; matrix-scan -v 1 -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/07/27/matrix-scan_2026-07-27.100705_92AixF.matrix -pseudo 1 -decimals 1 -2str -origin end -offset -200 -bginput -markov 1 -bg_pseudo 0.01 -return limits -return sites -return pval -return rank -lth score 3 -i $RSAT/public_html/tmp/www-data/2026/07/27/tmp_sequence_2026-07-27.100705_NJAD0t.fasta -seq_format fasta -n score ; Slow counting mode ; Input files ; input $RSAT/public_html/tmp/www-data/2026/07/27/tmp_sequence_2026-07-27.100705_NJAD0t.fasta ; Matrix files ; matrix 1 $RSAT/public_html/tmp/www-data/2026/07/27/matrix-scan_2026-07-27.100705_92AixF.matrix ; Sequence format fasta ; Pseudo counts 1 ; Background model ; Method input ; Markov order 1 ; Strand undef ; Background pseudo-frequency 0.01 ; Residue probabilities ; a 0.32381 ; c 0.18008 ; g 0.16635 ; t 0.32977 ; Thresholds lower upper ; score 3 NA ; Output columns ; 1 seq_id ; 2 ft_type ; 3 ft_name ; 4 strand ; 5 start ; 6 end ; 7 sequence ; 8 weight #seq_id ft_type ft_name strand start end sequence weight Pval ln_Pval sig rank rank_pm AT4G31940|Arabidopsis_thaliana.TAIR10.60|CYP82C4 limit START_END D -1069 199 . 0 0 0 0 AT4G31940|Arabidopsis_thaliana.TAIR10.60|CYP82C4 site oligos_6-8nt_m2oligos_6-8nt_m2 R -719 -708 ATTCATGCGGTA 6.5 2.1e-04 -8.463 3.675 1 1 AT4G31940|Arabidopsis_thaliana.TAIR10.60|CYP82C4 site oligos_6-8nt_m2oligos_6-8nt_m2 R -806 -795 ATGCATGNNNNN 5.3 5.1e-04 -7.576 3.290 2 2 AT4G31940|Arabidopsis_thaliana.TAIR10.60|CYP82C4 site oligos_6-8nt_m2oligos_6-8nt_m2 D -635 -624 GTACATGCAAGT 5.0 6.7e-04 -7.315 3.177 3 3 AT4G31940|Arabidopsis_thaliana.TAIR10.60|CYP82C4 site oligos_6-8nt_m2oligos_6-8nt_m2 R -966 -955 ATTCATGCATGG 4.8 7.9e-04 -7.145 3.103 4 4 AT4G31940|Arabidopsis_thaliana.TAIR10.60|CYP82C4 site oligos_6-8nt_m2oligos_6-8nt_m2 R -580 -569 GGACCTGCCTTG 4.8 7.9e-04 -7.145 3.103 5 5 AT4G31940|Arabidopsis_thaliana.TAIR10.60|CYP82C4 site oligos_6-8nt_m2oligos_6-8nt_m2 D -78 -67 TCTCATGCGTTC 4.8 7.9e-04 -7.145 3.103 6 6 AT4G31940|Arabidopsis_thaliana.TAIR10.60|CYP82C4 site oligos_6-8nt_m2oligos_6-8nt_m2 R -146 -135 ATGCATGCACGA 4.4 1.1e-03 -6.842 2.971 7 7 AT4G31940|Arabidopsis_thaliana.TAIR10.60|CYP82C4 site oligos_6-8nt_m2oligos_6-8nt_m2 D -697 -686 AAGCACGCAGGA 4.3 1.2e-03 -6.764 2.937 8 8 AT4G31940|Arabidopsis_thaliana.TAIR10.60|CYP82C4 site oligos_6-8nt_m2oligos_6-8nt_m2 R -359 -348 ATCCATGCATAA 4.0 1.4e-03 -6.540 2.840 9 9 AT4G31940|Arabidopsis_thaliana.TAIR10.60|CYP82C4 site oligos_6-8nt_m2oligos_6-8nt_m2 D -144 -133 GTGCATGCATTA 4.0 1.4e-03 -6.540 2.840 10 10 AT4G31940|Arabidopsis_thaliana.TAIR10.60|CYP82C4 site oligos_6-8nt_m2oligos_6-8nt_m2 D -804 -793 NNNCATGCATAC 3.8 1.7e-03 -6.404 2.781 11 11 AT4G31940|Arabidopsis_thaliana.TAIR10.60|CYP82C4 site oligos_6-8nt_m2oligos_6-8nt_m2 D -968 -957 GACCATGCATGA 3.6 1.9e-03 -6.278 2.726 12 12 AT4G31940|Arabidopsis_thaliana.TAIR10.60|CYP82C4 site