/JASPAR D 9 0.9000 0.882 0.794 NA NA Total matches= 482 (479 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 3 (50.00%) Max nb of predicted sites per peak: 19  (gene7299) Mean nb of predicted sites per peak: 7.33	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title ñl -i $RSAT/public_html/tmp/www-data/2026/07/23/peak-motifs.2026-07-23.091935_2026-07-23.091935_6VEOk1/peak-motifspeak_seq -markov auto -disco oligos,dyads -nmotifs 10 -minol 6 -maxol 8 -merge_lengths -2str -origin end -offset -200 -motif_db footprintDB tf $RSAT/public_html/motif_databases/footprintDB/footprintDB.motif.tf -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/07/23/peak-motifs.2026-07-23.091935_2026-07-23.091935_6VEOk1

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