; matrix-scan -v 1 -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/07/27/matrix-scan_2026-07-27.114649_P2htE7.matrix -pseudo 1 -decimals 1 -2str -origin end -offset -200 -bginput -markov 1 -bg_pseudo 0.01 -return limits -return sites -return pval -return rank -lth score 1 -uth pval 1e-3 -i $RSAT/public_html/tmp/www-data/2026/07/27/tmp_sequence_2026-07-27.114649_hMve5p.fasta -seq_format fasta -n score ; Slow counting mode ; Input files ; input $RSAT/public_html/tmp/www-data/2026/07/27/tmp_sequence_2026-07-27.114649_hMve5p.fasta ; Matrix files ; matrix 1 $RSAT/public_html/tmp/www-data/2026/07/27/matrix-scan_2026-07-27.114649_P2htE7.matrix ; Sequence format fasta ; Pseudo counts 1 ; Background model ; Method input ; Markov order 1 ; Strand undef ; Background pseudo-frequency 0.01 ; Residue probabilities ; a 0.32355 ; c 0.18525 ; g 0.15053 ; t 0.34067 ; Thresholds lower upper ; pval NA 0.001 ; score 1 NA ; Output columns ; 1 seq_id ; 2 ft_type ; 3 ft_name ; 4 strand ; 5 start ; 6 end ; 7 sequence ; 8 weight #seq_id ft_type ft_name strand start end sequence weight Pval ln_Pval sig rank rank_pm AT2G44050|Arabidopsis_thaliana.TAIR10.60|COS1 limit START_END D -51 199 . 0 0 0 0 GSBRNA2T00101444001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g24640D limit START_END D -136 199 . 0 0 0 0 GSBRNA2T00101444001|Brassica_napus.AST_PRJEB5043_v1.60|BnaC03g24640D site oligos_6-8nt_m2oligos_6-8nt_m2 D 79 90 CAACACGCCGTC 5.3 4.9e-04 -7.619 3.309 1 1 GSBRNA2T00139024001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g20600D limit START_END D -184 199 . 0 0 0 0 GSBRNA2T00139024001|Brassica_napus.AST_PRJEB5043_v1.60|BnaA03g20600D site oligos_6-8nt_m2oligos_6-8nt_m2 D 42 53 CAACACGCCGTC 5.3 4.9e-04 -7.619 3.309 1 1 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 limit START_END D -1501 199 . 0 0 0 0 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 R -969 -958 TACCATGNNNNN 5.5 4.2e-04 -7.779 3.378 1 1 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 D -1084 -1073 TCTCATGNNNNN 5.3 4.9e-04 -7.619 3.309 2 2 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 R -1317 -1306 TGACATGCACGG 4.8 7.5e-04 -7.197 3.126 3 3 GLYMA_08G087500|Glycine_max.Glycine_max_v2.1.60|GLYMA_08G087500 site oligos_6-8nt_m2oligos_6-8nt_m2 R 140 151 GGTCATGCACAA 4.8 7.5e-04 -7.197 3.126 4 4 gene-Lalb_Chr13g0292401|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0292401 limit START_END D -1501 199 . 0 0 0 0 gene-Lalb_Chr13g0292401|Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI|gene-Lalb_Chr13g0292401 site oligos_6-8nt_m2oligos_6-8nt_m2 R -2 9 TTGCAAGCCACT 6.0 2.7e-04 -8.218 3.569 1 1 Prudul26B014047|Prunus_dulcis.ALMONDv2.60|Prudul26B014047 limit START_END D -143 199 . 0 0 0 0 Prudul26B014047|Prunus_dulcis.ALMONDv2.60|Prudul26B014047 site oligos_6-8nt_m2oligos_6-8nt_m2 D 162 173 ACTCATGCCTCC 7.1 1.2e-04 -9.016 3.916 1 1 Prudul26B014047|Prunus_dulcis.ALMONDv2.60|Prudul26B014047 site oligos_6-8nt_m2oligos_6-8nt_m2 D -9 2 CGGCAAGCCTAT 4.8 7.5e-04 -7.197 3.126 2 2 PRUPE_7G270800|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_7G270800 limit START_END D -1 199 . 0 0 0 0 PRUPE_7G270800|Prunus_persica.Prunus_persica_NCBIv2.60|PRUPE_7G270800 site oligos_6-8nt_m2oligos_6-8nt_m2 R 2 13 TGACATTCCTAT 4.8 7.5e-04 -7.197 3.126 1 1 Solyc08g015660.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc08g015660.ITAG4.0 limit START_END D -1501 199 . 0 0 0 0 Solyc08g015660.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc08g015660.ITAG4.0 site oligos_6-8nt_m2oligos_6-8nt_m2 D -492 -481 CTGCATGCCATC 6.7 1.5e-04 -8.776 3.811 1 1 Solyc08g015660.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc08g015660.ITAG4.0 site oligos_6-8nt_m2oligos_6-8nt_m2 R -1390 -1379 AGTCATACCAAA 6.2 2.3e-04 -8.382 3.640 2 2 Solyc08g015660.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc08g015660.ITAG4.0 site oligos_6-8nt_m2oligos_6-8nt_m2 R -680 -669 TAGCATGCGCAT 5.9 2.9e-04 -8.148 3.539 3 3 Solyc08g015660.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc08g015660.ITAG4.0 site oligos_6-8nt_m2oligos_6-8nt_m2 R -1491 -1480 AAGTATGCCTAA 5.2 5.4e-04 -7.532 3.271 4 4 Solyc08g015660.ITAG4.0|Solanum_lycopersicum.ITAG4.0.JGI|Solyc08g015660.ITAG4.0 site oligos_6-8nt_m2oligos_6-8nt_m2 R -494 -483 TGGCATGCAGTC 5.0 6.4e-04 -7.358 3.196 5 5 ; ; Matrices ; matrix name ncol nrow pseudo Wmin Wmax Wrange ; 1 oligos_6-8nt_m2oligos_6-8nt_m2 12 4 1 -26.400 10.700 37.100 a:0.324 c:0.185 g:0.151 t:0.341 ; Number of sequences scanned 8 ; Sum of sequence lengths 6618 ; N residues 1277 ; Matches per matrix ; matrix name matches scored ; 1 oligos_6-8nt_m2oligos_6-8nt_m2 15 13060 ; TOTAL 15 13060 ; Host name rsat ; Job started 2026-07-27.114650 ; Job done 2026-07-27.114651 ; Seconds 1.6 ; user 1.6 ; system 0.02 ; cuser 0.11 ; csystem 0.02