oligos_6-8nt_m2oligos_6-8nt_m2 R -403 -392 TTACACGCAATG 3.6 1.9e-03 -6.278 2.726 13 13 AT4G31940|Arabidopsis_thaliana.TAIR10.60|CYP82C4 site oligos_6-8nt_m2oligos_6-8nt_m2 D -465 -454 GGTCACGCTATG 3.4 2.1e-03 -6.145 2.669 14 14 AT4G31940|Arabidopsis_thaliana.TAIR10.60|CYP82C4 site oligos_6-8nt_m2oligos_6-8nt_m2 R -430 -419 GTTAATGCCTTA 3.4 2.1e-03 -6.145 2.669 15 15 AT4G31940|Arabidopsis_thaliana.TAIR10.60|CYP82C4 site oligos_6-8nt_m2oligos_6-8nt_m2 R -673 -662 AACTAAGCCGGA 3.0 2.7e-03 -5.908 2.566 16 16 GSBRNA2T00011262001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g67210D limit START_END D -1501 199 . 0 0 0 0 GSBRNA2T00011262001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g67210D site oligos_6-8nt_m2oligos_6-8nt_m2 D -136 -125 ATTCATGCATGG 4.8 7.9e-04 -7.145 3.103 1 1 GSBRNA2T00011262001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g67210D site oligos_6-8nt_m2oligos_6-8nt_m2 R -1330 -1319 TATCATGTCANN 4.2 1.2e-03 -6.686 2.904 2 2 GSBRNA2T00011262001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g67210D site oligos_6-8nt_m2oligos_6-8nt_m2 R -1474 -1463 TGCCATGCGTGC 4.0 1.4e-03 -6.540 2.840 3 3 GSBRNA2T00011262001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g67210D site oligos_6-8nt_m2oligos_6-8nt_m2 R -134 -123 ATCCATGCATGA 3.9 1.5e-03 -6.471 2.810 4 4 GSBRNA2T00011262001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g67210D site oligos_6-8nt_m2oligos_6-8nt_m2 D -1476 -1465 AAGCACGCATGG 3.8 1.7e-03 -6.404 2.781 5 5 GSBRNA2T00011262001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g67210D site oligos_6-8nt_m2oligos_6-8nt_m2 D -244 -233 ACACATGCACTT 3.7 1.8e-03 -6.344 2.755 6 6 GSBRNA2T00011262001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g67210D site oligos_6-8nt_m2oligos_6-8nt_m2 R -183 -172 TTACACGCAAGG 3.7 1.8e-03 -6.344 2.755 7 7 GSBRNA2T00011262001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g67210D site oligos_6-8nt_m2oligos_6-8nt_m2 R -1469 -1458 TTCGATGCCATG 3.2 2.4e-03 -6.031 2.619 8 8 GSBRNA2T00011262001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g67210D site oligos_6-8nt_m2oligos_6-8nt_m2 R -1335 -1324 TGTCANNNNNNN 3.2 2.4e-03 -6.031 2.619 9 9 GSBRNA2T00011262001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g67210D site oligos_6-8nt_m2oligos_6-8nt_m2 D -1176 -1165 TGTCANNNNNNN 3.2 2.4e-03 -6.031 2.619 10 10 GSBRNA2T00011262001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g67210D site oligos_6-8nt_m2oligos_6-8nt_m2 D 99 110 AACCAAGCGGTG 3.2 2.4e-03 -6.031 2.619 11 11 GSBRNA2T00021899001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA08g12300D limit START_END D -1501 199 . 0 0 0 0 GSBRNA2T00021899001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA08g12300D site oligos_6-8nt_m2oligos_6-8nt_m2 D -136 -125 ATTCATGCATGG 4.8 7.9e-04 -7.145 3.103 1 1 GSBRNA2T00021899001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA08g12300D site oligos_6-8nt_m2oligos_6-8nt_m2 R -1498 -1487 AAACATTCCATC 4.0 1.4e-03 -6.540 2.840 2 2 GSBRNA2T00021899001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA08g12300D site oligos_6-8nt_m2oligos_6-8nt_m2 R -449 -438 TGCCATGCGTGC 4.0 1.4e-03 -6.540 2.840 3 3 GSBRNA2T00021899001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA08g12300D site oligos_6-8nt_m2oligos_6-8nt_m2 D -1287 -1276 TAACATACCTTC 3.9 1.5e-03 -6.471 2.810 4 4 GSBRNA2T00021899001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA08g12300D site oligos_6-8nt_m2oligos_6-8nt_m2 R -134 -123 ATCCATGCATGA 3.9 1.5e-03 -6.471 2.810 5 5 GSBRNA2T00021899001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA08g12300D site oligos_6-8nt_m2oligos_6-8nt_m2 D -451 -440 AAGCACGCATGG 3.8 1.7e-03 -6.404 2.781 6 6 GSBRNA2T00021899001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA08g12300D site oligos_6-8nt_m2oligos_6-8nt_m2 D -244 -233 ACACATGCACTT 3.7 1.8e-03 -6.344 2.755 7 7 GSBRNA2T00021899001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA08g12300D site oligos_6-8nt_m2oligos_6-8nt_m2 R -183 -172 TTACACGCAAGG 3.7 1.8e-03 -6.344 2.755 8 8 GSBRNA2T00021899001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA08g12300D site oligos_6-8nt_m2oligos_6-8nt_m2 D -1004 -993 NNNNNNNCCTGT 3.5 2.0e-03 -6.210 2.697 9 9 GSBRNA2T00021899001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA08g12300D site oligos_6-8nt_m2oligos_6-8nt_m2 D 99 110 AACCAAGCGGTT 3.5 2.0e-03 -6.210 2.697 10 10 GSBRNA2T00021899001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA08g12300D site oligos_6-8nt_m2oligos_6-8nt_m2 R -444 -433 TTCGATGCCATG 3.2 2.4e-03 -6.031 2.619 11 11 A08p025520.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A08p025520.1_BraROA limit START_END D -1501 199 . 0 0 0 0 A08p025520.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A08p025520.1_BraROA site oligos_6-8nt_m2oligos_6-8nt_m2 R -1378 -1367 AAACATTCCATA 4.8 7.9e-04 -7.145 3.103 1 1 A08p025520.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A08p025520.1_BraROA site oligos_6-8nt_m2oligos_6-8nt_m2 D -77 -66 ATTCATGCATGG 4.8 7.9e-04 -7.145 3.103 2 2 A08p025520.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A08p025520.1_BraROA site oligos_6-8nt_m2oligos_6-8nt_m2 R -359 -348 TGCCATGCGTGC 4.0 1.4e-03 -6.540 2.840 3 3 A08p025520.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A08p025520.1_BraROA site oligos_6-8nt_m2oligos_6-8nt_m2 D -1167 -1156 TAACATACCTTC 3.9 1.5e-03 -6.471 2.810 4 4 A08p025520.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A08p025520.1_BraROA site oligos_6-8nt_m2oligos_6-8nt_m2 R -75 -64 ATCCATGCATGA 3.9 1.5e-03 -6.471 2.810 5 5 A08p025520.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A08p025520.1_BraROA site oligos_6-8nt_m2oligos_6-8nt_m2 D -361 -350 AAGCACGCATGG 3.8 1.7e-03 -6.404 2.781 6 6 A08p025520.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A08p025520.1_BraROA site oligos_6-8nt_m2oligos_6-8nt_m2 D -185 -174 ACACATGCACTT 3.7 1.8e-03 -6.344 2.755 7 7 A08p025520.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A08p025520.1_BraROA site oligos_6-8nt_m2oligos_6-8nt_m2 R -124 -113 TTACACGCAAGG 3.7 1.8e-03 -6.344 2.755 8 8 A08p025520.1_BraROA|Brassica_rapa_ro18.SCU_BraROA_2.3.60|A08p025520.1_BraROA site oligos_6-8nt_m2oligos_6-8nt_m2 R -354 -343 TTCGATGCCATG 3.2 2.4e-03 -6.031 2.619 9 9 GLYMA_04G035600|Glycine_max.Glycine_max_v2.1.60|GLYMA_04G035600 limit START_END D -1501 199 . 0 0 0 0 GLYMA_04G035600|Glycine_max.Glycine_max_v2.1.60|GLYMA_04G035600 site oligos_6-8nt_m2oligos_6-8nt_m2 R -86 -75 AAGCATGCCGTG 9.4 7.1e-06 -11.857 5.150 1 1 GLYMA_04G035600|Glycine_max.Glycine_max_v2.1.60|GLYMA_04G035600 site oligos_6-8nt_m2oligos_6-8nt_m2 R -207 -196 ATTCATGCCACT 8.9 2.5e-05 -10.610 4.608 2 2 GLYMA_04G035600|Glycine_max.Glycine_max_v2.1.60|GLYMA_04G035600 site oligos_6-8nt_m2oligos_6-8nt_m2 D -604 -593 TTTCATGCGGAA 5.6 4.0e-04 -7.823 3.397 3 3 GLYMA_04G035600|Glycine_max.Glycine_max_v2.1.60|GLYMA_04G035600 site oligos_6-8nt_m2oligos_6-8nt_m2 D -550 -539 TGGTATGCCATT 5.3 5.1e-04 -7.576 3.290 4 4 GLYMA_04G035600|Glycine_max.Glycine_max_v2.1.60|GLYMA_04G035600 site oligos_6-8nt_m2oligos_6-8nt_m2 D -389 -378 AAGCATGCATAT 5.2 5.6e-04 -7.480 3.248 5 5 GLYMA_04G035600|Glycine_max.Glycine_max_v2.1.60|GLYMA_04G035600 site oligos_6-8nt_m2oligos_6-8nt_m2 R -552 -541 TGGCATACCAAA 4.6 9.2e-04 -6.994 3.038 6 6 GLYMA_04G035600|Glycine_max.Glycine_max_v2.1.60|GLYMA_04G035600 site oligos_6-8nt_m2oligos_6-8nt_m2 R -924 -913 TGTCACTCCTAG 4.1 1.3e-03 -6.619 2.875 7 7 GLYMA_04G035600|Glycine_max.Glycine_max_v2.1.60|GLYMA_04G035600 site oligos_6-8nt_m2oligos_6-8nt_m2 R -942 -931 AATCACGGCAAT 3.6 1.9e-03 -6.278 2.726 8 8 GLYMA_04G035600|Glycine_max.Glycine_max_v2.1.60|GLYMA_04G035600 site oligos_6-8nt_m2oligos_6-8nt_m2 D -584 -573 TTTCATCCCTGT 3.6 1.9e-03 -6.278 2.726 9 9 GLYMA_04G035600|Glycine_max.Glycine_max_v2.1.60|GLYMA_04G035600 site oligos_6-8nt_m2oligos_6-8nt_m2 R -391 -380 ATGCATGCTTAT 3.6 1.9e-03 -6.278 2.726 10 10 GLYMA_04G035600|Glycine_max.Glycine_max_v2.1.60|GLYMA_04G035600 site oligos_6-8nt_m2oligos_6-8nt_m2 D -815 -804 GGTCATGACATC 3.3 2.3e-03 -6.090 2.645 11 11 GLYMA_04G035600|Glycine_max.Glycine_max_v2.1.60|GLYMA_04G035600 site oligos_6-8nt_m2oligos_6-8nt_m2 R -919 -908 ATCCATGTCACT 3.0 2.7e-03 -5.908 2.566 12 12 GLYMA_04G035600|Glycine_max.Glycine_max_v2.1.60|GLYMA_04G035600 site oligos_6-8nt_m2oligos_6-8nt_m2 D -77 -66 CTTCATGCTAGT 3.0 2.7e-03 -5.908 2.566 13 13 gene-Lalb_Chr23g0266791|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr23g0266791 limit START_END D -1501 199 . 0 0 0 0 gene-Lalb_Chr23g0266791|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr23g0266791 site oligos_6-8nt_m2oligos_6-8nt_m2 R -62 -51 AAGCATGCCTAA 8.6 4.2e-05 -10.071 4.374 1 1 gene-Lalb_Chr23g0266791|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr23g0266791 site oligos_6-8nt_m2oligos_6-8nt_m2 R -1490 -1479 TTCCCTGCCCGT 5.1 6.1e-04 -7.403 3.215 2 2 gene-Lalb_Chr23g0266791|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr23g0266791 site oligos_6-8nt_m2oligos_6-8nt_m2 D -898 -887 TTTCAGGCCTAT 4.4 1.1e-03 -6.842 2.971 3 3 gene-Lalb_Chr23g0266791|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr23g0266791 site oligos_6-8nt_m2oligos_6-8nt_m2 D -1480 -1469 AATCATGGCAAT 4.3 1.2e-03 -6.764 2.937 4 4 gene-Lalb_Chr23g0266791|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr23g0266791 site oligos_6-8nt_m2oligos_6-8nt_m2 D -791 -780 TATCATGGCATT 4.3 1.2e-03 -6.764 2.937 5 5 gene-Lalb_Chr23g0266791|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr23g0266791 site oligos_6-8nt_m2oligos_6-8nt_m2 R -481 -470 GTTCAGGCCACT 4.0 1.4e-03 -6.540 2.840 6 6 gene-Lalb_Chr23g0266791|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr23g0266791 site oligos_6-8nt_m2oligos_6-8nt_m2 R -1369 -1358 AGTCATGCTTTG 3.9 1.5e-03 -6.471 2.810 7 7 gene-Lalb_Chr23g0266791|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr23g0266791 site oligos_6-8nt_m2oligos_6-8nt_m2 R -788 -777 AAGAATGCCATG 3.8 1.7e-03 -6.404 2.781 8 8 gene-Lalb_Chr23g0266791|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr23g0266791 site oligos_6-8nt_m2oligos_6-8nt_m2 D -869 -858 GACCATGCATAA 3.7 1.8e-03 -6.344 2.755 9 9 gene-Lalb_Chr23g0266791|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr23g0266791 site oligos_6-8nt_m2oligos_6-8nt_m2 D -1367 -1356 AAGCATGACTTA 3.6 1.9e-03 -6.278 2.726 10 10 gene-Lalb_Chr23g0266791|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr23g0266791 site oligos_6-8nt_m2oligos_6-8nt_m2 R -753 -742 NNNNNNNCCTAT 3.6 1.9e-03 -6.278 2.726 11 11 gene-Lalb_Chr23g0266791|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr23g0266791 site oligos_6-8nt_m2oligos_6-8nt_m2 D -60 -49 AGGCATGCTTTA 3.4 2.1e-03 -6.145 2.669 12 12 gene-Lalb_Chr23g0266791|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr23g0266791 site oligos_6-8nt_m2oligos_6-8nt_m2 D -1353 -1342 ATACACACCTTA 3.3 2.3e-03 -6.090 2.645 13 13 107782393|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107782393 limit START_END D -1501 199 . 0 0 0 0 107782393|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107782393 site oligos_6-8nt_m2oligos_6-8nt_m2 D -217 -206 TACCATGCCGTT 9.2 1.3e-05 -11.252 4.887 1 1 107782393|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107782393 site oligos_6-8nt_m2oligos_6-8nt_m2 D -335 -324 ATTCATACCAAA 5.5 4.4e-04 -7.736 3.360 2 2 107782393|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107782393 site oligos_6-8nt_m2oligos_6-8nt_m2 R -295 -284 ATGCACACCATG 3.6 1.9e-03 -6.278 2.726 3 3 107782393|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107782393 site oligos_6-8nt_m2oligos_6-8nt_m2 D -59 -48 TACCACTCCTTG 3.0 2.7e-03 -5.908 2.566 4 4 107790829|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107790829 limit START_END D -1501 199 . 0 0 0 0 107790829|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107790829 site oligos_6-8nt_m2oligos_6-8nt_m2 D -335 -324 TACCATGCCGTT 9.2 1.3e-05 -11.252 4.887 1 1 107790829|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107790829 site oligos_6-8nt_m2oligos_6-8nt_m2 R -1281 -1270 AAACACGCCTAA 7.3 1.4e-04 -8.886 3.859 2 2 107790829|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107790829 site oligos_6-8nt_m2oligos_6-8nt_m2 D -346 -335 AAACATGCATGT 4.6 9.2e-04 -6.994 3.038 3 3 107790829|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107790829 site oligos_6-8nt_m2oligos_6-8nt_m2 D -717 -706 TTTCCCGCCCTT 4.4 1.1e-03 -6.842 2.971 4 4 107790829|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107790829 site oligos_6-8nt_m2oligos_6-8nt_m2 R -344 -333 GTACATGCATGT 4.3 1.2e-03 -6.764 2.937 5 5 107790829|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107790829 site oligos_6-8nt_m2oligos_6-8nt_m2 R -1392 -1381 ATGTATGCCACC 3.8 1.7e-03 -6.404 2.781 6 6 107790829|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107790829 site oligos_6-8nt_m2oligos_6-8nt_m2 R -416 -405 ATGCACACCAGG 3.7 1.8e-03 -6.344 2.755 7 7 107790829|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107790829 site oligos_6-8nt_m2oligos_6-8nt_m2 D -308 -297 CTTCATGCAATA 3.5 2.0e-03 -6.210 2.697 8 8 107790829|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107790829 site oligos_6-8nt_m2oligos_6-8nt_m2 R -1360 -1349 GCACATGCAACG 3.2 2.4e-03 -6.031 2.619 9 9 107790829|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107790829 site oligos_6-8nt_m2oligos_6-8nt_m2 D -162 -151 TACCACTCCTTG 3.0 2.7e-03 -5.908 2.566 10 10 Prudul26B028905|Prunus_dulcis.ALMONDv2.60|Prudul26B028905 limit START_END D -832 199 . 0 0 0 0 Prudul26B028905|Prunus_dulcis.ALMONDv2.60|Prudul26B028905 site oligos_6-8nt_m2oligos_6-8nt_m2 R -100 -89 AGACATGCCAAA 8.4 5.5e-05 -9.802 4.257 1 1 Prudul26B028905|Prunus_dulcis.ALMONDv2.60|Prudul26B028905 site oligos_6-8nt_m2oligos_6-8nt_m2 D -122 -111 TTGCATGCCCCT 6.7 1.9e-04 -8.575 3.724 2 2 Prudul26B028905|Prunus_dulcis.ALMONDv2.60|Prudul26B028905 site oligos_6-8nt_m2oligos_6-8nt_m2 R -124 -113 GGGCATGCAAGT 5.0 6.7e-04 -7.315 3.177 3 3 Prudul26B028905|Prunus_dulcis.ALMONDv2.60|Prudul26B028905 site oligos_6-8nt_m2oligos_6-8nt_m2 R -827 -816 ATTCATGCATAA 4.9 7.2e-04 -7.237 3.143 4 4 Prudul26B028905|Prunus_dulcis.ALMONDv2.60|Prudul26B028905 site oligos_6-8nt_m2oligos_6-8nt_m2 R -133 -122 AGTCTTGCCAAC 4.4 1.1e-03 -6.842 2.971 5 5 Prudul26B028905|Prunus_dulcis.ALMONDv2.60|Prudul26B028905 site oligos_6-8nt_m2oligos_6-8nt_m2 R -482 -471 GCTCACTCCAGA 3.5 2.0e-03 -6.210 2.697 6 6 Prudul26B028905|Prunus_dulcis.ALMONDv2.60|Prudul26B028905 site oligos_6-8nt_m2oligos_6-8nt_m2 D -280 -269 ATTCANNNNNNN 3.3 2.3e-03 -6.090 2.645 7 7 PRUPE_1G387700|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_1G387700 limit START_END D -798 199 . 0 0 0 0 PRUPE_1G387700|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_1G387700 site oligos_6-8nt_m2oligos_6-8nt_m2 R -100 -89 AGACATGCCAAA 8.4 5.5e-05 -9.802 4.257 1 1 PRUPE_1G387700|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_1G387700 site oligos_6-8nt_m2oligos_6-8nt_m2 D -122 -111 TTGCATGCCCCT 6.7 1.9e-04 -8.575 3.724 2 2 PRUPE_1G387700|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_1G387700 site oligos_6-8nt_m2oligos_6-8nt_m2 R -124 -113 GGGCATGCAAGT 5.0 6.7e-04 -7.315 3.177 3 3 PRUPE_1G387700|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_1G387700 site oligos_6-8nt_m2oligos_6-8nt_m2 R -133 -122 AGTCTTGCCAAC 4.4 1.1e-03 -6.842 2.971 4 4 PRUPE_1G387700|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_1G387700 site oligos_6-8nt_m2oligos_6-8nt_m2 R -702 -691 TTCCAAGCCCAG 4.3 1.2e-03 -6.764 2.937 5 5 PRUPE_1G387700|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_1G387700 site oligos_6-8nt_m2oligos_6-8nt_m2 R -477 -466 GCTCACTCCAGA 3.5 2.0e-03 -6.210 2.697 6 6 PRUPE_1G387700|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_1G387700 site oligos_6-8nt_m2oligos_6-8nt_m2 D -275 -264 ATTCANNNNNNN 3.3 2.3e-03 -6.090 2.645 7 7 gene:Solyc12g088970.1.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|gene:Solyc12g088970.1.ITAG4.0 limit START_END D -1264 199 . 0 0 0 0 gene:Solyc12g088970.1.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|gene:Solyc12g088970.1.ITAG4.0 site oligos_6-8nt_m2oligos_6-8nt_m2 D -142 -131 CACCATGCCATT 6.6 2.0e-04 -8.530 3.704 1 1 gene:Solyc12g088970.1.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|gene:Solyc12g088970.1.ITAG4.0 site oligos_6-8nt_m2oligos_6-8nt_m2 D -333 -322 ATTTATGCCGAA 5.8 3.4e-04 -7.978 3.465 2 2 gene:Solyc12g088970.1.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|gene:Solyc12g088970.1.ITAG4.0 site oligos_6-8nt_m2oligos_6-8nt_m2 D -836 -825 ACGTACGCCTTT 4.7 8.5e-04 -7.068 3.070 3 3 gene:Solyc12g088970.1.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|gene:Solyc12g088970.1.ITAG4.0 site oligos_6-8nt_m2oligos_6-8nt_m2 D -303 -292 AAGCATTCCCTA 4.3 1.2e-03 -6.764 2.937 4 4 gene:Solyc12g088970.1.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|gene:Solyc12g088970.1.ITAG4.0 site oligos_6-8nt_m2oligos_6-8nt_m2 R -663 -652 NNNNNNNCCTAT 3.6 1.9e-03 -6.278 2.726 5 5 ; ; Matrices ; matrix name ncol nrow pseudo Wmin Wmax Wrange ; 1 oligos_6-8nt_m2oligos_6-8nt_m2 12 4 1 -26.300 10.600 36.900 a:0.324 c:0.180 g:0.166 t:0.330 ; Number of sequences scanned 11 ; Sum of sequence lengths 16670 ; N residues 2263 ; Matches per matrix ; matrix name matches scored ; 1 oligos_6-8nt_m2oligos_6-8nt_m2 106 33098 ; TOTAL 106 33098 ; Host name rsat ; Job started 2026-07-27.100705 ; Job done 2026-07-27.100708 ; Seconds 2.93 ; user 2.93 ; system 0.04 ; cuser 0.11 ; csystem 0.02